View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19538_low_2 (Length: 754)

Name: NF19538_low_2
Description: NF19538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19538_low_2
NF19538_low_2
[»] chr1 (1 HSPs)
chr1 (16-740)||(13019335-13020044)


Alignment Details
Target: chr1 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 16 - 740
Target Start/End: Original strand, 13019335 - 13020044
Alignment:
Q  16 aacaattccatcaacactcaaaactttcttccaacaacgcagtaatgatctgtcatcagcaatctccagaaccatcacatcgttaaaacactcaatcgac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  13019335 aacaattccatcaacactcaaaactttcttccaacaacgcagtaatgatctgtcatcagcaatctccagaaccatcacatcgttaaaacactctatagac 13019434  T
Q  116 gataaaaatgagccgtcgtttagtgagtttaatgatgtgactgagttcaatctctccggtttaaaagtagtagtaactactcctgcttttcccaacgaca 215  Q
    ||||||||||||               ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  13019435 gataaaaatgag---------------tttaacgatgtgactgagttcaatctctccggtttaaaagtagtagtaactactcctgttttttccaacgaca 13019519  T
Q  216 gacttacgttgggaaaagtacaaattacaatgttttcaaaatcgaactgcagagactgttctgcagttcgaagatttttcaaagaaagaagattgaaatt 315  Q
    || |  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13019520 gagtgtcgttgggaaaagtacaaataacaatgttttcaaaatcgaactgcagagactgttctgcagttcgaagatttttcaaagaaagacgattgaaatt 13019619  T
Q  316 catcgaaatcaacattgatgtatatacagagagagaaaaagagctgaaggaaagaactggaaattcaaattcaactgttccaatgattttcttcaacgac 415  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13019620 catcgaaatcaacattgatgtgtatacagagagagaaaaagagctgaaggaaagaactggaaattcaaattcaactgttccaatgattttcttcaacgac 13019719  T
Q  416 aagctaatcggtggattagtggaattaaacacgatgaggaagaacgaaggcggtgaattggagaagaaactgatcgaaattgcgaatggaaaattttctg 515  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  13019720 aagctaatcggaggattagtggaattaaacgcgatgaggaagaacgaaggcggtgaattggagaagaaactgatcgaaattgcgaatggaaaatattccg 13019819  T
Q  516 gtgatattccgttggcaccggagtatggatttgatgagatggtggagatggagaaggaggatgagatagtgaaggtagtgagagtgttgagacagagatt 615  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13019820 gtgatattccggtggcaccggagtatggatttgatgagatggtggagatggagaaggaggatgagatagtgaaggtagtgagagtattgagacagagatt 13019919  T
Q  616 accgattcaagataggttgatgaagatgaagattgtgaggaattgttttgatggaaatgaattggttcagcttcttgtgagaaaccatggttatgttcat 715  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13019920 accgattcaagatcggttgatgaagatgaagattgtgaggaattgttttgatggaaatgaattggttcagcttcttgtgagaaaccatggttatgttcat 13020019  T
Q  716 cataaggtgtgttctgtttttgcat 740  Q
     ||||||||||||||||||||||||    
T  13020020 aataaggtgtgttctgtttttgcat 13020044  T

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