View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19538_low_7 (Length: 392)
Name: NF19538_low_7
Description: NF19538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19538_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 4 - 390
Target Start/End: Original strand, 4378361 - 4378749
Alignment:
| Q |
4 |
atatgttactacatttccaactaactaaagatgattagacatataataaattcaaagag----aatatatcatatcacatgggagtgacttcatcttgtc |
99 |
Q |
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| T |
4378361 |
atatgttactaaatttccaactaattaaagatgattagtcatataatcaattcaaagagtatatatatatcatatcacatgggagtgacatcatcttgat |
4378460 |
T |
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| Q |
100 |
atacgttgagaaatacttataagaaggcttttaactgtcaaaacagtggcaagtcagttttatttagagaaaattgattaattatatcattagaatcaaa |
199 |
Q |
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| T |
4378461 |
ataagttgagaaatacgtataagaaggcttttaactgtgaaaacagtgacaagtcaattttatttagtgaaaagtgattaattatatcagtagaatcaaa |
4378560 |
T |
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| Q |
200 |
tcacttttaagtgaatagtatttataagtctatatacatagtctaggtaaaggtagaaatatgaaaactccaatgatttatgtgatagtttaaagttaaa |
299 |
Q |
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| T |
4378561 |
tcacttttaagtgaatagtatttataagtctatatacatagtctaggtaaaggtagaaatatgaaaactccaatgatttatgtgatagtttaaagttaaa |
4378660 |
T |
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| Q |
300 |
accctaataatcatgcatggtaatccctccaataagaaacctacagaacagaaagcttttaacactgatgatcagagagaggaagaggtca |
390 |
Q |
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| T |
4378661 |
accctaataatcatgcatggtaatccctccaataagaaacctacagaacagaaagcttttaacactgatgatc--agagaggaagaggtca |
4378749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 259 - 376
Target Start/End: Original strand, 31714496 - 31714612
Alignment:
| Q |
259 |
tatgaaaactccaatgatttatgtgatagtttaaagttaaaaccctaataatcatgcatggtaatccctccaataagaaacctacagaacagaaagcttt |
358 |
Q |
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| T |
31714496 |
tatgaaaactccaatcatttatgtgatagtttaaagttcaaaccataataatcatgcatggtaatccctccaataagaaacctacacaatagaaagc-tt |
31714594 |
T |
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| Q |
359 |
taacactgatgatcagag |
376 |
Q |
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| T |
31714595 |
taacactgatcatcagag |
31714612 |
T |
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