View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19539_high_10 (Length: 479)

Name: NF19539_high_10
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19539_high_10
NF19539_high_10
[»] chr6 (5 HSPs)
chr6 (12-423)||(33823176-33823585)
chr6 (27-106)||(31789943-31790022)
chr6 (426-461)||(33823867-33823902)
chr6 (233-291)||(10400166-10400224)
chr6 (227-288)||(2548316-2548379)
[»] chr4 (9 HSPs)
chr4 (27-113)||(34786577-34786663)
chr4 (226-291)||(19422315-19422380)
chr4 (53-106)||(39635408-39635461)
chr4 (246-290)||(7730513-7730557)
chr4 (227-291)||(9843775-9843839)
chr4 (226-282)||(24160603-24160659)
chr4 (66-110)||(35752799-35752843)
chr4 (228-282)||(24091371-24091424)
chr4 (227-265)||(55994296-55994334)
[»] chr2 (3 HSPs)
chr2 (227-291)||(10150652-10150716)
chr2 (227-291)||(26484193-26484257)
chr2 (226-266)||(9478221-9478261)
[»] chr1 (3 HSPs)
chr1 (245-291)||(21516255-21516301)
chr1 (226-291)||(30815743-30815809)
chr1 (226-282)||(40357994-40358050)
[»] chr8 (4 HSPs)
chr8 (246-291)||(40279724-40279769)
chr8 (227-271)||(4558715-4558759)
chr8 (227-275)||(32181262-32181310)
chr8 (224-272)||(44617893-44617941)
[»] chr5 (4 HSPs)
chr5 (226-291)||(40499783-40499848)
chr5 (226-291)||(11095577-11095642)
chr5 (247-291)||(15985372-15985416)
chr5 (226-290)||(36638644-36638708)
[»] chr7 (5 HSPs)
chr7 (226-282)||(35536013-35536069)
chr7 (226-264)||(27481402-27481440)
chr7 (229-278)||(44348505-44348554)
chr7 (227-291)||(39539870-39539934)
chr7 (227-271)||(47528042-47528086)
[»] chr3 (4 HSPs)
chr3 (227-291)||(44237390-44237454)
chr3 (224-291)||(41159006-41159073)
chr3 (226-276)||(44488796-44488846)
chr3 (226-291)||(48528475-48528540)


Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 12 - 423
Target Start/End: Original strand, 33823176 - 33823585
Alignment:
Q  12 ctcttgaatactcggaccaaccggcaaaactcctctaccaaataagtttgagcgagtaggaagtctagcaagaattaattgccaagagaaaatttaaatt 111  Q
    ||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |    
T  33823176 ctcttgaatactcggaccaactggcaaaactcctctacgagataagtttgagcgagtaggaagtctagcaataattaattgccaagagaaaatttgaact 33823275  T
Q  112 ttggggagccaaactaaggttaggacagttatatctagttacaagtagttatacaatgtgctagagactacactatctctttgtgagctctaggttaaca 211  Q
    ||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||     
T  33823276 ttttggagtcaaactaaggttaggacagttatatctagttacaagtagttatacaatgtgctagagattacactatctctttgtgagctctagattaac- 33823374  T
Q  212 ctattcttttgatagttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaacctgattgaaattgattttac 311  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823375 -tattcttttgataattatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaacctgattgaaattgattttac 33823473  T
Q  312 caatgaggatacaatgaaaattctgactggtcattcctgaattgttgttaataatatatcccttcttactcaattccaaaccagagaaacaagagtattc 411  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  33823474 caatgaggataccatgaaaattctgactggtcattcctgaattgttgttaataatatttcccttcttactcaattccaaaccagagaagcaagagtattc 33823573  T
Q  412 attaagaaaaga 423  Q
    ||||||||||||    
T  33823574 attaagaaaaga 33823585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 31789943 - 31790022
Alignment:
Q  27 accaaccggcaaaactcctctaccaaataagtttgagcgagtaggaagtctagcaagaattaattgccaagagaaaattt 106  Q
    |||||| |||||| ||||||| | | |||||||||||||||| ||||||||| ||| | ||||||| || ||||||||||    
T  31789943 accaactggcaaagctcctcttcaagataagtttgagcgagtcggaagtctaccaaaagttaattgtcatgagaaaattt 31790022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 426 - 461
Target Start/End: Original strand, 33823867 - 33823902
Alignment:
Q  426 gtataagaatttcttcttgtatgtgagtagtttttg 461  Q
    ||||||||||||||||||||||||||||||||||||    
T  33823867 gtataagaatttcttcttgtatgtgagtagtttttg 33823902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 291
Target Start/End: Complemental strand, 10400224 - 10400166
Alignment:
Q  233 aaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 291  Q
    ||||||||||| ||||||||||||||| ||||||  ||||||| |||||| ||||||||    
T  10400224 aaatagcttatacataaacatttatatgataagcccttaattatgttgtttatccaaac 10400166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 2548316 - 2548379
Alignment:
Q  227 ttatagaaatagcttatgcataaaca--tttatataataagcgtttaattaagttgttgatcca 288  Q
    ||||||||||| ||||| ||||||||  | |||||||||| |||||||||||||| || |||||    
T  2548316 ttatagaaataacttatacataaacacttatatataataaacgtttaattaagttatttatcca 2548379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 34786663 - 34786577
Alignment:
Q  27 accaaccggcaaaactcctctaccaaataagtttgagcgagtaggaagtctagcaagaattaattgccaagagaaaatttaaatttt 113  Q
    ||||||||||||  ||||||| | | ||||||||||||| || ||||||||| |||  |||||||||||  ||||||||||||||||    
T  34786663 accaaccggcaacgctcctcttcaagataagtttgagcgtgtcggaagtctaccaaagattaattgccagaagaaaatttaaatttt 34786577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 19422380 - 19422315
Alignment:
Q  226 gttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 291  Q
    |||||||||||| ||||| ||||| ||||||||| ||||||| ||||||||| |||| ||||||||    
T  19422380 gttatagaaataacttatacataagcatttatatgataagcgcttaattaagctgtttatccaaac 19422315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 39635461 - 39635408
Alignment:
Q  53 ataagtttgagcgagtaggaagtctagcaagaattaattgccaagagaaaattt 106  Q
    ||||||||||||||||  |||||||| ||| |||||||||||||||||||||||    
T  39635461 ataagtttgagcgagtcagaagtctaccaaaaattaattgccaagagaaaattt 39635408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 7730557 - 7730513
Alignment:
Q  246 ataaacatttatataataagcgtttaattaagttgttgatccaaa 290  Q
    |||||||||||||||||||| | |||||||||||||| |||||||    
T  7730557 ataaacatttatataataagtgcttaattaagttgtttatccaaa 7730513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 9843775 - 9843839
Alignment:
Q  227 ttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 291  Q
    ||||||||||||||||| ||||| || |||||| ||||||  ||| |||||||||| ||||||||    
T  9843775 ttatagaaatagcttatacataagcagttatatgataagcacttatttaagttgtttatccaaac 9843839  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 24160603 - 24160659
Alignment:
Q  226 gttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgtt 282  Q
    |||||||||| |||||||  |||| || |||||| ||||||||||||||||||||||    
T  24160603 gttatagaaaaagcttatttataagcacttatatgataagcgtttaattaagttgtt 24160659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 35752799 - 35752843
Alignment:
Q  66 agtaggaagtctagcaagaattaattgccaagagaaaatttaaat 110  Q
    ||||||||||||| |||||||||||| |||||| |||||||||||    
T  35752799 agtaggaagtctaccaagaattaattaccaagataaaatttaaat 35752843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 24091424 - 24091371
Alignment:
Q  228 tatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgtt 282  Q
    |||||||||||||||||||| | ||||||||| ||||| | ||||||||||||||    
T  24091424 tatagaaatagcttatgcat-agcatttatatgataagtgcttaattaagttgtt 24091371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 55994296 - 55994334
Alignment:
Q  227 ttatagaaatagcttatgcataaacatttatataataag 265  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  55994296 ttatagaaatagcttatacataagcatttatataataag 55994334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 10150716 - 10150652
Alignment:
Q  227 ttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 291  Q
    ||||||||||| ||||| |||||||| |||||||||||| | |||||||||||||| ||| ||||    
T  10150716 ttatagaaataacttatacataaacacttatataataagtgcttaattaagttgtttatctaaac 10150652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 26484193 - 26484257
Alignment:
Q  227 ttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 291  Q
    ||||||||||||||||| ||||| || |||||| ||||  | |||||||||||||| ||||||||    
T  26484193 ttatagaaatagcttatccataagcacttatatgataaatgattaattaagttgtttatccaaac 26484257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 9478261 - 9478221
Alignment:
Q  226 gttatagaaatagcttatgcataaacatttatataataagc 266  Q
    |||||||||||||||||| |||||||| |||||| ||||||    
T  9478261 gttatagaaatagcttatacataaacacttatatgataagc 9478221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 21516301 - 21516255
Alignment:
Q  245 cataaacatttatataataagcgtttaattaagttgttgatccaaac 291  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||    
T  21516301 cataaacatttatgttataagcgtttaattaagttgtttatccaaac 21516255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 30815743 - 30815809
Alignment:
Q  226 gttatagaaatagcttatgcataaac-atttatataataagcgtttaattaagttgttgatccaaac 291  Q
    |||||||||| ||||||  ||||||  | |||||| ||||||| |||||||||||||||||||||||    
T  30815743 gttatagaaaaagcttagacataaagtaattatatgataagcgcttaattaagttgttgatccaaac 30815809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 40357994 - 40358050
Alignment:
Q  226 gttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgtt 282  Q
    |||||||||||||||||| ||||  || |||||||||||||  |||||||| |||||    
T  40357994 gttatagaaatagcttatacatagtcacttatataataagcacttaattaatttgtt 40358050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 40279724 - 40279769
Alignment:
Q  246 ataaacatttatataataagcgtttaattaagttgttgatccaaac 291  Q
    |||||||||||||| ||||||| |||||||| ||||||||||||||    
T  40279724 ataaacatttatattataagcgcttaattaaattgttgatccaaac 40279769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 4558759 - 4558715
Alignment:
Q  227 ttatagaaatagcttatgcataaacatttatataataagcgttta 271  Q
    ||||||||||||||||| |||||||| ||| ||||||| ||||||    
T  4558759 ttatagaaatagcttatacataaacacttacataataaacgttta 4558715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 32181310 - 32181262
Alignment:
Q  227 ttatagaaatagcttatgcataaacatttatataataagcgtttaatta 275  Q
    ||||||||||||||||| |||||||||||||  |||||||  |||||||    
T  32181310 ttatagaaatagcttatacataaacatttattcaataagcacttaatta 32181262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 44617893 - 44617941
Alignment:
Q  224 tagttatagaaatagcttatgcataaacatttatataataagcgtttaa 272  Q
    |||||||||||||||||||| |||||||  |||||||| ||| ||||||    
T  44617893 tagttatagaaatagcttatacataaactgttatataacaagtgtttaa 44617941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 40499783 - 40499848
Alignment:
Q  226 gttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 291  Q
    |||||||||||| ||| | ||||| || |||||| |||||| ||||||||||||||| ||||||||    
T  40499783 gttatagaaataacttgtacataagcacttatatgataagcttttaattaagttgtttatccaaac 40499848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 11095577 - 11095642
Alignment:
Q  226 gttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 291  Q
    ||||||||||||| |||| ||||| || ||||||  |||| ||||| |||||||||| ||||||||    
T  11095577 gttatagaaatagtttatacataatcacttatatggtaagtgtttagttaagttgtttatccaaac 11095642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 15985372 - 15985416
Alignment:
Q  247 taaacatttatataataagcgtttaattaagttgttgatccaaac 291  Q
    ||||||||||||| ||| ||  |||||||||||||||||||||||    
T  15985372 taaacatttatatgatatgctcttaattaagttgttgatccaaac 15985416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 36638708 - 36638644
Alignment:
Q  226 gttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaa 290  Q
    ||||||||||||| |||| ||| ||||  ||||| ||||| | |||||||||||||| |||||||    
T  36638708 gttatagaaatagtttatacattaacacctatatgataagtgcttaattaagttgtttatccaaa 36638644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 35536069 - 35536013
Alignment:
Q  226 gttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgtt 282  Q
    |||||||||||||||||| ||||| | ||||||| ||||||| | ||||||||||||    
T  35536069 gttatagaaatagcttatacataagcctttatatgataagcgctcaattaagttgtt 35536013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 264
Target Start/End: Original strand, 27481402 - 27481440
Alignment:
Q  226 gttatagaaatagcttatgcataaacatttatataataa 264  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  27481402 gttatagaaatagcttatacataaacacttatataataa 27481440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 44348554 - 44348505
Alignment:
Q  229 atagaaatagcttatgcataaacatttatataataagcgtttaattaagt 278  Q
    ||||||||||||||| | |||||| ||| |||||||||| ||||||||||    
T  44348554 atagaaatagcttatacttaaacacttacataataagcgattaattaagt 44348505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 39539870 - 39539934
Alignment:
Q  227 ttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 291  Q
    |||| |||||||||||| || || || |||||| ||||||  |||||||||||||| ||||||||    
T  39539870 ttatcgaaatagcttatacaaaagcagttatatgataagcacttaattaagttgtttatccaaac 39539934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 47528042 - 47528086
Alignment:
Q  227 ttatagaaatagcttatgcataaacatttatataataagcgttta 271  Q
    ||||||||||||||||| |||||||| || ||||||||| |||||    
T  47528042 ttatagaaatagcttatacataaacacttgtataataagtgttta 47528086  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 44237454 - 44237390
Alignment:
Q  227 ttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 291  Q
    ||||| ||||||||||||||||| |||||| || | ||||  |||||||||||||| ||||||||    
T  44237454 ttataaaaatagcttatgcataagcatttagatgagaagcccttaattaagttgtttatccaaac 44237390  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 41159073 - 41159006
Alignment:
Q  224 tagttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 291  Q
    ||||||||| |||| ||||| ||||| || |||||  |||||||||||||||||||| | ||||||||    
T  41159073 tagttataggaataacttatacataagcacttatacgataagcgtttaattaagttggttatccaaac 41159006  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 44488846 - 44488796
Alignment:
Q  226 gttatagaaatagcttatgcataaacatttatataataagcgtttaattaa 276  Q
    |||||||||||||||||| ||||||||  |||| |||||||| ||||||||    
T  44488846 gttatagaaatagcttatacataaacacctatacaataagcgcttaattaa 44488796  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 48528540 - 48528475
Alignment:
Q  226 gttatagaaatagcttatgcataaacatttatataataagcgtttaattaagttgttgatccaaac 291  Q
    |||||||||||||||||| |||||  | |||||| ||||||  |||||| ||||||| ||||||||    
T  48528540 gttatagaaatagcttatacataagtacttatatgataagctcttaattcagttgtttatccaaac 48528475  T

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