View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19539_high_18 (Length: 371)
Name: NF19539_high_18
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19539_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 3 - 355
Target Start/End: Complemental strand, 31346767 - 31346415
Alignment:
| Q |
3 |
caagaatataagattcataatcatgtatttcgaagatcccaaatatgatgcagaactatcattgattagtgggactaaaattgagaatctaagagattaa |
102 |
Q |
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| T |
31346767 |
caagaatataagattcataatcatgtatttagaagatcccaaatatgatgcagaacaatcattgattactggaactaaaattgagaatcgaatagattaa |
31346668 |
T |
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| Q |
103 |
ggtttccattatctacnnnnnnnaaatatgtcttaatattgagcagtgttctgtcctcaacataacttgatcaaccaataaattctcataagaatgtgat |
202 |
Q |
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| T |
31346667 |
ggtttccattatctacttttttgaaatatgtattaatattgagcagttttctgtcctcaacataacttgatcaaccaataaattctcataagaatgtgat |
31346568 |
T |
|
| Q |
203 |
atacatccaatctcatctatctatattctaataaaagtgaaattgcatacatattaaatttcttattgattattcttcatactaacttgagcacttaaca |
302 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31346567 |
atacatccaatcttatctatctatattctaataaaagtgaaattgcatacatattaaatttcttattgattattcttcatactgacttgagcacttaaca |
31346468 |
T |
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| Q |
303 |
aattttcttttattatctaggggtccagaaatgcttcccaaggcctttgcttt |
355 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31346467 |
aattttcttttacattctaggggtccagaaatgcttcccaaggcctttgcttt |
31346415 |
T |
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