View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19539_high_4 (Length: 687)
Name: NF19539_high_4
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19539_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 564; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 20 - 672
Target Start/End: Original strand, 35978822 - 35979467
Alignment:
| Q |
20 |
taagaacaatcttgattcacctgtttttacaattgaagctgaggggccacctcatgacattcgctataaggctacagttgttgttgatgggaaatcgttt |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35978822 |
taagaacaatcttgattcacctgtttttacaattgaagctgaggggccacctcgtgacattcgctataatgctacagttgttgttgatgggaaatcgttt |
35978921 |
T |
|
| Q |
120 |
aaaagccctacatctttcgatactagaaaagaggcagagcaggctgctctacaaattgttgacatgtttcaggcaagatcagcccttgtaatttttcttg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35978922 |
aaaagccctacatctttcgatactagaaaagaggcagagcaggctgctctacaaattgttgacatgtttcaggcaagatcagcccttgtaatttttcttg |
35979021 |
T |
|
| Q |
220 |
tgattctaacttgacttttatttt----tggatattttatgatcataaatccataaccagatgttggagttggaggttacatatcaaaatagaacttaat |
315 |
Q |
| |
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||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35979022 |
tgattctaacttgacttttttttttttttggatattttatgatcataaatccataaccagatgttggagttggaggttacatatcaaaatagaacttaat |
35979121 |
T |
|
| Q |
316 |
ctctttgacctattagtgtgttagtctttttaatgaaacctcatagtgaactaaacctttcaagtacaggctttcaagccttgtcagactttcgagaagc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35979122 |
ctctttgacctattagtgtgttagtctttttaatgaaacctcatagtgaactaaacctttcaagtacaggctttcaagccttgtcagactttcgagaagc |
35979221 |
T |
|
| Q |
416 |
ccagatcagctcttaataataggcatatggcagctaaaaggaaaaactcagacctaacatttttaaagtaggccggacttaggcattacaaaacctaact |
515 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35979222 |
ccagatcagctcttaataataggcatatgacagctaaaaggaaaaactcagacctaacatttttaaagtaggccggacttaggcgttacaaaacctaact |
35979321 |
T |
|
| Q |
516 |
tagactagcatattctcaccccaaataatgacttgattcagcagtaataatataatagtatatcaactttgtttgcatgtgtcaaacttattcaagttta |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35979322 |
tagactagcatattctcaccccaaataatgacttgattcatcagtaataatataatagtatatcaactttgtttgcatgtgtcaaacttattcaa----- |
35979416 |
T |
|
| Q |
616 |
tttacatgtttatgtttttcctgcatg-aaaaaatttaaatttgaatttcgatctgtg |
672 |
Q |
| |
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|||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
35979417 |
-------gtttatgtttttcctgcatgaaaaaaatttaaaattgaatttcgatctgtg |
35979467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 35956139 - 35956309
Alignment:
| Q |
21 |
aagaacaatcttgattcacctgtttttacaattgaagctgaggggccacctcatgacattcgctataaggctacagttgttgttgatgggaaatcgttta |
120 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||| ||| |
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| T |
35956139 |
aagaacgatcttgatcaacctgtttttacaattaaaactgaggggccacctcatgacattcgctataaagctattgttgttattgatgggaaatcatttg |
35956238 |
T |
|
| Q |
121 |
aaagccctacatctttcgatactagaaaagaggcagagcaggctgctctacaaattgttgacatgtttcag |
191 |
Q |
| |
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||||||| ||||||||| | |||| |||||||||||||||||||||| | || |||||| |||||||||| |
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| T |
35956239 |
aaagcccaacatctttcaacactataaaagaggcagagcaggctgctgcaaaatttgttggcatgtttcag |
35956309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 35971702 - 35971842
Alignment:
| Q |
24 |
aacaatcttgattcacctgtttttacaattgaagctgaggggccacctcatgacattcgctataaggctacagttgttgttgatgggaaatcgtttaaaa |
123 |
Q |
| |
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|||||||||||| |||||||||||||| || || ||||||||| |||||||||| |||| ||||| |||| |||||| ||||||| ||||| ||| ||| |
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| T |
35971702 |
aacaatcttgatccacctgtttttacatttaaaactgaggggctacctcatgactttcgttataaagctattgttgttattgatggaaaatcatttgaaa |
35971801 |
T |
|
| Q |
124 |
gccctacatctttcgatactagaaaagaggcagagcaggct |
164 |
Q |
| |
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|||| |||| ||| |||||| | ||||||||||||||||| |
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| T |
35971802 |
gcccaacatttttaaatactatagaagaggcagagcaggct |
35971842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 35968748 - 35968886
Alignment:
| Q |
24 |
aacaatcttgattcacctgtttttacaattgaagctgaggggccacctcatgacattcgctataaggctacagttgttgttgatgggaaatcgtttaaaa |
123 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||| ||||||||| |||||||| ||| |||||||||| |||||| |||||| |||||| || ||| |
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| T |
35968748 |
aacaatcttgattcacctgttttgacaactgaagccgaggggccatctcatgacgttcattataaggctagtgttgttattgatgcgaaatcattcgaaa |
35968847 |
T |
|
| Q |
124 |
gccctacatctttcgatactagaaaagaggcagagcagg |
162 |
Q |
| |
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|||||| || |||| | |||| |||||||| |||||||| |
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| T |
35968848 |
gccctatatttttcaacactaaaaaagaggaagagcagg |
35968886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 463 - 615
Target Start/End: Original strand, 35969138 - 35969296
Alignment:
| Q |
463 |
tcagacctaacatttttaaagtaggccggacttaggcattacaaaacctaacttagactagcatattctcacccca-aataatgacttgattcagcagta |
561 |
Q |
| |
|
||||||||| ||| |||||||||||||||||| |||| || ||| ||||| ||||||||| |||||| ||||||| || |||| | || |||| || || |
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| T |
35969138 |
tcagacctatcatctttaaagtaggccggactcaggccttgcaatacctagcttagactaacatattatcaccccctaacaatgtcctggttcatcatta |
35969237 |
T |
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| Q |
562 |
ata-----atataatagtatatcaactttgtttgcatgtgtcaaacttattcaagttta |
615 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35969238 |
atagactaaagtaatagtatatcaactttgtttgcatgtgtcaaacttattcaagttta |
35969296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 189 - 347
Target Start/End: Original strand, 35968883 - 35969041
Alignment:
| Q |
189 |
caggcaagatcagcccttgtaatttttcttgtgattctaacttgac---ttttatttttggatattttatgatcat-aaatccataaccagatgttggag |
284 |
Q |
| |
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|||| |||||||||||||||||||| | ||||||||||| || || |||||||||| |||||||||||||| ||||| ||||| ||||||||||| |
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| T |
35968883 |
caggtaagatcagcccttgtaatttcttatgtgattctaaattaacattttttattttttt-tattttatgatcatcaaatcgataactagatgttggag |
35968981 |
T |
|
| Q |
285 |
ttggaggttacatatcaaaatagaacttaatctctttgacctattagtgtgttagtcttttta |
347 |
Q |
| |
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| ||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
35968982 |
---ggtattatatatcaaaatagaacttaatctcattgacctattagtgtgtcagtcttttta |
35969041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 35951688 - 35951772
Alignment:
| Q |
83 |
ctataaggctacagttgttgttgatgggaaatcgtttaaaagccctacatctttcgatactagaaaagaggcagagcaggctgct |
167 |
Q |
| |
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|||||| ||||| |||||| |||||| |||||| ||| |||||||||||| |||| | ||| |||||||||||| ||||||||| |
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| T |
35951688 |
ctataaagctactgttgttattgatgagaaatcatttgaaagccctacatttttcaactctataaaagaggcagaacaggctgct |
35951772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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