View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19539_high_7 (Length: 508)

Name: NF19539_high_7
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19539_high_7
NF19539_high_7
[»] chr5 (4 HSPs)
chr5 (14-508)||(32795339-32795827)
chr5 (160-508)||(19670502-19670849)
chr5 (263-370)||(32796346-32796453)
chr5 (244-342)||(26896578-26896676)
[»] chr1 (6 HSPs)
chr1 (225-508)||(22827041-22827328)
chr1 (225-350)||(22840959-22841084)
chr1 (225-325)||(22826646-22826746)
chr1 (168-280)||(20260903-20261014)
chr1 (160-210)||(26207059-26207109)
chr1 (244-332)||(24272755-24272843)
[»] chr6 (14 HSPs)
chr6 (167-508)||(11678672-11679008)
chr6 (225-508)||(27340619-27340903)
chr6 (225-508)||(27401359-27401643)
chr6 (244-501)||(2921875-2922136)
chr6 (245-350)||(13558009-13558114)
chr6 (225-347)||(2923172-2923295)
chr6 (225-326)||(13556018-13556119)
chr6 (244-335)||(16403529-16403619)
chr6 (171-332)||(11677130-11677290)
chr6 (241-308)||(22879999-22880066)
chr6 (244-338)||(16910129-16910223)
chr6 (322-369)||(11676986-11677033)
chr6 (241-308)||(22898114-22898181)
chr6 (244-354)||(14721695-14721804)
[»] scaffold0065 (1 HSPs)
scaffold0065 (160-404)||(34631-34873)
[»] chr7 (8 HSPs)
chr7 (225-358)||(11269939-11270072)
chr7 (225-350)||(7961767-7961892)
chr7 (160-270)||(11269753-11269862)
chr7 (225-280)||(36208004-36208059)
chr7 (283-353)||(1103145-1103215)
chr7 (170-270)||(11280342-11280442)
chr7 (316-365)||(40279382-40279430)
chr7 (250-334)||(1716668-1716752)
[»] chr3 (5 HSPs)
chr3 (167-358)||(25889606-25889789)
chr3 (225-354)||(30046404-30046534)
chr3 (225-336)||(37133785-37133896)
chr3 (313-365)||(25578998-25579051)
chr3 (261-334)||(31141410-31141483)
[»] chr4 (7 HSPs)
chr4 (225-338)||(27272573-27272687)
chr4 (170-358)||(50887366-50887545)
chr4 (225-354)||(53472556-53472683)
chr4 (231-354)||(53469673-53469796)
chr4 (244-331)||(10395972-10396059)
chr4 (244-336)||(32015167-32015259)
chr4 (244-354)||(29235155-29235265)
[»] chr2 (5 HSPs)
chr2 (225-354)||(8761186-8761316)
chr2 (247-354)||(37965516-37965624)
chr2 (257-345)||(10128496-10128584)
chr2 (289-350)||(15140798-15140859)
chr2 (244-328)||(25550091-25550174)
[»] scaffold0007 (1 HSPs)
scaffold0007 (259-332)||(260213-260286)
[»] chr8 (1 HSPs)
chr8 (244-300)||(42001908-42001964)


Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 14 - 508
Target Start/End: Original strand, 32795339 - 32795827
Alignment:
Q  14 aatattaagaacaaaaataaccttaatcaaatttcccttttttaaatatatctcataaaaatatctgttgaagaatgaaaagggaataatctgtcaaact 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32795339 aatattaagaacaaaaataaccttaatcaaatttcccttttttaaatatatctcataaaaatatctgttgaagaatgaagagggaataatctgtcaaact 32795438  T
Q  114 atttgtgttgaaacatctgaactaaatgctagagttgagcataaactataaaaaa-cagaaagaaaggaattgtataatttaattaataattacatattt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  32795439 atttgtgttgaaacatctgaactaaatgctagagttgagcataaactataaaaaaacagaaagaaaggaattgtataatttaattaataattacatatt- 32795537  T
Q  213 acatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaag 312  Q
    ||||      | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||    
T  32795538 acat------gatagtagaggtaacgttagttatagcaaaacccactaactattggtacaagtaatactgacacgcaagacttttattaatatgactaag 32795631  T
Q  313 cctttgcatatttcttcatattatccaatgtgggacattttctcattattattgatatcctcccgcaagttgtattgtctgaaagagagatgcaacttgg 412  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32795632 tctttgcatatttcttcatattatccgatgtgggacattttctcattattattgatatcctcccgcaagttgtattgtctgaaagagagatgcaacttgg 32795731  T
Q  413 acagtaagtaatcgaacctaggacgaagcaggggtttggctagaatatcagcaagttgatcattggtagaaacaaaggatacttgaaacttgccat 508  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32795732 acagtaagtaatcgaacctaggacgaagcaggggtttggttagaatatcagcaagttgatcattggtagaaacaaaggatacttgaaacttgccat 32795827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 160 - 508
Target Start/End: Complemental strand, 19670849 - 19670502
Alignment:
Q  160 tataaaaaacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccact 259  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||| ||  || |||| |   |||||||||||||| ||| ||||||||||||||||    
T  19670849 tataagaaacagaaagaaaggaattgtataatgtaattaataattacagatc-acgtatactgaatagtagaggtaacgctagctatagcaaaacccact 19670751  T
Q  260 aactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcatt 359  Q
    |||||||||| ||||||||||  ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  19670750 aactattggtacaagtaatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcatattatcttatgtgagacattttctcatt 19670651  T
Q  360 attattgatatcctcccgcaagttgtattgtctgaaagagagatgcaacttggacagtaagtaatcgaacctaggacgaagcaggggtttggctagaata 459  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||     
T  19670650 attattgatatcctcccgcaagttgtatggtctgaaagagagttgcaacttggacaataagtaatcgaacttaggatgaagcaggggtttggttagaatt 19670551  T
Q  460 tcagcaagttgatcattggtagaaacaaaggatacttgaaacttgccat 508  Q
    ||| |||||||||||| |||||||||||| |||||| ||||||||||||    
T  19670550 tcaacaagttgatcatcggtagaaacaaatgatactcgaaacttgccat 19670502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 263 - 370
Target Start/End: Original strand, 32796346 - 32796453
Alignment:
Q  263 tattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcattatt 362  Q
    |||| ||||||| |||||  ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  32796346 tatttgtgcaaggaatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcatattatccgatctgggacattttctcattatt 32796445  T
Q  363 attgatat 370  Q
    ||||||||    
T  32796446 attgatat 32796453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 342
Target Start/End: Complemental strand, 26896676 - 26896578
Alignment:
Q  244 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatg 342  Q
    ||||||||||| || ||||||||  |||||| |||||  ||||||||    |||||| ||||| | ||| |||||||||||||||| |||| |||||||    
T  26896676 tatagcaaaacacattaactattaatgcaagaaatactaacacacaatgtctttatttatatggccaagtctttgcatatttcttcctattctccaatg 26896578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 178; Significance: 9e-96; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 225 - 508
Target Start/End: Original strand, 22827041 - 22827328
Alignment:
Q  225 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 324  Q
    ||||||| |||| | ||| |||| |||||||||||||||||||||||||| ||||   ||||||||| |||||||| ||||||| || ||||||||||||    
T  22827041 tagtagaagtaatgctagctataacaaaacccactaactattggtgcaagaaatatgaacacacaaggcttttatttatatgaccaaacctttgcatatt 22827140  T
Q  325 tcttcatattatccaatgtgggacat-tttc---tcattattattgatatcctcccgcaagttgtattgtctgaaagagagatgcaacttggacagtaag 420  Q
    |||||||||||||| |||||||||||  |||   | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  22827141 tcttcatattatccgatgtgggacataattctaattattattattgatatcctcccgcaagttgtatggtctgaaagagagatgcaacttggacaataag 22827240  T
Q  421 taatcgaacctaggacgaagcaggggtttggctagaatatcagcaagttgatcattggtagaaacaaaggatacttgaaacttgccat 508  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  22827241 taatcaaacctaggacgaagcaggggtttggttagaatatcagcaagttgatcatcggtagaaacaaaggatactcgaaacttgccat 22827328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 225 - 350
Target Start/End: Complemental strand, 22841084 - 22840959
Alignment:
Q  225 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 324  Q
    ||||||| |||| | ||| ||||| ||||||||||||||||||||||||| |||||  ||||||||| ||||||||  |||||| |||||||||||||||    
T  22841084 tagtagaagtaatgctagctatagtaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttttatgaccaagcctttgcatatt 22840985  T
Q  325 tcttcatattatccaatgtgggacat 350  Q
    |||||||||||||| |||||||||||    
T  22840984 tcttcatattatccgatgtgggacat 22840959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 225 - 325
Target Start/End: Original strand, 22826646 - 22826746
Alignment:
Q  225 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 324  Q
    ||||||| |||| | ||| |||||||||| |||||||||||||||||||| |||||  ||||| ||| |||||||| ||||||| ||||||||||| |||    
T  22826646 tagtagaagtaatgctagctatagcaaaatccactaactattggtgcaagaaatactaacacataaggcttttatttatatgaccaagcctttgcagatt 22826745  T
Q  325 t 325  Q
    |    
T  22826746 t 22826746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 280
Target Start/End: Original strand, 20260903 - 20261014
Alignment:
Q  168 acagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattg 267  Q
    ||||||||||| | |||||||||| ||||||||||||||| | ||||||||| |   |||||||||||||| ||||||||||||||  || || ||||||    
T  20260903 acagaaagaaatggattgtataatgtaattaataattacaga-ttacatatactgaatagtagaggtaacgctagttatagcaaaattcattagctattg 20261001  T
Q  268 gtgcaagtaatac 280  Q
     |||||| |||||    
T  20261002 atgcaagaaatac 20261014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 26207059 - 26207109
Alignment:
Q  160 tataaaaaacagaaagaaaggaattgtataatttaattaataattacatat 210  Q
    |||||| || |||||||||||||||||||||| ||||||||||||||||||    
T  26207059 tataaagaatagaaagaaaggaattgtataatgtaattaataattacatat 26207109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 24272843 - 24272755
Alignment:
Q  244 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcata 332  Q
    ||||| ||||| ||||||||||||||||||| |||||  ||||||||| | |||||  ||||    ||| |||||||||||||||||||    
T  24272843 tatagtaaaactcactaactattggtgcaagaaatactaacacacaaggcctttatatatattgtcaagtctttgcatatttcttcata 24272755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 169; Significance: 2e-90; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 167 - 508
Target Start/End: Complemental strand, 11679008 - 11678672
Alignment:
Q  167 aacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactatt 266  Q
    ||||||||||||||||||| ||||| ||||| |||| |||||||| ||| ||| |   |||||||||||| | ||  |||||||||| ||||||    ||    
T  11679008 aacagaaagaaaggaattgaataatgtaattgataaatacatatt-acaaatactgaatagtagaggtaatgctaactatagcaaaatccacta----tt 11678914  T
Q  267 ggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcattattattg 366  Q
    ||||  || |||||  |||||||||| ||||||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11678913 ggtgttagaaatactaacacacaagagttttatttacatgaccaagcctttgcatatttcttcatattatccgatgtgggacattttctcattattattg 11678814  T
Q  367 atatcctcccgcaagttgtattgtctgaaagagagatgcaacttggacagtaagtaatcgaacctaggacgaagcaggggtttggctagaatatcagcaa 466  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||| |||||||| ||||||||||| || ||||| ||||| ||||||||||||||    
T  11678813 atatcctcccgcaagttgtatggtttgaaagagagatgcaacttggacaataagtaatagaacctaggacaaaacagggatttggttagaatatcagcaa 11678714  T
Q  467 gttgatcattggtagaaacaaaggatacttgaaacttgccat 508  Q
    ||||||||| || ||||| |||||||| | ||||||||||||    
T  11678713 gttgatcatcggcagaaagaaaggatagtcgaaacttgccat 11678672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 225 - 508
Target Start/End: Original strand, 27340619 - 27340903
Alignment:
Q  225 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 324  Q
    ||||||| |||| | |||||||||||||||||||||||||||||| ||||  ||||  |||||||    ||||||| ||||||| |||||||||||||||    
T  27340619 tagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatactaacacacagt--ttttatttatatgaccaagcctttgcatatt 27340716  T
Q  325 tcttcatattatccaatgtgggacatt-ttc---tcattattattgatatcctcccgcaagttgtattgtctgaaagagagatgcaacttggacagtaag 420  Q
    |||||||||||||| |||||||||||| |||   | ||||||||||| |||||||||||| |||||| || ||| |||||||||||||||||||||||||    
T  27340717 tcttcatattatccgatgtgggacattattctaattattattattgaaatcctcccgcaa-ttgtatggtttgagagagagatgcaacttggacagtaag 27340815  T
Q  421 taatcgaacctaggacgaagcaggggtttggctagaatatcagcaagttgatcattggtagaaacaaaggatacttgaaacttgccat 508  Q
    || |||||||||||| ||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||    
T  27340816 tactcgaacctaggatgaagcaggggtttggttagaatatcagcaagttgatcatcgatagaaacaaaggatactcgaaacttgccat 27340903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 225 - 508
Target Start/End: Original strand, 27401359 - 27401643
Alignment:
Q  225 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 324  Q
    ||||||| |||| | |||||||||||||||||||||||||||||| ||||  ||||  |||||||    ||||||| ||||||| |||||||||||||||    
T  27401359 tagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatactaacacacagt--ttttatttatatgaccaagcctttgcatatt 27401456  T
Q  325 tcttcatattatccaatgtgggacatt-ttc---tcattattattgatatcctcccgcaagttgtattgtctgaaagagagatgcaacttggacagtaag 420  Q
    |||||||||||||| |||||||||||| |||   | ||||||||||| |||||||||||| |||||| || ||| |||||||||||||||||||||||||    
T  27401457 tcttcatattatccgatgtgggacattattctaattattattattgaaatcctcccgcaa-ttgtatggtttgagagagagatgcaacttggacagtaag 27401555  T
Q  421 taatcgaacctaggacgaagcaggggtttggctagaatatcagcaagttgatcattggtagaaacaaaggatacttgaaacttgccat 508  Q
    || |||||||||||| ||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||    
T  27401556 tactcgaacctaggatgaagcaggggtttggttagaatatcagcaagttgatcatcgatagaaacaaaggatactcgaaacttgccat 27401643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 244 - 501
Target Start/End: Original strand, 2921875 - 2922136
Alignment:
Q  244 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgt 343  Q
    ||||||||||||||||||||||||||||||| |||||  ||||| |||||||||||| |||| || ||| | ||||||||||||||||||||||| ||||    
T  2921875 tatagcaaaacccactaactattggtgcaagaaatactaacacataagacttttatttatattaccaagtcattgcatatttcttcatattatccgatgt 2921974  T
Q  344 gggacat-tttctcattatta---ttgatatcctcccgcaagttgtattgtctgaaagagagatgcaacttggacagtaagtaatcgaacctaggacgaa 439  Q
    | |||||   ||| |||||||   |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  2921975 gagacataaatctaattattattgttgatatcctcctgcaagttgtatggtctgaaagagagatgcaacttggacagtaagtaatcgaacctagaatgaa 2922074  T
Q  440 gcaggggtttggctagaatatcagcaagttgatcattggtagaaacaaaggatacttgaaac 501  Q
    | |||||||||| ||||||||||  ||||||||||| | ||||||||||||||||| |||||    
T  2922075 gtaggggtttggttagaatatcaataagttgatcatcgttagaaacaaaggatactcgaaac 2922136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 245 - 350
Target Start/End: Original strand, 13558009 - 13558114
Alignment:
Q  245 atagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtg 344  Q
    ||||||||| |||||||||||||||||| | |||||  ||||||||  |||||||| ||||||| ||||||||||||||||||||||||||||| |||||    
T  13558009 atagcaaaatccactaactattggtgcatgaaatactaacacacaatgcttttatttatatgaccaagcctttgcatatttcttcatattatccgatgtg 13558108  T
Q  345 ggacat 350  Q
    ||||||    
T  13558109 ggacat 13558114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 225 - 347
Target Start/End: Original strand, 2923172 - 2923295
Alignment:
Q  225 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcc-tttgcatat 323  Q
    ||||||| ||||  |||| |||| ||| |||||||||||||| ||||||| | |||  |||||||||||||||||| ||||||| ||||| |||||||||    
T  2923172 tagtagaagtaatattagctataacaagacccactaactattagtgcaagaagtactaacacacaagacttttatttatatgaccaagccttttgcatat 2923271  T
Q  324 ttcttcatattatccaatgtggga 347  Q
    ||||||||||||||| ||||||||    
T  2923272 ttcttcatattatccgatgtggga 2923295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 225 - 326
Target Start/End: Original strand, 13556018 - 13556119
Alignment:
Q  225 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 324  Q
    ||||||| |||| | ||| |||||||||||||| |||||||||||||||| |||||  ||||||||| |||||||| ||||||| |||||||||||||||    
T  13556018 tagtagaagtaatgctagctatagcaaaacccagtaactattggtgcaagaaatactaacacacaaggcttttatttatatgaccaagcctttgcatatt 13556117  T
Q  325 tc 326  Q
    ||    
T  13556118 tc 13556119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 244 - 335
Target Start/End: Complemental strand, 16403619 - 16403529
Alignment:
Q  244 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatatta 335  Q
    |||||||||| ||||||| ||||||||||| |||||   |||||||||||||||||| ||||||||||| | ||||||||||||||||||||    
T  16403619 tatagcaaaatccactaattattggtgcaaataatataaacacacaagacttttatttatatgactaagtc-ttgcatatttcttcatatta 16403529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 171 - 332
Target Start/End: Complemental strand, 11677290 - 11677130
Alignment:
Q  171 gaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggtg 270  Q
    ||||||||||||||| ||||| | |||||||| ||||   ||||| |||  |  |||||||||||| | ||| ||||| ||||||| |||||||||||||    
T  11677290 gaaagaaaggaattgaataatgtcattaataaatacaagattacaaatacgaa-tagtagaggtaatgctagctataggaaaacccgctaactattggtg 11677192  T
Q  271 caagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcata 332  Q
      || |||||  |||||||||| ||||||| ||||||  || ||||||||||||||||||||    
T  11677191 ttagaaatactaacacacaagagttttatttatatgatcaatcctttgcatatttcttcata 11677130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 22879999 - 22880066
Alignment:
Q  241 agttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgac 308  Q
    ||||||||||||||||||||| |||||||||||| ||||   |||||||| || |||||| |||||||    
T  22879999 agttatagcaaaacccactaattattggtgcaagaaatattaacacacaaaacctttatttatatgac 22880066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 338
Target Start/End: Original strand, 16910129 - 16910223
Alignment:
Q  244 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatcc 338  Q
    ||||||||||| ||| ||||||||| ||||  |||||  |||||||| ||||||||| |||   | ||| ||||||||||| |||||||||||||    
T  16910129 tatagcaaaacacacaaactattggcgcaacaaatactaacacacaatacttttatttataatgccaagtctttgcatattccttcatattatcc 16910223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 369
Target Start/End: Complemental strand, 11677033 - 11676986
Alignment:
Q  322 atttcttcatattatccaatgtgggacattttctcattattattgata 369  Q
    ||||||||||||||||| ||||| |||||||||  |||||||||||||    
T  11677033 atttcttcatattatccgatgtgagacattttcaaattattattgata 11676986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 22898114 - 22898181
Alignment:
Q  241 agttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgac 308  Q
    ||||||||||||||||||||| |||||||||||| ||||   ||||| || || |||||| |||||||    
T  22898114 agttatagcaaaacccactaattattggtgcaagaaatattaacacaaaaaacctttatttatatgac 22898181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 354
Target Start/End: Complemental strand, 14721804 - 14721695
Alignment:
Q  244 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgt 343  Q
    |||| ||||||||| ||||||||| |||||| |||||  | | ||||| |||||||| ||| | | || | ||||||||||||||  |||| ||| ||||    
T  14721804 tataacaaaacccattaactattgctgcaagaaatacttataaacaaggcttttatttataggccaaatc-tttgcatatttctttctattctccgatgt 14721706  T
Q  344 gggacattttc 354  Q
    |||||||||||    
T  14721705 gggacattttc 14721695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 160 - 404
Target Start/End: Complemental strand, 34873 - 34631
Alignment:
Q  160 tataaaaaacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccact 259  Q
    ||||| ||||||||||||| ||||||||||||  |||| |||||||||  |||||| ||| ||  ||||||| ||||  |||| ||||||||||||||||    
T  34873 tataagaaacagaaagaaatgaattgtataatgaaattgataattacaagtttacaaatactaaatagtagaagtaatattagctatagcaaaacccact 34774  T
Q  260 aactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcatt 359  Q
    |||||||||||| | ||||||  |||||  ||||||||||| |||||||||||| ||| ||||||| || |||||||| |||||| ||||||||||||||    
T  34773 aactattggtgctaataatactaacaca--agacttttatttatatgactaagcattttcatatttttttatattatctaatgtgagacattttctcatt 34676  T
Q  360 attattgatatcctcccgcaagttgtattgtctgaaagagagatg 404  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||    
T  34675 attattgatatcctcccgcaagttgtatggtctgaaagagtgatg 34631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 225 - 358
Target Start/End: Complemental strand, 11270072 - 11269939
Alignment:
Q  225 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 324  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||| ||||||  ||||||||| |||||||| ||||||| || | |||  |||||    
T  11270072 tagtagaggtaacactagttatagcaaaacccactaactattggtgcaactaatactaacacacaaggcttttatttatatgaccaaacttttttatatt 11269973  T
Q  325 tcttcatattatccaatgtgggacattttctcat 358  Q
    |||||||||||||| |||||||||||||||||||    
T  11269972 tcttcatattatccgatgtgggacattttctcat 11269939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 225 - 350
Target Start/End: Complemental strand, 7961892 - 7961767
Alignment:
Q  225 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 324  Q
    ||||||| |||| | ||| ||||||||||||||||||||||||||||||| |||||  ||||||||| |||||||| ||||||| || ||||||||||||    
T  7961892 tagtagaagtaatgctagctatagcaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttatatgaccaaacctttgcatatt 7961793  T
Q  325 tcttcatattatccaatgtgggacat 350  Q
    |||||||||||| | |||||||||||    
T  7961792 tcttcatattatgcgatgtgggacat 7961767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 160 - 270
Target Start/End: Original strand, 11269753 - 11269862
Alignment:
Q  160 tataaaaaacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccact 259  Q
    ||||||||| ||||||||| |||||||||||| ||||| ||||||||| | ||||| ||| ||  |||||||||||||| ||| |||||||||||  |||    
T  11269753 tataaaaaatagaaagaaatgaattgtataatgtaattgataattacaga-ttacagatactaactagtagaggtaacgctagctatagcaaaacttact 11269851  T
Q  260 aactattggtg 270  Q
    |||||||||||    
T  11269852 aactattggtg 11269862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 36208059 - 36208004
Alignment:
Q  225 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaatac 280  Q
    |||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||    
T  36208059 tagtagagctaacgctagctatagcaaaacccactaactattggtgcaagaaatac 36208004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 283 - 353
Target Start/End: Complemental strand, 1103215 - 1103145
Alignment:
Q  283 acacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacatttt 353  Q
    ||||||||| |||||||| ||||| | ||| |||| |||||||||||||||||||| ||||||||| ||||    
T  1103215 acacacaaggcttttatttatatggccaagtctttacatatttcttcatattatccgatgtgggacgtttt 1103145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 270
Target Start/End: Complemental strand, 11280442 - 11280342
Alignment:
Q  170 agaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggt 269  Q
    |||||||||| ||||||||||| ||||| ||||||||| |||     ||| |   |||||||||||||| ||| |||||||||||| |||||||||||||    
T  11280442 agaaagaaagaaattgtataatgtaattgataattacagattacgggatactgtctagtagaggtaacgctagctatagcaaaacctactaactattggt 11280343  T
Q  270 g 270  Q
    |    
T  11280342 g 11280342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 40279430 - 40279382
Alignment:
Q  316 ttgcatatttcttcatattatccaatgtgggacattttctcattattatt 365  Q
    |||| |||||||||||| |||||||||||| ||||||||| |||||||||    
T  40279430 ttgcttatttcttcataatatccaatgtggaacattttct-attattatt 40279382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 334
Target Start/End: Original strand, 1716668 - 1716752
Alignment:
Q  250 aaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatatt 334  Q
    ||||| |||||||||||| |||||| ||||   ||||||||||| |||||| |||||   ||| |||| ||||||| ||||||||    
T  1716668 aaaactcactaactattgatgcaagaaatattaacacacaagacctttatttatatggtcaagtctttacatattttttcatatt 1716752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 167 - 358
Target Start/End: Complemental strand, 25889789 - 25889606
Alignment:
Q  167 aacagaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactatt 266  Q
    ||||||||||||||||||||||||| ||||| ||||        ||||| | | ||  || ||||||||  | ||| |||||||||||||||||||||||    
T  25889789 aacagaaagaaaggaattgtataatgtaattgataa--------ttacaaagactaaataatagaggtactgctagctatagcaaaacccactaactatt 25889698  T
Q  267 ggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcat 358  Q
    |||||||| |||||  ||| |||||||||||||| ||||||| || ||||||||||  ||||||| |||||| |||||||||||||||||||    
T  25889697 ggtgcaagaaatactaacatacaagacttttatttatatgaccaaacctttgcataactcttcatgttatccgatgtgggacattttctcat 25889606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 225 - 354
Target Start/End: Complemental strand, 30046534 - 30046404
Alignment:
Q  225 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcata-- 322  Q
    |||||||||||||| ||| |||||||||||| |||||||||| || |||| |||||  ||||||||  |||||||| |||||   ||| |||||||||      
T  30046534 tagtagaggtaacgctagctatagcaaaaccgactaactatt-gtacaagaaatactaacacacaaagcttttatttatatggtcaagtctttgcatatt 30046436  T
Q  323 tttcttcatattatccaatgtgggacattttc 354  Q
    ||| |||||||||||| || || |||||||||    
T  30046435 ttttttcatattatccgatatgagacattttc 30046404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 336
Target Start/End: Original strand, 37133785 - 37133896
Alignment:
Q  225 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 324  Q
    |||||||| |||| |||||||||||||||  |||||||||||| || ||| |||||  | |||||||||||||||| ||| | ||||  ||| | |||||    
T  37133785 tagtagagttaacattagttatagcaaaattcactaactattgatgtaagaaatactaatacacaagacttttattcatacggctaaatcttcgtatatt 37133884  T
Q  325 tcttcatattat 336  Q
    | ||||||||||    
T  37133885 ttttcatattat 37133896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 25578998 - 25579051
Alignment:
Q  313 cctttgcatatttcttcatattatccaatgtgggacatt-ttctcattattatt 365  Q
    |||||||||||||||||||||||||| ||||| |||||| |||| |||||||||    
T  25578998 cctttgcatatttcttcatattatccgatgtgagacattattctaattattatt 25579051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 261 - 334
Target Start/End: Complemental strand, 31141483 - 31141410
Alignment:
Q  261 actattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatatt 334  Q
    |||||||||| ||| |||||  |||| ||||||||||||| ||||| ||||  |||||||||||||||| ||||    
T  31141483 actattggtgtaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctatt 31141410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 225 - 338
Target Start/End: Complemental strand, 27272687 - 27272573
Alignment:
Q  225 tagtagaggtaacgttagttatagcaaaa-cccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatat 323  Q
    ||||||| |||| | ||| |||||||||| ||||||||||||||||||||| |||||  |||||||||||||||||| ||||||| || |||||||||||    
T  27272687 tagtagaagtaatgctagctatagcaaaaacccactaactattggtgcaagaaatactaacacacaagacttttatttatatgaccaaacctttgcatat 27272588  T
Q  324 ttcttcatattatcc 338  Q
    |||||||||||||||    
T  27272587 ttcttcatattatcc 27272573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 170 - 358
Target Start/End: Original strand, 50887366 - 50887545
Alignment:
Q  170 agaaagaaaggaattgtataatttaattaataattacatatttacatataataggtagtagaggtaacgttagttatagcaaaacccactaactattggt 269  Q
    |||||||||||||||||||||| ||||| ||||||||||||        | ||  ||||||||||||   ||| ||||||||||||||||||||||| ||    
T  50887366 agaaagaaaggaattgtataatgtaattgataattacatat--------actaaatagtagaggtaatactagctatagcaaaacccactaactattagt 50887457  T
Q  270 gcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacattttctcat 358  Q
    | ||| || ||| || |||||||| |||||| ||||| | |||||||||||||||| |||||||||| | ||| |||||||||||||||    
T  50887458 gtaagcaaaaccaacgcacaagacatttatttatatggccaagcctttgcatattt-ttcatattattcgatgcgggacattttctcat 50887545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 225 - 354
Target Start/End: Original strand, 53472556 - 53472683
Alignment:
Q  225 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatt 324  Q
    |||||||||||||| ||| ||||||||||||||||||| ||||||||| | |||||  |||||||| ||||||||| ||||| | ||| |||||||||||    
T  53472556 tagtagaggtaacgctagctatagcaaaacccactaaccattggtgcatgaaatactaacacacaa-acttttatttatatggc-aagtctttgcatatt 53472653  T
Q  325 tcttcatattatccaatgtgggacattttc 354  Q
    ||||| |||||||| |||||| ||||||||    
T  53472654 tcttcgtattatccgatgtggaacattttc 53472683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 231 - 354
Target Start/End: Original strand, 53469673 - 53469796
Alignment:
Q  231 aggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttca 330  Q
    ||||||| || | ||||| |||| ||||||||||||| | |||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||    
T  53469673 aggtaacattggctatagtaaaatccactaactattgattcaagaaatactaacacacaagacttttatttatatgaccaagtctttgcatatttcttca 53469772  T
Q  331 tattatccaatgtgggacattttc 354  Q
    |||||||  |||| | ||||||||    
T  53469773 tattatctgatgtagaacattttc 53469796  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 244 - 331
Target Start/End: Complemental strand, 10396059 - 10395972
Alignment:
Q  244 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcat 331  Q
    ||||||| |||||||||||||||| |||||| |||||  ||||||||| |||||||| ||||| |  || ||||||||||||||||||    
T  10396059 tatagcataacccactaactattgatgcaagaaatactaacacacaaggcttttatttatatggccgagtctttgcatatttcttcat 10395972  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 244 - 336
Target Start/End: Complemental strand, 32015259 - 32015167
Alignment:
Q  244 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattat 336  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||| || |||||| || |  | ||| |||||||||| ||||| ||||||    
T  32015259 tatagcaaaacccactaactattggtgcaagaaatactaacacacaaaacctttatttatgttgccaagtctttgcatatatcttcctattat 32015167  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 354
Target Start/End: Original strand, 29235155 - 29235265
Alignment:
Q  244 tatagcaaaacccactaactattggtgcaagtaat-accgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatg 342  Q
    |||||||||||| || ||||||||||||||| ||| ||  ||||||||| | |||||| ||||| | ||| |||||||||||| ||||||| |||| |||    
T  29235155 tatagcaaaacc-acgaactattggtgcaagaaattactaacacacaaggcctttatttatatggccaagtctttgcatattttttcatataatccgatg 29235253  T
Q  343 tgggacattttc 354  Q
    ||||| ||||||    
T  29235254 tgggatattttc 29235265  T

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Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 225 - 354
Target Start/End: Original strand, 8761186 - 8761316
Alignment:
Q  225 tagtagaggtaacgttagttatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatga-ctaagcctttgcatat 323  Q
    |||||||| ||| | ||| |||| ||||| |||||||| ||||||||||| |||||  |||||||||||||||||| |||||| | |||  |||||||||    
T  8761186 tagtagagataatgctagctataacaaaatccactaacaattggtgcaagaaatactaacacacaagacttttatttatatgaccaaagtatttgcatat 8761285  T
Q  324 ttcttcatattatccaatgtgggacattttc 354  Q
    ||||||||||||||  |||||||||||||||    
T  8761286 ttcttcatattatctgatgtgggacattttc 8761316  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 37965516 - 37965624
Alignment:
Q  247 agcaaaacccactaactattggtgcaagtaataccgacacacaa-gacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgg 345  Q
    ||||||||||| |||||||||||||||| |||||  |||||||| |||||||||| ||||  | ||| ||||||||||||||||||||||||| |||||     
T  37965516 agcaaaacccattaactattggtgcaagaaatactaacacacaaagacttttatttatatatccaagtctttgcatatttcttcatattatccgatgtga 37965615  T
Q  346 gacattttc 354  Q
    |||||||||    
T  37965616 gacattttc 37965624  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 257 - 345
Target Start/End: Complemental strand, 10128584 - 10128496
Alignment:
Q  257 actaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgg 345  Q
    |||||||||||||||||| |||||  |||||||||||||||||| ||||||| ||| |||| |||||||||||||||| ||| ||||||    
T  10128584 actaactattggtgcaagaaatactaacacacaagacttttatttatatgaccaagtctttccatatttcttcatattctccgatgtgg 10128496  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 350
Target Start/End: Complemental strand, 15140859 - 15140798
Alignment:
Q  289 aagacttttattaatatgactaagcctttgcatatttcttcatattatccaatgtgggacat 350  Q
    |||||||||||| ||||||| ||  |||| ||||||||||||| ||| || |||||||||||    
T  15140859 aagacttttatttatatgaccaaatctttacatatttcttcattttaaccgatgtgggacat 15140798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 328
Target Start/End: Complemental strand, 25550174 - 25550091
Alignment:
Q  244 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttctt 328  Q
    ||||| |||| |||||||||||| || |||| |||||  |||||||||||||||||| ||||| | ||  |||| ||||||||||    
T  25550174 tataggaaaatccactaactattagtccaagaaatact-acacacaagacttttatttatatggccaaatctttacatatttctt 25550091  T

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Target: scaffold0007 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 260213 - 260286
Alignment:
Q  259 taactattggtgcaagtaataccgacacacaagacttttattaatatgactaagcctttgcatatttcttcata 332  Q
    |||||||||||||||| |||||  |||||||||  ||||||| || |||||||| |||||||||||||||||||    
T  260213 taactattggtgcaagaaatactaacacacaaggattttatttatttgactaagtctttgcatatttcttcata 260286  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 42001964 - 42001908
Alignment:
Q  244 tatagcaaaacccactaactattggtgcaagtaataccgacacacaagacttttatt 300  Q
    |||||||||||| |||||||||||||||||||| |||  ||||||||||||||||||    
T  42001964 tatagcaaaacctactaactattggtgcaagtattactaacacacaagacttttatt 42001908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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