View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19539_high_9 (Length: 485)
Name: NF19539_high_9
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19539_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 29121580 - 29122050
Alignment:
| Q |
1 |
attaaatataactacacgtgtttatcacgtcagacaccaaatatatctaaagcaatatggtcggtccaactaactatttttcttaatatcattttttcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29121580 |
attaaatataactacacgtgtttatcacgtcagacaccaaatatatctaaagcaatatggtctttccaactaactatttttcttaatatcattttttcaa |
29121679 |
T |
|
| Q |
101 |
atttaaataaatttagacgacaaaatatgacaaaaaatagtgatagacggacatgctagtgtccgtctttccagtagtccatataaggttagtaaaatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29121680 |
atttaaataaatttagacgacaaaatatgacaaaaaatagtgatagacggacatactagtgtccgtctttccagttgtccatataaggttagtaaaatgt |
29121779 |
T |
|
| Q |
201 |
aaattaatttatagcnnnnnnnnnn--tgcaaattggttgacaaaatattaacctgtgtaaaacttaataagaagccaagattgccttccaatatttgat |
298 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29121780 |
aaattaatttataggaaaaaaagaaaatgcaaattggttgacaaaatattaacctgtgtaaaacttaataagaaaccaagattgccttccaatatttgat |
29121879 |
T |
|
| Q |
299 |
tcctatcattctggtcctttataacttgctccatttcttccatcaaatcatgaacttttatgatccttctacctttctcaaggtacttggcaaaacacct |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29121880 |
tcctatcattctggtcctttataacttgctccatttcttccatcaaatcatgaacttttatgatccttctacctttctcaaggtacttggcaaaacacct |
29121979 |
T |
|
| Q |
399 |
cttcatatggtatcgactctgcttcgatgcatctggtgatgacatattgttatctgttattgaatctgtgc |
469 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29121980 |
cttcatatggtatctactctgcttcgatgcatctggtgatgacatattgttatctgttattgaatctgtgc |
29122050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 250 - 433
Target Start/End: Original strand, 6732356 - 6732541
Alignment:
| Q |
250 |
acctgtgtaaaacttaataa--gaagccaagattgccttccaatatttgattcctatcattctggtcctttataacttgctccatttcttccatcaaatc |
347 |
Q |
| |
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|||| ||||||||||||||| |||||||| |||||||||||||||||||||| | | | ||| ||| |||| |||||||||||||||||||||||| || |
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| T |
6732356 |
acctatgtaaaacttaataaaagaagccaaaattgccttccaatatttgattcttgtgactcttgtcatttacaacttgctccatttcttccatcaagtc |
6732455 |
T |
|
| Q |
348 |
atgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggtatcgactctgcttcgatgcatctg |
433 |
Q |
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||||| ||||| ||||| ||||||||||||||||||| |||| ||||| ||||| || |||| ||||| |||||| |||||| |
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| T |
6732456 |
atgaaagtttatattcctttcacctttctcaaggtacttgtcaaagcacctattcatttgatatctgctctgtttcgatacatctg |
6732541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 409
Target Start/End: Complemental strand, 6528844 - 6528766
Alignment:
| Q |
331 |
atttcttccatcaaatcatgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggt |
409 |
Q |
| |
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|||||||||||||| ||||||| ||||||| | ||||||||| ||| |||| |||| ||||| ||| ||||| |||||| |
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| T |
6528844 |
atttcttccatcaagtcatgaagttttatggttcttctacctctctaaaggaactttgcaaagcacttcttcgtatggt |
6528766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 431
Target Start/End: Complemental strand, 32773610 - 32773507
Alignment:
| Q |
328 |
tccatttcttccatcaaatcatgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggtatcgactctgcttcgatg |
427 |
Q |
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|||| ||||||||| || ||||||| ||| ||||| ||||| ||||| || |||||||| ||||| ||| ||||||||||||||| ||||| | || ||| |
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| T |
32773610 |
tccacttcttccattaattcatgaagtttcatgattcttctccctttttctaggtacttagcaaagcacttcttcatatggtatctactcttcctcaatg |
32773511 |
T |
|
| Q |
428 |
catc |
431 |
Q |
| |
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|||| |
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|
| T |
32773510 |
catc |
32773507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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