View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19539_low_1 (Length: 818)
Name: NF19539_low_1
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19539_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 714; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 19 - 780
Target Start/End: Original strand, 50921670 - 50922432
Alignment:
| Q |
19 |
aaagcgtcatcttttcctatccaatgcaatcacaaaaattgatgggagaatctaagacgttatttgataaccacaaaccttcttcttcatcatcataacc |
118 |
Q |
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| T |
50921670 |
aaagcgtcatcttttcctatccaatgcaatcacaaaaattgatgggagaatctaagacgttatttgataaccacaaaccttcttcttcatcatcataacc |
50921769 |
T |
|
| Q |
119 |
agatcagcattgcccccctttacaagctcagagaatacttttcgaaaatggctagcaacacctttgaaagtttgttctattgattcatctttccgttgat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
50921770 |
agatcagcattgcccccctttacaagctcagagaatactcttcgaaaatggctagcaacacctttgaaagttcgttctactgattcatctttccgttgat |
50921869 |
T |
|
| Q |
219 |
caagcagtgatattagctcttttataacctgcaattatttaatagnnnnnnngtagaacaattcagcaatgtttcatacaatacaatcacaaattcaaaa |
318 |
Q |
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| T |
50921870 |
caagcagtgatattagctcttttataacctgcaattatttaatagaaaaaaagtagaacaatttagcaatgtttcatacaatacaatcacaaattcaaaa |
50921969 |
T |
|
| Q |
319 |
gttggcattgagtcagtcctacactcaaacccaatcttaaaaccaaaaatcacattaatactacattacaggacatgtaacatcagaaaatgtaaactcg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
50921970 |
gttggcattgagtcagtcctacactcaaacccaatcttaaaaccaaaaatcacattaatactacattacaggacatgtaacatcagaaaatataaactcg |
50922069 |
T |
|
| Q |
419 |
ataagaaaaataacacaaaaatatgttattccagatgcaggtaagtgttcgaaaataccgacttcatggacacaaagatgcaacaactttcaccgccaaa |
518 |
Q |
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| T |
50922070 |
ataagaaaaataacacaaaaatatgttattccagatgcaggtaagtgttcgaaaataccgacttcatggacacaaagatgcaacaactttcaccgccaaa |
50922169 |
T |
|
| Q |
519 |
atcaattgtttgaaaagcaatattaaagtacagaaccagcaatacaggtcatgcaaatttggccaccaaagacttctgtatcttcgttaacaattataaa |
618 |
Q |
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| T |
50922170 |
atcaattgtttgaaaagcaatattaaagtacagaaccagcaatacaggtcatgcaaatttggccaccaaagacttctgtatcttcgttaacaattataaa |
50922269 |
T |
|
| Q |
619 |
gaacttccttaactgaaata-cagtataccttctctccaacaacaagttcagcttgtcttttctgaagttcttctcgctgttctgtaaaatttatgtact |
717 |
Q |
| |
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| T |
50922270 |
gaacttccttaactgaaatagcagtataccttctctccaacaacaagttcagcttgtcttttctgaagttcttctcgctgttctgtaaaatttatgtact |
50922369 |
T |
|
| Q |
718 |
gatcgagtgctttcttgttgacatgactaaactgttgcaagttatccttgcacttgtgtagcc |
780 |
Q |
| |
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| T |
50922370 |
gatcgagtgctttcttgttgacatgactaaactgttgcaagttatccttgcacttgtgtagcc |
50922432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 35 - 775
Target Start/End: Complemental strand, 20743320 - 20742571
Alignment:
| Q |
35 |
ctatccaatgcaatcacaaaaattgatgggagaatctaagacgttatttgataaccacaaaccttcttcttcatcatcataaccagatcagcattgcccc |
134 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||| ||| || || | ||||||||||||||||||||| |||||||| | ||| ||||| |
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| T |
20743320 |
ctatccaatgcaatcacaaaaattgatgggagaagctaagacattaattactagcaacaaaccttcttcttcatcat---aaccagatgaccatggcccc |
20743224 |
T |
|
| Q |
135 |
cctttacaagctcagagaatacttttcgaaaatggctagcaacacctttgaaagtttgttctattgattcatctttccgttgatcaagcagtgatattag |
234 |
Q |
| |
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||| |||||| ||||||||||||| ||| ||||| |||||||||||||||||||| | |||||||||||||| ||||||||||| || ||||||||| |
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| T |
20743223 |
cctgtacaagttcagagaatacttctcggaaatgcctagcaacacctttgaaagtgcgctctattgattcatccttccgttgatctagacttgatattag |
20743124 |
T |
|
| Q |
235 |
ctcttttataacctgcaattatttaatagnnnnnnngt-agaacaattcagcaatgtttcatacaatacaatcacaaattcaaaagttggcattgagtca |
333 |
Q |
| |
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|||| | || |||||||||||||| | || | || || | ||||||||| ||||||||||||||||||| |||||||||| ||||| ||| |
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| T |
20743123 |
ctctctgattttctgcaattatttaacggcaaaaaagtcaaaaaaaattagcaatgttgtatacaatacaatcacaaatgcaaaagttggaattgaatca |
20743024 |
T |
|
| Q |
334 |
gtcctacactcaaacccaatcttaaaaccaaaaatcacattaatactacattacaggacatgtaacatcagaaaatgtaaactcgataagaaaaataaca |
433 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| |||||| |||||| |||||| || | || |||| || |
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| T |
20743023 |
gtcctacactcaaacccaaacttaaaaccaaaaatcacattaaaactacattacagggcatgatacatcaaaaaatggaaactcaatcaaaagaatatca |
20742924 |
T |
|
| Q |
434 |
caaaaatatgttattccagatgcaggtaagtgttcgaaaataccgacttcatggacacaaaga-tgcaacaactttcaccgcca----aaatcaattgtt |
528 |
Q |
| |
|
|||| ||| || |||||| |||||||| | | ||| | || || |||||||| |||||| | | ||||||| | ||||| |||| |||||| ||||| |
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|
| T |
20742923 |
caaatataggtcattccacatgcaggtgaatattcaacaagac-gacttcatagacacataaactgcaacagcattcacagccatgaaaaatcatttgtt |
20742825 |
T |
|
| Q |
529 |
tgaaaagcaatat----taaagtacagaaccagcaatacaggtcatgcaaatttggccaccaaagacttct--gtatcttcgttaacaattataaagaac |
622 |
Q |
| |
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||||| | || |||||| ||||||||||||||| |||| ||||| ||||||| ||||||| | ||||||| | ||||||||| |||||| |
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| T |
20742824 |
cgaaaacctttagatgataaagtgcagaaccagcaatacttgtcaggcaaaattggccattgaagacttttttgtatctttggaaacaattatgaagaac |
20742725 |
T |
|
| Q |
623 |
ttccttaactgaaat-acagtataccttctctccaacaacaagttcagcttgtcttttctgaagttcttctcgctgttctgtaaaatttatgtactgatc |
721 |
Q |
| |
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||||| |||| ||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
20742724 |
ttcctatactggaatgacagtatacctcatctcctgcatcaagttcagcttgtcttttctgaagttcttctctttgttctgtaaaatttatgtactgatc |
20742625 |
T |
|
| Q |
722 |
gagtgctttcttgttgacatgactaaactgttgcaagttatccttgcacttgtg |
775 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | ||| |||||| |||| |
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| T |
20742624 |
gagtgctttcttgttgacatgactaaactgttgcaattcatcattgcacctgtg |
20742571 |
T |
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