View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19539_low_11 (Length: 459)

Name: NF19539_low_11
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19539_low_11
NF19539_low_11
[»] chr4 (16 HSPs)
chr4 (76-440)||(48341081-48341454)
chr4 (237-425)||(45637328-45637516)
chr4 (89-144)||(8815547-8815602)
chr4 (109-144)||(45637624-45637659)
chr4 (89-143)||(13608802-13608856)
chr4 (359-407)||(52577900-52577948)
chr4 (100-143)||(22495220-22495263)
chr4 (103-145)||(11131048-11131090)
chr4 (109-143)||(18922108-18922142)
chr4 (89-131)||(22294760-22294802)
chr4 (101-143)||(26961308-26961350)
chr4 (89-143)||(32293485-32293539)
chr4 (102-143)||(13137277-13137318)
chr4 (362-407)||(13157347-13157392)
chr4 (237-298)||(13608961-13609022)
chr4 (102-143)||(42527215-42527256)
[»] chr5 (12 HSPs)
chr5 (89-440)||(34177585-34177955)
chr5 (100-151)||(42289295-42289346)
chr5 (89-160)||(8006953-8007024)
chr5 (89-143)||(16518228-16518282)
chr5 (237-399)||(8487974-8488136)
chr5 (106-143)||(12564778-12564815)
chr5 (109-143)||(16143533-16143567)
chr5 (237-298)||(16518400-16518461)
chr5 (109-142)||(7465410-7465443)
chr5 (106-143)||(18908436-18908473)
chr5 (362-390)||(14920917-14920945)
chr5 (345-405)||(17971977-17972037)
[»] chr1 (10 HSPs)
chr1 (239-431)||(23452010-23452200)
chr1 (237-425)||(2653736-2653924)
chr1 (237-407)||(42476231-42476401)
chr1 (237-429)||(16909049-16909241)
chr1 (89-143)||(17128687-17128741)
chr1 (109-144)||(2653593-2653628)
chr1 (100-144)||(52251538-52251582)
chr1 (109-143)||(50039840-50039874)
chr1 (236-305)||(3938204-3938273)
chr1 (109-141)||(42786014-42786046)
[»] chr6 (9 HSPs)
chr6 (221-342)||(1767050-1767171)
chr6 (89-143)||(2189523-2189577)
chr6 (237-342)||(18673345-18673450)
chr6 (89-143)||(1767253-1767307)
chr6 (109-143)||(15117121-15117155)
chr6 (359-387)||(3076676-3076704)
chr6 (359-407)||(11324383-11324431)
chr6 (103-135)||(29321186-29321218)
chr6 (359-387)||(34018143-34018171)
[»] chr2 (4 HSPs)
chr2 (237-399)||(36178788-36178950)
chr2 (100-143)||(5690868-5690911)
chr2 (109-143)||(1997566-1997600)
chr2 (359-407)||(45131261-45131309)
[»] chr3 (5 HSPs)
chr3 (89-143)||(3694576-3694630)
chr3 (359-390)||(20017557-20017588)
chr3 (218-301)||(27302369-27302452)
chr3 (345-407)||(14788783-14788845)
chr3 (103-145)||(52733969-52734011)
[»] chr7 (10 HSPs)
chr7 (221-294)||(43026321-43026394)
chr7 (89-143)||(43026176-43026230)
chr7 (100-143)||(35516889-35516932)
chr7 (89-143)||(9628390-9628444)
chr7 (109-143)||(24904953-24904987)
chr7 (103-145)||(47096403-47096445)
chr7 (237-298)||(9628224-9628285)
chr7 (359-404)||(16560010-16560055)
chr7 (359-404)||(16605607-16605652)
chr7 (104-144)||(27855078-27855118)
[»] chr8 (5 HSPs)
chr8 (237-411)||(43776130-43776304)
chr8 (89-143)||(43776415-43776469)
chr8 (237-407)||(38738340-38738511)
chr8 (362-390)||(447786-447814)
chr8 (89-141)||(38738624-38738676)
[»] scaffold0777 (1 HSPs)
scaffold0777 (104-139)||(1082-1117)


Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 76 - 440
Target Start/End: Original strand, 48341081 - 48341454
Alignment:
Q  76 aagagactaaaattattaccatagcaaaaaggtcttcctagcacaaggtgtgctaaggaagaaacaccttaatacagtcagagtcagaaacaaaaaacaa 175  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48341081 aagagactaaaattattaccatagcaaaaagaccttcctagcacaaggtgtgctaaggaagaaacactttaatacagtcagagtcagaaacaaaaaacaa 48341180  T
Q  176 ataactacaatgctgaaagcgaaccaccagaggaaaagca--------ccagaatagtaaatagactctgccaccaaccatggtaattgagaggaagatt 267  Q
    ||||||| ||||||||||||||||||||| |||||||  |        |  |||||||||| |||||||||||||||||||| |||||||||||||||||    
T  48341181 ataactataatgctgaaagcgaaccaccaaaggaaaacaaaggaaaaacacgaatagtaaacagactctgccaccaaccatgataattgagaggaagatt 48341280  T
Q  268 gaatagtttcccctttaaccacatgaaagttagagccttgattctctctaccacctgcttaatagaacaa-ttttttgcattggaaatttaattatttct 366  Q
    ||||||||||||||||| |||||||||||||| |||||||||| | |||||||||||| ||||| ||||| |||||||||||| ||||| |||||||| |    
T  48341281 gaatagtttcccctttagccacatgaaagttaaagccttgattatgtctaccacctgcataataaaacaatttttttgcattgaaaattcaattatttat 48341380  T
Q  367 ttccttccatatttcccacaccgttgtaaaccatatgacctataacagagatcgccttgactttgctacaccac 440  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48341381 ttccttccatatttcccacaccgttgcaaaccatatgacctataacagagatcgccttgactttgctacaccac 48341454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 237 - 425
Target Start/End: Complemental strand, 45637516 - 45637328
Alignment:
Q  237 gccaccaaccatggtaattgagaggaagattgaatagtttcccctttaaccacatgaaagttagagccttgattctctctaccacctgcttaatagaaca 336  Q
    ||||||||||||| |||||||| |||| | |||   |||||||||| |||||| ||||||| || | ||| ||| | || |||||||||  |||||||||    
T  45637516 gccaccaaccatgttaattgaggggaatactgacatgtttccccttcaaccacgtgaaagtaagtgacttaattttatccaccacctgcggaatagaaca 45637417  T
Q  337 attttttgcattggaaatttaattatttctttccttccatatttcccacaccgttgtaaaccatatgacctataacagagatcgccttg 425  Q
    ||||||  | ||| ||||   ||| |||||||| ||||| |||||||||||||||| |||||| ||||||| ||| |  ||||||||||    
T  45637416 atttttgtcgttgaaaatcctattgtttctttctttccaaatttcccacaccgttgcaaaccaaatgacctgtaaaatggatcgccttg 45637328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 8815602 - 8815547
Alignment:
Q  89 tattaccatagcaaaaaggtcttcctagcacaaggtgtgctaaggaagaaacacct 144  Q
    |||||||||| |||| ||| ||||||||||||||| ||||||||||||||||||||    
T  8815602 tattaccataacaaataggccttcctagcacaaggagtgctaaggaagaaacacct 8815547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 144
Target Start/End: Complemental strand, 45637659 - 45637624
Alignment:
Q  109 cttcctagcacaaggtgtgctaaggaagaaacacct 144  Q
    ||||||||||||||||||||||||||||||||||||    
T  45637659 cttcctagcacaaggtgtgctaaggaagaaacacct 45637624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 13608802 - 13608856
Alignment:
Q  89 tattaccatagcaaaaaggtcttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    ||||||||||  ||||||| |||||||||||||| |||||||| |||||||||||    
T  13608802 tattaccataataaaaaggccttcctagcacaagttgtgctaaagaagaaacacc 13608856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 407
Target Start/End: Complemental strand, 52577948 - 52577900
Alignment:
Q  359 ttatttctttccttccatatttcccacaccgttgtaaaccatatgacct 407  Q
    ||||||||||||||||| |||||||||||||| | |||||| |||||||    
T  52577948 ttatttctttccttccagatttcccacaccgtagcaaaccaaatgacct 52577900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 22495220 - 22495263
Alignment:
Q  100 caaaaaggtcttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    ||||| ||||||||||||||||| |||||||| |||||||||||    
T  22495220 caaaatggtcttcctagcacaagttgtgctaaagaagaaacacc 22495263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 11131048 - 11131090
Alignment:
Q  103 aaaggtcttcctagcacaaggtgtgctaaggaagaaacacctt 145  Q
    |||||||||||||||||||||||||| |||||| ||| |||||    
T  11131048 aaaggtcttcctagcacaaggtgtgcaaaggaataaaaacctt 11131090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 18922142 - 18922108
Alignment:
Q  109 cttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    ||||||||||| |||||||||||||||||||||||    
T  18922142 cttcctagcactaggtgtgctaaggaagaaacacc 18922108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 22294802 - 22294760
Alignment:
Q  89 tattaccatagcaaaaaggtcttcctagcacaaggtgtgctaa 131  Q
    |||||||| | |||||||| |||||||||||||||||||||||    
T  22294802 tattaccacatcaaaaagggcttcctagcacaaggtgtgctaa 22294760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 26961350 - 26961308
Alignment:
Q  101 aaaaaggtcttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    |||| ||||||||||||||||| |||||||| |||||||||||    
T  26961350 aaaatggtcttcctagcacaagttgtgctaaagaagaaacacc 26961308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 32293485 - 32293539
Alignment:
Q  89 tattaccatagcaaaaaggtcttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    |||||||||| |||||| ||||||||| ||||||||||| || | ||||||||||    
T  32293485 tattaccatatcaaaaaagtcttcctaacacaaggtgtgttacgaaagaaacacc 32293539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 13137318 - 13137277
Alignment:
Q  102 aaaaggtcttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    ||||||||||||||||||||| |||||  |||||||||||||    
T  13137318 aaaaggtcttcctagcacaagatgtgccgaggaagaaacacc 13137277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 13157392 - 13157347
Alignment:
Q  362 tttctttccttccatatttcccacaccgttgtaaaccatatgacct 407  Q
    |||||||| ||||||||||||||||| |||| |||||| |||||||    
T  13157392 tttctttctttccatatttcccacactgttgcaaaccaaatgacct 13157347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 13608961 - 13609022
Alignment:
Q  237 gccaccaaccatggtaattgagaggaagattgaatagtttcccctttaaccacatgaaagtt 298  Q
    |||||||||||||||||||||  ||||||||||    |||||| || |||||||||||||||    
T  13608961 gccaccaaccatggtaattgaagggaagattgacgtatttccctttcaaccacatgaaagtt 13609022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 42527215 - 42527256
Alignment:
Q  102 aaaaggtcttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    |||||| |||||||||||||||||||  ||||||||||||||    
T  42527215 aaaaggccttcctagcacaaggtgtgtcaaggaagaaacacc 42527256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 89 - 440
Target Start/End: Complemental strand, 34177955 - 34177585
Alignment:
Q  89 tattaccatagcaaaaaggtcttcctagcacaaggtgtgctaaggaagaaacaccttaatacagtcagagtcagaaacaaaaaacaaataactacaatgc 188  Q
    |||||||| | | |||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  34177955 tattaccacaacgaaaaggccttcctagcacaaggtgtgctaaggaagaagcactttaatacagtcagagtcggaaacaaaaaacaaataactacaatgc 34177856  T
Q  189 tgaaagcgaaccaccagaggaaa----------agca------------ccagaatagtaaatagactctgccaccaaccatggtaattgagaggaagat 266  Q
    |||||| ||||||||| ||||||          ||||            |||| ||||||||  |||||||||||||||||| |||||||||||||||||    
T  34177855 tgaaagtgaaccaccaaaggaaaacaaaggaaaagcattcagcctatatccaggatagtaaacggactctgccaccaaccatcgtaattgagaggaagat 34177756  T
Q  267 tgaatagtttcccctttaaccacatgaaagttagagccttgattctctctaccacctgcttaatagaacaattttttgcattggaaatttaattatttct 366  Q
    ||| |||||||||||||||||||||| |||||| |||||||||| | || |||||| ||| |||||| ||||||||  ||||| |||||  |||||||||    
T  34177755 tgactagtttcccctttaaccacatgtaagttaaagccttgattttgtccaccaccagctgaatagagcaatttttgacattgaaaattcgattatttct 34177656  T
Q  367 ttccttccatatttcccacaccgttgtaaaccatatgacctataacagagatcgccttgactttgctacaccac 440  Q
    ||||||||||||||| |||||||||| |||||||||||||   |||| ||||||||||||||||||||||||||    
T  34177655 ttccttccatatttcacacaccgttgcaaaccatatgacc---aacatagatcgccttgactttgctacaccac 34177585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 42289346 - 42289295
Alignment:
Q  100 caaaaaggtcttcctagcacaaggtgtgctaaggaagaaacaccttaataca 151  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42289346 caaaaaggtcttcctagcacaaggtgtgctaaggaagaaacaccataataca 42289295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 8007024 - 8006953
Alignment:
Q  89 tattaccatagcaaaaaggtcttcctagcacaaggtgtgctaaggaagaaacaccttaatacagtcagagtc 160  Q
    |||||||||| ||||||||||||| || |||||||||||||||||||||||||||  ||||||  |||||||    
T  8007024 tattaccatatcaaaaaggtcttcgtaacacaaggtgtgctaaggaagaaacaccaaaatacaaacagagtc 8006953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 16518228 - 16518282
Alignment:
Q  89 tattaccatagcaaaaaggtcttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    |||||||||  ||||||||||||||  ||||||||||||||||||||||||||||    
T  16518228 tattaccatttcaaaaaggtcttccctgcacaaggtgtgctaaggaagaaacacc 16518282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 399
Target Start/End: Complemental strand, 8488136 - 8487974
Alignment:
Q  237 gccaccaaccatggtaattgagaggaagattgaatagtttcccctttaaccacatgaaagttagagccttgattctctctaccacctgcttaatagaaca 336  Q
    ||||||||||||| |||||||| ||||||  ||   ||||| |||| |||||| || |||||||   ||||||| | || |||||||||  |||||| ||    
T  8488136 gccaccaaccatgataattgaggggaagacagacgtgtttctccttcaaccacctgtaagttagtaacttgattttgtccaccacctgcaaaatagagca 8488037  T
Q  337 attttttgcattggaaatttaattatttctttccttccatatttcccacaccgttgtaaacca 399  Q
    | ||||    ||| ||||   |||||||||||| ||||||||||||||||| |||| ||||||    
T  8488036 aattttgttgttgaaaatccgattatttctttctttccatatttcccacactgttgcaaacca 8487974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 12564778 - 12564815
Alignment:
Q  106 ggtcttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    |||||||||||||| |||||||||||||||||||||||    
T  12564778 ggtcttcctagcactaggtgtgctaaggaagaaacacc 12564815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 16143533 - 16143567
Alignment:
Q  109 cttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    ||||||||||| |||||||||||||||||||||||    
T  16143533 cttcctagcactaggtgtgctaaggaagaaacacc 16143567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 16518400 - 16518461
Alignment:
Q  237 gccaccaaccatggtaattgagaggaagattga-atagtttcccctttaaccacatgaaagtt 298  Q
    ||||| |||||||||||||||| |||||||||| ||| ||||||||| |||||||| ||||||    
T  16518400 gccactaaccatggtaattgaggggaagattgatata-tttccccttcaaccacataaaagtt 16518461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 7465443 - 7465410
Alignment:
Q  109 cttcctagcacaaggtgtgctaaggaagaaacac 142  Q
    ||||||||||| ||||||||||||||||||||||    
T  7465443 cttcctagcactaggtgtgctaaggaagaaacac 7465410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 18908436 - 18908473
Alignment:
Q  106 ggtcttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    |||||||||||||  |||||||||||||||||||||||    
T  18908436 ggtcttcctagcattaggtgtgctaaggaagaaacacc 18908473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 390
Target Start/End: Original strand, 14920917 - 14920945
Alignment:
Q  362 tttctttccttccatatttcccacaccgt 390  Q
    |||||||||||||||||||||||||||||    
T  14920917 tttctttccttccatatttcccacaccgt 14920945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 17971977 - 17972037
Alignment:
Q  345 cattggaaatttaattatttctttccttccatatttcccacaccgttgtaaaccatatgac 405  Q
    |||||||||||   ||||||||||| ||||||||||||||||| || | |||||| |||||    
T  17971977 cattggaaattatgttatttctttctttccatatttcccacacagtagcaaaccaaatgac 17972037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 239 - 431
Target Start/End: Complemental strand, 23452200 - 23452010
Alignment:
Q  239 caccaaccatggtaattgagaggaagattgaatagtttcccctttaaccacatgaaagttagagccttgattctctctaccacctgcttaatagaacaat 338  Q
    ||||| ||||||||||||||||||||| |||  ||||| ||||| ||||||||||| ||||| |  || ||| | ||||||||||||  |||||||||||    
T  23452200 caccatccatggtaattgagaggaagactgatgagttttcccttcaaccacatgaatgttagcgatttaattttgtctaccacctgcaaaatagaacaat 23452101  T
Q  339 tttttgcattggaaatttaattatttctttccttccatatttcccacaccgttgtaaaccatatgacctataacagagatcgccttgactttg 431  Q
    || || ||||| |||||   ||||||||||| ||||  ||||||||||| || | |||||| |||||||  | ||  ||||||||||||||||    
T  23452100 ttcttacattgaaaattcggttatttctttctttcc--atttcccacactgtagcaaaccaaatgacctgaagcatggatcgccttgactttg 23452010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 237 - 425
Target Start/End: Original strand, 2653736 - 2653924
Alignment:
Q  237 gccaccaaccatggtaattgagaggaagattgaatagtttcccctttaaccacatgaaagttagagccttgattctctctaccacctgcttaatagaaca 336  Q
    ||||||||||||| |||||||| |||| | |||   |||||||||| |||||| ||||||| || | ||| ||| | || |||||||||  |||||||||    
T  2653736 gccaccaaccatgttaattgaggggaatactgacatgtttccccttcaaccacgtgaaagtaagtgacttaattttatccaccacctgcggaatagaaca 2653835  T
Q  337 attttttgcattggaaatttaattatttctttccttccatatttcccacaccgttgtaaaccatatgacctataacagagatcgccttg 425  Q
    ||||||  | ||| ||||   ||| |||||||| ||||| |||||||||||||||| |||||| ||||||| ||| |  ||||||||||    
T  2653836 atttttgtcgttgaaaatcctattgtttctttctttccaaatttcccacaccgttgcaaaccaaatgacctgtaaaatggatcgccttg 2653924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 407
Target Start/End: Complemental strand, 42476401 - 42476231
Alignment:
Q  237 gccaccaaccatggtaattgagaggaagattgaatagtttcccctttaaccacatgaaagttagagccttgattctctctaccacctgcttaatagaaca 336  Q
    ||||||||||||| |||||||| |||||| |||   |||||||||| |||||| || ||||||| | ||||||| | || |||||||||  |||||| ||    
T  42476401 gccaccaaccatgataattgaggggaagactgacgtgtttccccttcaaccacctgtaagttagtgacttgattttgtccaccacctgcgaaatagagca 42476302  T
Q  337 attttttgcattggaaatttaattatttctttccttccatatttcccacaccgttgtaaaccatatgacct 407  Q
    | ||||    ||  ||||   |||||||||||| ||||||||||||||||| |||| |||||| |||||||    
T  42476301 aattttgttgttcaaaatccgattatttctttctttccatatttcccacactgttgcaaaccaaatgacct 42476231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 429
Target Start/End: Original strand, 16909049 - 16909241
Alignment:
Q  237 gccaccaaccatggtaattgagaggaagattgaatagtttcccctttaaccacatgaaagttagagccttgattctctctaccacctgcttaatagaaca 336  Q
    ||||||||||||| |||||||| |  ||| |||  | ||||||||| |||||||| |||||||||| ||| | | | || |||||||||| |||||| ||    
T  16909049 gccaccaaccatgataattgagggagagactgacgaatttccccttcaaccacatcaaagttagagacttaactttgtccaccacctgctgaatagagca 16909148  T
Q  337 attttttgcattggaaatttaattatttctttccttccatatttcccacaccgttgtaaaccatatgacctataacagagatcgccttgactt 429  Q
    || |||  ||||| ||||  |||| |||||||| ||||| |||| |||||| |||   ||||| || |||| ||| |  ||||||||||||||    
T  16909149 atgtttgtcattgaaaatccaattgtttctttctttccaaattttccacactgttcctaaccaaataacctgtaagatggatcgccttgactt 16909241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 17128741 - 17128687
Alignment:
Q  89 tattaccatagcaaaaaggtcttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    |||||||| | ||||| ||||||||||||||||| ||||||||||||||||||||    
T  17128741 tattaccacatcaaaagggtcttcctagcacaagatgtgctaaggaagaaacacc 17128687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 144
Target Start/End: Original strand, 2653593 - 2653628
Alignment:
Q  109 cttcctagcacaaggtgtgctaaggaagaaacacct 144  Q
    ||||||||||||||||||||||||||||||||||||    
T  2653593 cttcctagcacaaggtgtgctaaggaagaaacacct 2653628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 52251582 - 52251538
Alignment:
Q  100 caaaaaggtcttcctagcacaaggtgtgctaaggaagaaacacct 144  Q
    ||||| || ||||||||||||||| ||||||||||||||||||||    
T  52251582 caaaacggccttcctagcacaaggagtgctaaggaagaaacacct 52251538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 50039874 - 50039840
Alignment:
Q  109 cttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    ||||||||||| |||||||||||||||||||||||    
T  50039874 cttcctagcactaggtgtgctaaggaagaaacacc 50039840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 305
Target Start/End: Complemental strand, 3938273 - 3938204
Alignment:
Q  236 tgccaccaaccatggtaattgagaggaagattgaatagtttcccctttaaccacatgaaagttagagcct 305  Q
    ||||||||||||||||| || || | |||| |||  ||||||||||| ||||||||||| ||||| ||||    
T  3938273 tgccaccaaccatggtagttaagcgaaagactgacaagtttccccttcaaccacatgaatgttagcgcct 3938204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 42786046 - 42786014
Alignment:
Q  109 cttcctagcacaaggtgtgctaaggaagaaaca 141  Q
    ||||||||||| |||||||||||||||||||||    
T  42786046 cttcctagcactaggtgtgctaaggaagaaaca 42786014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 221 - 342
Target Start/End: Complemental strand, 1767171 - 1767050
Alignment:
Q  221 atagtaaatagactctgccaccaaccatggtaattgagaggaagattgaatagtttcccctttaaccacatgaaagttagagccttgattctctctacca 320  Q
    ||||||||  |||| |||||||||||||||||||||||||||||| |||  | ||||||||| ||||||||||||||||| ||||| ||| | ||||| |    
T  1767171 atagtaaacggactttgccaccaaccatggtaattgagaggaagactgacaaatttccccttcaaccacatgaaagttagcgccttaattttgtctacta 1767072  T
Q  321 cctgcttaatagaacaattttt 342  Q
    ||||   |||||| ||||||||    
T  1767071 cctgtggaatagagcaattttt 1767050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 2189523 - 2189577
Alignment:
Q  89 tattaccatagcaaaaaggtcttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    |||||||| | ||| ||||||||||||||||||||||||||||||||||||||||    
T  2189523 tattaccacatcaacaaggtcttcctagcacaaggtgtgctaaggaagaaacacc 2189577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 342
Target Start/End: Complemental strand, 18673450 - 18673345
Alignment:
Q  237 gccaccaaccatggtaattgagaggaagattga-atagtttcccctttaaccacatgaaagttagagccttgattctctctaccacctgcttaatagaac 335  Q
    ||||||||||||| |||||||| |||||| ||| ||| |||| |||| |||||||| ||||| |||| ||| ||| | || |||||||||  ||||||||    
T  18673450 gccaccaaccatgataattgaggggaagactgacata-tttctccttcaaccacataaaagtaagagacttaattttatccaccacctgcggaatagaac 18673352  T
Q  336 aattttt 342  Q
    |||||||    
T  18673351 aattttt 18673345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 1767307 - 1767253
Alignment:
Q  89 tattaccatagcaaaaaggtcttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    |||||||| | |||| |||||||||||||| ||| |||||||| |||||||||||    
T  1767307 tattaccacaacaaagaggtcttcctagcataagatgtgctaaagaagaaacacc 1767253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 15117121 - 15117155
Alignment:
Q  109 cttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    ||||||||||| |||||||||||||||||||||||    
T  15117121 cttcctagcactaggtgtgctaaggaagaaacacc 15117155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 387
Target Start/End: Complemental strand, 3076704 - 3076676
Alignment:
Q  359 ttatttctttccttccatatttcccacac 387  Q
    |||||||||||||||||||||||||||||    
T  3076704 ttatttctttccttccatatttcccacac 3076676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 407
Target Start/End: Complemental strand, 11324431 - 11324383
Alignment:
Q  359 ttatttctttccttccatatttcccacaccgttgtaaaccatatgacct 407  Q
    ||||||||||||||||| |||| ||||||||| | |||||| |||||||    
T  11324431 ttatttctttccttccaaattttccacaccgtagcaaaccaaatgacct 11324383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 29321186 - 29321218
Alignment:
Q  103 aaaggtcttcctagcacaaggtgtgctaaggaa 135  Q
    |||||||||||||||||||||||||| ||||||    
T  29321186 aaaggtcttcctagcacaaggtgtgcaaaggaa 29321218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 387
Target Start/End: Original strand, 34018143 - 34018171
Alignment:
Q  359 ttatttctttccttccatatttcccacac 387  Q
    |||||||||||||||||||||||||||||    
T  34018143 ttatttctttccttccatatttcccacac 34018171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 399
Target Start/End: Complemental strand, 36178950 - 36178788
Alignment:
Q  237 gccaccaaccatggtaattgagaggaagattgaatagtttcccctttaaccacatgaaagttagagccttgattctctctaccacctgcttaatagaaca 336  Q
    |||||||||||||||||||||| |||||| |||   |||||||||| ||||||||||| ||||||| ||||||| | || ||||| |||   ||||| ||    
T  36178950 gccaccaaccatggtaattgaggggaagactgacatgtttccccttcaaccacatgaaggttagagacttgattttgtccaccacttgcagtatagagca 36178851  T
Q  337 attttttgcattggaaatttaattatttctttccttccatatttcccacaccgttgtaaacca 399  Q
    | ||||  ||||| ||||   ||| |||||||| ||| |||||||||| || |||| ||||||    
T  36178850 aattttgtcattgaaaatccgattgtttctttctttcgatatttcccaaactgttgcaaacca 36178788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 5690868 - 5690911
Alignment:
Q  100 caaaaaggtcttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    |||||||| |||||||||||||| ||||||||||||||||||||    
T  5690868 caaaaaggacttcctagcacaagatgtgctaaggaagaaacacc 5690911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 1997566 - 1997600
Alignment:
Q  109 cttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    ||||||||||| |||||||||||||||||||||||    
T  1997566 cttcctagcactaggtgtgctaaggaagaaacacc 1997600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 45131261 - 45131309
Alignment:
Q  359 ttatttctttccttccatatttcccacaccgttgtaaaccatatgacct 407  Q
    |||||||||||||||||||||| ||| || |||||||||  ||||||||    
T  45131261 ttatttctttccttccatattttccaaactgttgtaaacattatgacct 45131309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 3694576 - 3694630
Alignment:
Q  89 tattaccatagcaaaaaggtcttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    |||||||| | ||| ||||||||||||||||||||||||||||||||||||||||    
T  3694576 tattaccacatcaataaggtcttcctagcacaaggtgtgctaaggaagaaacacc 3694630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 390
Target Start/End: Original strand, 20017557 - 20017588
Alignment:
Q  359 ttatttctttccttccatatttcccacaccgt 390  Q
    ||||||||||||||||||||||||||||||||    
T  20017557 ttatttctttccttccatatttcccacaccgt 20017588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 301
Target Start/End: Complemental strand, 27302452 - 27302369
Alignment:
Q  218 agaatagtaaatagactctgccaccaaccatggtaattgagaggaagattgaatagtttcccctttaaccacatgaaagttaga 301  Q
    ||||||| ||| |||||  ||||||||||||| |||||||| |||||| | |   |||||||||| ||||||||| ||||||||    
T  27302452 agaatagaaaacagacttagccaccaaccatgataattgaggggaagactaacgtgtttccccttcaaccacatgtaagttaga 27302369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 407
Target Start/End: Complemental strand, 14788845 - 14788783
Alignment:
Q  345 cattggaaatttaattatttctttccttccatatttcccacaccgttgtaaaccatatgacct 407  Q
    ||||| ||||||  ||||||||||||||||| |||||||||||| | | |||||| |||||||    
T  14788845 cattgaaaattttgttatttctttccttccagatttcccacaccctagcaaaccaaatgacct 14788783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 52733969 - 52734011
Alignment:
Q  103 aaaggtcttcctagcacaaggtgtgctaaggaagaaacacctt 145  Q
    |||||||||||||||||||||||||| |||||| ||| |||||    
T  52733969 aaaggtcttcctagcacaaggtgtgcaaaggaataaaaacctt 52734011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 294
Target Start/End: Original strand, 43026321 - 43026394
Alignment:
Q  221 atagtaaatagactctgccaccaaccatggtaattgagaggaagattgaatagtttcccctttaaccacatgaa 294  Q
    |||||||| ||||| |||||||| |||||||||||||||||||||||    ||||||||||| |||||||||||    
T  43026321 atagtaaacagactgtgccaccacccatggtaattgagaggaagatttgcgagtttccccttcaaccacatgaa 43026394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 43026176 - 43026230
Alignment:
Q  89 tattaccatagcaaaaaggtcttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    |||||||| | ||||||  ||||||||||||||||||||||||||||||||||||    
T  43026176 tattaccacatcaaaaacttcttcctagcacaaggtgtgctaaggaagaaacacc 43026230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 35516932 - 35516889
Alignment:
Q  100 caaaaaggtcttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  35516932 caaaaaagtcttcctagcataaggtgtgctaaggaagaaacacc 35516889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 9628444 - 9628390
Alignment:
Q  89 tattaccatagcaaaaaggtcttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    ||||||||||  ||||||| |||||||||||||| |||||||| |||||||||||    
T  9628444 tattaccataataaaaaggccttcctagcacaagttgtgctaaagaagaaacacc 9628390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 24904953 - 24904987
Alignment:
Q  109 cttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    |||||||||||||||||||||||||||||||||||    
T  24904953 cttcctagcacaaggtgtgctaaggaagaaacacc 24904987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 47096445 - 47096403
Alignment:
Q  103 aaaggtcttcctagcacaaggtgtgctaaggaagaaacacctt 145  Q
    |||||||||||||||||||||||||| |||||| ||| |||||    
T  47096445 aaaggtcttcctagcacaaggtgtgcaaaggaataaaaacctt 47096403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 9628285 - 9628224
Alignment:
Q  237 gccaccaaccatggtaattgagaggaagattgaatagtttcccctttaaccacatgaaagtt 298  Q
    |||||||||||||||||||||  ||||||||||    |||||| || |||||||||||||||    
T  9628285 gccaccaaccatggtaattgaagggaagattgacgtatttccctttcaaccacatgaaagtt 9628224  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 16560055 - 16560010
Alignment:
Q  359 ttatttctttccttccatatttcccacaccgttgtaaaccatatga 404  Q
    ||||||||||| |||||||||||||||||||| | |||||| ||||    
T  16560055 ttatttctttctttccatatttcccacaccgtagcaaaccaaatga 16560010  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 16605607 - 16605652
Alignment:
Q  359 ttatttctttccttccatatttcccacaccgttgtaaaccatatga 404  Q
    ||||||||||| |||||||||||||||||||| | |||||| ||||    
T  16605607 ttatttctttctttccatatttcccacaccgtagcaaaccaaatga 16605652  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 27855118 - 27855078
Alignment:
Q  104 aaggtcttcctagcacaaggtgtgctaaggaagaaacacct 144  Q
    ||||||||||||||||||||||||| |||||| ||| ||||    
T  27855118 aaggtcttcctagcacaaggtgtgccaaggaataaaaacct 27855078  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 411
Target Start/End: Complemental strand, 43776304 - 43776130
Alignment:
Q  237 gccaccaaccatggtaattgagaggaagattgaatagtttcccctttaaccacatgaaagttagagccttgattctctctaccacctgcttaatagaaca 336  Q
    ||||||||||||| |||||||| || ||| |||    ||||||||| |||||||| || |||||||  || ||  | || |||||||||  |||||| ||    
T  43776304 gccaccaaccatgataattgaggggtagactgacgtatttccccttcaaccacataaaggttagagagttaatcttatccaccacctgcgaaatagagca 43776205  T
Q  337 attttttgcattggaaatttaattatttctttccttccatatttcccacaccgttgtaaaccatatgacctataa 411  Q
    | ||||  ||||| | ||   |||||||||||| ||||| ||||||||||| |||| |||||| |||||||||||    
T  43776204 aattttgtcattgaatatcctattatttctttctttccaaatttcccacactgttgcaaaccaaatgacctataa 43776130  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 43776469 - 43776415
Alignment:
Q  89 tattaccatagcaaaaaggtcttcctagcacaaggtgtgctaaggaagaaacacc 143  Q
    |||||||| | ||||| || |||||||||||||||||| ||||||||||||||||    
T  43776469 tattaccacaacaaaatggccttcctagcacaaggtgtactaaggaagaaacacc 43776415  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 407
Target Start/End: Complemental strand, 38738511 - 38738340
Alignment:
Q  237 gccaccaaccatggtaattgagaggaagattga-atagtttcccctttaaccacatgaaagttagagccttgattctctctaccacctgcttaatagaac 335  Q
    ||||||||||||| |||||||| |||||| ||| ||   |||||||| |||||| | ||||| || | ||| ||| | || |||| ||||  ||||||||    
T  38738511 gccaccaaccatgataattgaggggaagactgacatgtgttccccttcaaccacgtaaaagtaagggacttaattttatccaccatctgcggaatagaac 38738412  T
Q  336 aattttttgcattggaaatttaattatttctttccttccatatttcccacaccgttgtaaaccatatgacct 407  Q
    |||||||  | ||| ||||   ||| |||||||| ||||| |||||||| |||| || |||||| |||||||    
T  38738411 aatttttgtcgttgaaaatcctattgtttctttctttccaaatttcccataccgatgcaaaccaaatgacct 38738340  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 390
Target Start/End: Original strand, 447786 - 447814
Alignment:
Q  362 tttctttccttccatatttcccacaccgt 390  Q
    |||||||||||||||||||||||||||||    
T  447786 tttctttccttccatatttcccacaccgt 447814  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 38738676 - 38738624
Alignment:
Q  89 tattaccatagcaaaaaggtcttcctagcacaaggtgtgctaaggaagaaaca 141  Q
    |||||||| | |||| ||| ||||| |||||||| ||||||||||||||||||    
T  38738676 tattaccacaacaaacaggccttcccagcacaagatgtgctaaggaagaaaca 38738624  T

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Target: scaffold0777 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 139
Target Start/End: Complemental strand, 1117 - 1082
Alignment:
Q  104 aaggtcttcctagcacaaggtgtgctaaggaagaaa 139  Q
    |||| |||||||||||||||||||||||||||||||    
T  1117 aaggccttcctagcacaaggtgtgctaaggaagaaa 1082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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