View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19539_low_13 (Length: 436)
Name: NF19539_low_13
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19539_low_13 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 9 - 436
Target Start/End: Original strand, 40741611 - 40742038
Alignment:
| Q |
9 |
attatactctaatcatcaacatgctagttttgaattcattttgtctgttttggaatcaaaagagaattttcggtggcgtccttatgttgttgatttgaaa |
108 |
Q |
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| T |
40741611 |
attaaactctaatcatcaacatgctagttttgaattcattttgtctgttttggaatcaagagagaattttcggtggcgtccttatgttgttgatttgaaa |
40741710 |
T |
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| Q |
109 |
aattggtgctttgtgtcacactacaaagaaaatgaacaatatgttgatggttcaaattctgatttagcagaagagttgaagtgttttggagtgtgtttgt |
208 |
Q |
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| T |
40741711 |
aattggtgctttgtgtcacattgcaaagaaaatgaacaatatgttgatggttcaaattctgatttagcagaagagttgaagtgctttggagtgtgtttgt |
40741810 |
T |
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| Q |
209 |
gtgctgatgagcttgttggtttggattgtgttgagaagtatatgccatatagggtaggaatgcagtttggaatggatcaagatgttcctcctagtgagtt |
308 |
Q |
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| T |
40741811 |
gtgctgatgagcttgttggtttggattgtgttgagaagtatatgccatatagggtaggaatgcagtttggaatggatcaagatgttcctcctagtgagtt |
40741910 |
T |
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| Q |
309 |
cactgttctgagtccaagttacaagggaaattttagcttttatgttcctgcaagatgctacaaaccttgtttgtcattggaatatcacaattggtggaag |
408 |
Q |
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| T |
40741911 |
cactgttctgagtccaagttacaagggaaattttagcttttatgttcctgcaagatgctacaaaccttgtttgtcattggaatatcacaattggtggaag |
40742010 |
T |
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| Q |
409 |
aaatcaaaggtggatgattctgttctgt |
436 |
Q |
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| T |
40742011 |
aaatcaaaggtggatgattctgttctgt |
40742038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 98 - 430
Target Start/End: Complemental strand, 10326541 - 10326219
Alignment:
| Q |
98 |
ttgatttgaaaaattggtgctttgtgtcacactacaaagaaaatgaacaatatgttgatggttcaaattctgatttagcagaagagttgaagtgttttgg |
197 |
Q |
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| T |
10326541 |
ttgatttaaaaaattggtgctgtgt---acattacaaagaaaaggaacaatatgttgatggttcaaattgtcatttagcagaagatttgaagtgt----- |
10326450 |
T |
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| Q |
198 |
agtgtgtttgtgtgctgatgagcttgttggtttggattgt----gttgagaagtatatgccatatagggtaggaatgcagtttggaatggatcaagatgt |
293 |
Q |
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| T |
10326449 |
-----gttattgtgttgatgagcttgttggttttgattgtacatgttgagaagtatatgccatatagattaggaatgcagtttggaattgatcaagacgt |
10326355 |
T |
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| Q |
294 |
tcctcctagtgagttcactgttctgagtccaagttacaagggaaattttagcttttatgttcctgcaagatgctacaaaccttgtttgtcattggaatat |
393 |
Q |
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| T |
10326354 |
tcctcctagtgagttcactgttctgaatccaagtgacatgggaaattttagcttttatgttcctacaagatg-tttaagccttgtgtgtcattggaatat |
10326256 |
T |
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| Q |
394 |
cacaattggtggaagaaatcaaaggtggatgattctg |
430 |
Q |
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| T |
10326255 |
cacaattggtggaagaaattaaaggtggatgattctg |
10326219 |
T |
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