View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19539_low_14 (Length: 394)

Name: NF19539_low_14
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19539_low_14
NF19539_low_14
[»] chr6 (10 HSPs)
chr6 (1-90)||(28498454-28498543)
chr6 (1-90)||(29810865-29810954)
chr6 (126-298)||(29697681-29697846)
chr6 (323-372)||(29733311-29733360)
chr6 (323-372)||(29697590-29697639)
chr6 (253-304)||(29733414-29733465)
chr6 (330-372)||(28481358-28481400)
chr6 (330-372)||(29793781-29793823)
chr6 (174-218)||(28481710-28481754)
chr6 (174-218)||(29794133-29794177)
[»] chr8 (1 HSPs)
chr8 (326-372)||(12588324-12588370)
[»] scaffold0201 (1 HSPs)
scaffold0201 (337-370)||(13743-13776)


Alignment Details
Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 28498543 - 28498454
Alignment:
Q  1 aataacaaaagtatgatcgaaaattatcataataattgtcctaaaatgatagttttaatatcatctctaaacatttttgtttaatctata 90  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28498543 aataacaaaagtatgatcgaacattatcataaaaattgtcctaaaatgataattttaatatcatctctaaacatttttgtttaatctata 28498454  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 29810954 - 29810865
Alignment:
Q  1 aataacaaaagtatgatcgaaaattatcataataattgtcctaaaatgatagttttaatatcatctctaaacatttttgtttaatctata 90  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29810954 aataacaaaagtatgatcgaacattatcataaaaattgtcctaaaatgataattttaatatcatctctaaacatttttgtttaatctata 29810865  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 126 - 298
Target Start/End: Complemental strand, 29697846 - 29697681
Alignment:
Q  126 tactgacacaagcacgtcccagcattttaacatttctgcttaatcaata---tactgacaagcatgt--cccactttcttgactttagatactccaaaag 220  Q
    ||||||||||||| ||||||| || |||||||||||||||| |||||||   ||||||||||  |||  ||||| ||||||||||||||||||||||| |    
T  29697846 tactgacacaagcgcgtcccaacagtttaacatttctgcttgatcaataatatactgacaagtgtgtgtcccaccttcttgactttagatactccaaa-g 29697748  T
Q  221 tctttcttaagttcagcagtacagtcattcactcatcctagctcaattttatccaaacaactgttctttcatttgaat 298  Q
    ||||| | |||||||  |           |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29697747 tctttttgaagttcacta-----------cactcatcctagctcaattttatccaaacaactgttctttcatttgaat 29697681  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 323 - 372
Target Start/End: Complemental strand, 29733360 - 29733311
Alignment:
Q  323 caaatcaattcaagtatgatgtttttctcagctttcgaggtgaggatact 372  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29733360 caaatcgattcaagtatgatgtttttctcagctttcgaggtgaggatact 29733311  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 372
Target Start/End: Complemental strand, 29697639 - 29697590
Alignment:
Q  323 caaatcaattcaagtatgatgtttttctcagctttcgaggtgaggatact 372  Q
    ||||||||||||||||||||||||||||||| ||| |||| |||||||||    
T  29697639 caaatcaattcaagtatgatgtttttctcagttttagaggcgaggatact 29697590  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 304
Target Start/End: Complemental strand, 29733465 - 29733414
Alignment:
Q  253 tcatcctagctcaattttatccaaacaactgttctttcatttgaatctgaat 304  Q
    |||||||||||||||||| |  |||||||||||||||| |||||||||||||    
T  29733465 tcatcctagctcaattttctataaacaactgttctttcctttgaatctgaat 29733414  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 372
Target Start/End: Complemental strand, 28481400 - 28481358
Alignment:
Q  330 attcaagtatgatgtttttctcagctttcgaggtgaggatact 372  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  28481400 attcaagtacgatgttttcctcagctttcgaggtgaggatact 28481358  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 372
Target Start/End: Complemental strand, 29793823 - 29793781
Alignment:
Q  330 attcaagtatgatgtttttctcagctttcgaggtgaggatact 372  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  29793823 attcaagtacgatgttttcctcagctttcgaggtgaggatact 29793781  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 28481754 - 28481710
Alignment:
Q  174 atactgacaagcatgtcccactttcttgactttagatactccaaa 218  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||    
T  28481754 atactgacaagcgtgtcccactttcatgactttagatacttcaaa 28481710  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 29794177 - 29794133
Alignment:
Q  174 atactgacaagcatgtcccactttcttgactttagatactccaaa 218  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||    
T  29794177 atactgacaagcgtgtcccactttcatgactttagatacttcaaa 29794133  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 12588324 - 12588370
Alignment:
Q  326 atcaattcaagtatgatgtttttctcagctttcgaggtgaggatact 372  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  12588324 atcaattcaagtacgatgtttttctcagctttcgaggtgaggatact 12588370  T

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Target: scaffold0201 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 370
Target Start/End: Complemental strand, 13776 - 13743
Alignment:
Q  337 tatgatgtttttctcagctttcgaggtgaggata 370  Q
    |||||||||||||| |||||||||||||||||||    
T  13776 tatgatgtttttcttagctttcgaggtgaggata 13743  T

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