View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19539_low_15 (Length: 388)
Name: NF19539_low_15
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19539_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 14 - 375
Target Start/End: Original strand, 22547593 - 22547956
Alignment:
| Q |
14 |
tacttgttattattattttcttgtaatgtaagtggtctgaatttgaactaggtacaannnnnnnnnnnnnnn--aatagttgttgcatgtttggttgtta |
111 |
Q |
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| T |
22547593 |
tacttgttattattattttcttgtaatgtaagtggtctgaatttgaactaggtacaaacacacacacacacacaaatagttgttgcatgtttggttgtta |
22547692 |
T |
|
| Q |
112 |
gtcaggctcctatccacttgagcagaaaatggtaagtgcaaaagtggtaaccaaactattaatgtatctacatcattgattaatacattaaacttttatt |
211 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22547693 |
gtcaggctcctatccacttgagcagaaaatgataagtgtaaaagtggtaaccaaactattactgtatctacatcattgattaatacattaaacttttatt |
22547792 |
T |
|
| Q |
212 |
actatagctccaaaactcaactaggtcttcattttctgctctactttggttctaagttattagaaaatggtttcagctacttcttctcccccttctaagg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22547793 |
actatagctccaaaactcaactaggtcttcattttctgctctactttggttctaagttattagaaaatggtttcagctacttcttctctcccttctaagg |
22547892 |
T |
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| Q |
312 |
aggtaaggctttcaatcaagtttgtgttcactttacatctttaaattatttaagtatatttttt |
375 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22547893 |
aggtaaagctttcaatcaagtttgtgttcactttacatctttaaattatttaagtatatttttt |
22547956 |
T |
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