View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19539_low_17 (Length: 373)
Name: NF19539_low_17
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19539_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 17996363 - 17996017
Alignment:
| Q |
1 |
gaaggctttggcgtcaccgctactccggggaaatcgttcaaaaatgcgttgacgttggagaaggataattttccggttatgaatggggtttctccaacat |
100 |
Q |
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| T |
17996363 |
gaaggctttggcgtcaccgctactccggggaaatcgttcaaaaatgcgttgacgttggaaaaggataattttccgattttgaatggggttgctccaacat |
17996264 |
T |
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| Q |
101 |
tggaaattcttccatcggaggatatgctggactatttgcagtgggcctttataggggaactgttccatcataatgatgttttggaggtgcaacaagcttt |
200 |
Q |
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| T |
17996263 |
tggaaattgttccatcgaaggagatgctagactatttgcagtggacctttatgggggaactgttccatcagaaggatgctttggaggtgcaacaagcttt |
17996164 |
T |
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| Q |
201 |
ggttatggaaggcattcaaggtgttaaagtcacagagatgggagacagaaagatgctcctgcatattgaatgtatgaaggatattgatccagttcacaat |
300 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||| || |||| |||| |
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| T |
17996163 |
ggttatggaaggcattcgaggtgttaaagtcatagagatgggagacagaaagatgcttttgcatattgaaggtatgaaggatattgacccggttcgcaat |
17996064 |
T |
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| Q |
301 |
agccatctagcttggtgttattcaatgttttcttcggttagaaggtggacacct |
354 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
17996063 |
agccatctagcttggtg-------atattttcttcggttagaaggtggacacct |
17996017 |
T |
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