View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19539_low_19 (Length: 370)

Name: NF19539_low_19
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19539_low_19
NF19539_low_19
[»] chr6 (14 HSPs)
chr6 (16-354)||(5429189-5429535)
chr6 (245-349)||(5107953-5108057)
chr6 (264-351)||(5149873-5149960)
chr6 (255-341)||(5422040-5422126)
chr6 (256-351)||(5443942-5444037)
chr6 (265-351)||(5092785-5092871)
chr6 (265-347)||(5160673-5160755)
chr6 (279-354)||(5340415-5340490)
chr6 (256-349)||(5070590-5070683)
chr6 (251-340)||(5366339-5366428)
chr6 (257-340)||(5185038-5185121)
chr6 (248-341)||(5358315-5358408)
chr6 (267-351)||(5360766-5360850)
chr6 (265-351)||(5139720-5139806)
[»] scaffold0294 (1 HSPs)
scaffold0294 (270-349)||(6621-6700)
[»] chr7 (2 HSPs)
chr7 (257-351)||(34719934-34720028)
chr7 (312-350)||(34715172-34715210)
[»] chr3 (1 HSPs)
chr3 (265-351)||(48016293-48016379)
[»] chr4 (2 HSPs)
chr4 (270-339)||(4332498-4332567)
chr4 (265-349)||(25566888-25566972)


Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 354
Target Start/End: Original strand, 5429189 - 5429535
Alignment:
Q  16 ataatattaggctttaattatttgtttattaaattaaaggaaagcccatgagatccacggatacatataaaagtaatattttatggcacgtggagttgaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5429189 ataatattaggctttaattatttgtttattaaattaaaggaaagcccatgagatccacggatacatataaaagtaatattttatggcacgtggagttgaa 5429288  T
Q  116 cagatgactaaaccaattgattcgcgacgaccttagcttgacttcatcccctgctcacttgttaggcttttctttctttctttgttgaatccctcgcttc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5429289 cagatgactaaaccaattgattcgcgacgaccttagcttgacttcatcccctgctcacttgttaggcttttctttctttctttgttgaatccctcgcttc 5429388  T
Q  216 acttcgc--------ttcatccattcatgtcttctgcaagaaccgacacaaggatccatgacgtgttcctaagttttagaggcgaagatactcgaggatc 307  Q
    |||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5429389 acttcgcttcatccattcatccattcatgtcttctgcaagaaccgacacaaggatccatgacgtgttcctaagttttagaggcgaagatactcgaggatc 5429488  T
Q  308 gttcacttcacatctctatgcttctcttcaaaatgctggaattactg 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  5429489 gttcacttcacatctctatgcttctcttcaaaatgctggaattactg 5429535  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 245 - 349
Target Start/End: Complemental strand, 5108057 - 5107953
Alignment:
Q  245 aagaaccgacacaaggatccatgacgtgttcctaagttttagaggcgaagatactcgaggatcgttcacttcacatctctatgcttctcttcaaaatgct 344  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |  || ||||||||||||||||||||||||||||| || |||    
T  5108057 aagaaccgacacaaggatccatgacgtgttcctaagtttcagaggcaaagatactcgtgcttccttcacttcacatctctatgcttctcttcagaacgct 5107958  T
Q  345 ggaat 349  Q
    |||||    
T  5107957 ggaat 5107953  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 351
Target Start/End: Complemental strand, 5149960 - 5149873
Alignment:
Q  264 catgacgtgttcctaagttttagaggcgaagatactcgaggatcgttcacttcacatctctatgcttctcttcaaaatgctggaatta 351  Q
    ||||| |||||| ||||||||||||| |||||||| || | ||| |||||||||||||||||||||||||||||||||||||||||||    
T  5149960 catgaagtgttcttaagttttagaggggaagatacgcgcgcatcattcacttcacatctctatgcttctcttcaaaatgctggaatta 5149873  T

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Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 5422040 - 5422126
Alignment:
Q  255 acaaggatccatgacgtgttcctaagttttagaggcgaagatactcgaggatcgttcacttcacatctctatgcttctcttcaaaat 341  Q
    |||||||||||||| |||||| ||||||||||||| || |||||||| | ||| |||||||||||||||||||||||||||||||||    
T  5422040 acaaggatccatgatgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatctctatgcttctcttcaaaat 5422126  T

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Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 256 - 351
Target Start/End: Original strand, 5443942 - 5444037
Alignment:
Q  256 caaggatccatgacgtgttcctaagttttagaggcgaagatactcgaggatcgttcacttcacatctctatgcttctcttcaaaatgctggaatta 351  Q
    |||||||||||||||||||| |||||||||||||  |||||||||| |  || |||||||||||||| |||||| |||||||||| ||||||||||    
T  5443942 caaggatccatgacgtgttcttaagttttagagggaaagatactcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaatta 5444037  T

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Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 265 - 351
Target Start/End: Original strand, 5092785 - 5092871
Alignment:
Q  265 atgacgtgttcctaagttttagaggcgaagatactcgaggatcgttcacttcacatctctatgcttctcttcaaaatgctggaatta 351  Q
    |||| |||||| |||||||||||||  |||||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||||    
T  5092785 atgaagtgttcttaagttttagaggaaaagatactcgtgcatcattcacttcacatctctatgcttcacttcaaaatgctggaatta 5092871  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 265 - 347
Target Start/End: Complemental strand, 5160755 - 5160673
Alignment:
Q  265 atgacgtgttcctaagttttagaggcgaagatactcgaggatcgttcacttcacatctctatgcttctcttcaaaatgctgga 347  Q
    |||| |||||| |||||||||||||  |||||||||| | ||| ||||||||||||||||||||| | |||||||| ||||||    
T  5160755 atgaagtgttcttaagttttagaggaaaagatactcgtgcatcattcacttcacatctctatgctgcacttcaaaacgctgga 5160673  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 354
Target Start/End: Original strand, 5340415 - 5340490
Alignment:
Q  279 agttttagaggcgaagatactcgaggatcgttcacttcacatctctatgcttctcttcaaaatgctggaattactg 354  Q
    |||||||||||  | || ||||| | ||| ||||||||||||||||||||| | ||||||||||||||||||||||    
T  5340415 agttttagagggaaggacactcgtgtatccttcacttcacatctctatgctgcacttcaaaatgctggaattactg 5340490  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 349
Target Start/End: Complemental strand, 5070683 - 5070590
Alignment:
Q  256 caaggatccatgacgtgttcctaagttttagaggcgaagatactcgaggatcgttcacttcacatctctatgcttctcttcaaaatgctggaat 349  Q
    ||||||||||||| |||||| ||||||| ||||| || || |||||    || |||||||||||||||||||||||||||| |||  |||||||    
T  5070683 caaggatccatgatgtgttcttaagtttcagaggagaggacactcgctcttcattcacttcacatctctatgcttctcttcgaaactctggaat 5070590  T

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Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 340
Target Start/End: Original strand, 5366339 - 5366428
Alignment:
Q  251 cgacacaaggatccatgacgtgttcctaagttttagaggcgaagatactcgaggatcgttcacttcacatctctatgcttctcttcaaaa 340  Q
    ||||||| |||| ||||| ||||||||||||||||| ||  | || || || | ||| |||||||| |||||||||||||||||||||||    
T  5366339 cgacacatggatgcatgatgtgttcctaagttttagtggaaaggagacgcgtgcatctttcacttcgcatctctatgcttctcttcaaaa 5366428  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 340
Target Start/End: Complemental strand, 5185121 - 5185038
Alignment:
Q  257 aaggatccatgacgtgttcctaagttttagaggcgaagatactcgaggatcgttcacttcacatctctatgcttctcttcaaaa 340  Q
    |||||||||||| |||||| ||||||||||||| |||||||||||    || || ||||||||||||||| |  ||||||||||    
T  5185121 aaggatccatgatgtgttcttaagttttagaggggaagatactcgttcttcctttacttcacatctctattccgctcttcaaaa 5185038  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 341
Target Start/End: Complemental strand, 5358408 - 5358315
Alignment:
Q  248 aaccgacacaaggatccatgacgtgttcctaagttttagaggcgaagatactcgaggatcgttcacttcacatctctatgcttctcttcaaaat 341  Q
    ||||| ||||||||||||||| |||||| | ||||| ||||| || || ||||  |  |  ||||||||||||||||||||||| |||||||||    
T  5358408 aaccggcacaaggatccatgatgtgttcttgagtttcagaggagaggacactcatgcttgcttcacttcacatctctatgcttcccttcaaaat 5358315  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 351
Target Start/End: Original strand, 5360766 - 5360850
Alignment:
Q  267 gacgtgttcctaagttttagaggcgaagatactcgaggatcgttcacttcacatctctatgcttctcttcaaaatgctggaatta 351  Q
    ||||||||| |||||||||| || || ||||||||    || ||||||||||||||||| ||| | |||||||||| ||||||||    
T  5360766 gacgtgttcttaagttttaggggagaggatactcgttcttccttcacttcacatctctacgctgcacttcaaaatgttggaatta 5360850  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 351
Target Start/End: Complemental strand, 5139806 - 5139720
Alignment:
Q  265 atgacgtgttcctaagttttagaggcgaagatactcgaggatcgttcacttcacatctctatgcttctcttcaaaatgctggaatta 351  Q
    |||| ||||||||||||||| ||||  |||| |||||   ||| ||||||||||||||    |||||||||||||||| ||||||||    
T  5139806 atgaagtgttcctaagtttttgagggaaagacactcgttcatccttcacttcacatcttcccgcttctcttcaaaatgttggaatta 5139720  T

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Target: scaffold0294 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 349
Target Start/End: Complemental strand, 6700 - 6621
Alignment:
Q  270 gtgttcctaagttttagaggcgaagatactcgaggatcgttcacttcacatctctatgcttctcttcaaaatgctggaat 349  Q
    |||||| |||||||||||||  | |||||||  |  || ||||||||||||||||||||||| |||||||| ||||||||    
T  6700 gtgttcttaagttttagagggaacgatactcacgtttcattcacttcacatctctatgcttcacttcaaaacgctggaat 6621  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 34720028 - 34719934
Alignment:
Q  257 aaggatccatgacgtgttcctaagttttagaggcgaagatactcgaggatcgttcacttcacatctctatgcttctcttcaaaatgctggaatta 351  Q
    ||||||| |||| |||||| | ||||| ||||| ||||||||||| | |   |||| ||||||||||||| | ||||||||||||||| ||||||    
T  34720028 aaggatctatgatgtgttcttgagtttcagaggggaagatactcgtgcaagattcatttcacatctctatacctctcttcaaaatgctagaatta 34719934  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 34715210 - 34715172
Alignment:
Q  312 acttcacatctctatgcttctcttcaaaatgctggaatt 350  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  34715210 acttcacatctctatacctctcttcaaaatgctggaatt 34715172  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 351
Target Start/End: Complemental strand, 48016379 - 48016293
Alignment:
Q  265 atgacgtgttcctaagttttagaggcgaagatactcgaggatcgttcacttcacatctctatgcttctcttcaaaatgctggaatta 351  Q
    |||| ||||||||||||||| ||||| |||| || || |  || || ||||| |||||||||||||||||||||||  |||||||||    
T  48016379 atgaagtgttcctaagttttcgaggcaaagacacacgtgcttcctttacttcgcatctctatgcttctcttcaaaactctggaatta 48016293  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 4332498 - 4332567
Alignment:
Q  270 gtgttcctaagttttagaggcgaagatactcgaggatcgttcacttcacatctctatgcttctcttcaaa 339  Q
    |||||| | ||||||||||||||||| ||||| | ||| |||||||||||||||| | | ||||||||||    
T  4332498 gtgttcttgagttttagaggcgaagacactcgcgcatcattcacttcacatctctctacatctcttcaaa 4332567  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 25566888 - 25566972
Alignment:
Q  265 atgacgtgttcctaagttttagaggcgaagatactcgaggatcgttcacttcacatctctatgcttctcttcaaaatgctggaat 349  Q
    |||| |||||| |||||| |||||| || || ||||| |  || |||||  |||||||| |||||||||||| ||||||||||||    
T  25566888 atgaagtgttcttaagttatagaggggaggacactcgtgcttctttcaccgcacatctcaatgcttctcttctaaatgctggaat 25566972  T

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