View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19539_low_20 (Length: 358)

Name: NF19539_low_20
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19539_low_20
NF19539_low_20
[»] chr4 (30 HSPs)
chr4 (16-340)||(3438463-3438784)
chr4 (118-236)||(8184031-8184149)
chr4 (16-303)||(546791-547078)
chr4 (118-237)||(8187091-8187210)
chr4 (125-326)||(553466-553667)
chr4 (25-191)||(370806-370973)
chr4 (86-290)||(1548370-1548575)
chr4 (118-307)||(7225813-7226002)
chr4 (118-235)||(7307840-7307957)
chr4 (34-326)||(1524397-1524686)
chr4 (16-308)||(640793-641085)
chr4 (79-238)||(1537766-1537925)
chr4 (118-329)||(55908636-55908847)
chr4 (117-329)||(12121365-12121577)
chr4 (166-329)||(1600447-1600610)
chr4 (126-182)||(558486-558542)
chr4 (265-329)||(6006455-6006519)
chr4 (166-242)||(12116570-12116646)
chr4 (128-237)||(1513407-1513516)
chr4 (264-329)||(1533898-1533963)
chr4 (122-242)||(570335-570455)
chr4 (152-236)||(1519143-1519227)
chr4 (122-290)||(1552711-1552882)
chr4 (128-204)||(1508036-1508112)
chr4 (263-307)||(53761702-53761746)
chr4 (86-159)||(644779-644852)
chr4 (264-329)||(1495830-1495895)
chr4 (16-137)||(1545651-1545772)
chr4 (266-327)||(12120052-12120113)
chr4 (89-189)||(1517544-1517644)
[»] chr8 (9 HSPs)
chr8 (13-221)||(17628030-17628238)
chr8 (13-242)||(32151176-32151405)
chr8 (31-329)||(18315181-18315479)
chr8 (122-303)||(34936097-34936278)
chr8 (44-326)||(28246206-28246486)
chr8 (86-235)||(27922456-27922605)
chr8 (112-236)||(17636402-17636526)
chr8 (122-239)||(21235542-21235659)
chr8 (127-176)||(44736524-44736573)
[»] chr3 (8 HSPs)
chr3 (130-303)||(51120827-51121000)
chr3 (25-191)||(514774-514940)
chr3 (112-307)||(13470662-13470857)
chr3 (79-307)||(51113711-51113939)
chr3 (118-305)||(51764372-51764559)
chr3 (104-233)||(1657217-1657346)
chr3 (150-212)||(27005797-27005859)
chr3 (265-329)||(1657374-1657438)
[»] chr6 (21 HSPs)
chr6 (99-326)||(11936186-11936413)
chr6 (99-326)||(11948166-11948393)
chr6 (86-303)||(6585171-6585388)
chr6 (128-307)||(6432151-6432330)
chr6 (121-307)||(7119140-7119326)
chr6 (121-307)||(7131618-7131804)
chr6 (128-307)||(6402850-6403029)
chr6 (112-307)||(6415940-6416135)
chr6 (122-212)||(6423201-6423291)
chr6 (130-307)||(6394856-6395033)
chr6 (128-307)||(6594536-6594715)
chr6 (62-307)||(14820617-14820862)
chr6 (128-212)||(10579761-10579845)
chr6 (128-238)||(6409996-6410106)
chr6 (145-235)||(28935056-28935146)
chr6 (86-159)||(6426459-6426532)
chr6 (110-303)||(7994116-7994309)
chr6 (262-329)||(9411476-9411543)
chr6 (121-159)||(19632422-19632460)
chr6 (266-307)||(8913914-8913955)
chr6 (146-238)||(12102274-12102366)
[»] chr5 (8 HSPs)
chr5 (80-235)||(32267417-32267572)
chr5 (122-328)||(41889463-41889669)
chr5 (65-230)||(41901542-41901707)
chr5 (128-199)||(37937877-37937948)
chr5 (68-199)||(38267594-38267725)
chr5 (265-328)||(32267599-32267662)
chr5 (265-328)||(41901447-41901510)
chr5 (87-180)||(12845542-12845635)
[»] chr2 (3 HSPs)
chr2 (128-303)||(45245019-45245194)
chr2 (118-329)||(1037572-1037783)
chr2 (123-210)||(32785799-32785886)
[»] chr7 (3 HSPs)
chr7 (112-307)||(15092081-15092276)
chr7 (166-324)||(7977606-7977764)
chr7 (122-307)||(10614577-10614762)
[»] chr1 (5 HSPs)
chr1 (111-204)||(29658929-29659022)
chr1 (44-204)||(29718956-29719116)
chr1 (121-204)||(7554471-7554554)
chr1 (139-235)||(52082582-52082678)
chr1 (133-307)||(19468429-19468603)
[»] scaffold0295 (1 HSPs)
scaffold0295 (118-329)||(532-743)
[»] scaffold0807 (1 HSPs)
scaffold0807 (263-307)||(1394-1438)
[»] scaffold0014 (1 HSPs)
scaffold0014 (265-302)||(88943-88980)
[»] scaffold0041 (1 HSPs)
scaffold0041 (118-164)||(39164-39210)


Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 340
Target Start/End: Complemental strand, 3438784 - 3438463
Alignment:
Q  16 attagcatacacttgatcacaaccccttaaattgacctccctcggttgtgtacagtttttcatcacatacttcactcccttcactgtgacacctttacaa 115  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3438784 attagcatacacttgatcgcaaccccttaaattgacctccctcggttgt--acagtttttcatcacatacttcactcccttcactgtgacacctttacaa 3438687  T
Q  116 aattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaatt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  3438686 aattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagta-tttatcatcaactcttgtatgtgacaagctcaatacctccaatt 3438588  T
Q  216 ttgaaacatcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttgaataacacc 315  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3438587 ttgaaacatcaaagttcattgcacacaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacatctccttaaaacttgaataacacc 3438488  T
Q  316 ttcgtcagatatgtggtcgcattct 340  Q
    |||||||||||||| ||||||||||    
T  3438487 ttcgtcagatatgtagtcgcattct 3438463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 8184149 - 8184031
Alignment:
Q  118 ttccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaatttt 217  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||| ||||| | |||     
T  8184149 ttccagtaacagttccaaaagcccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttc 8184050  T
Q  218 gaaacatcaaagttcattc 236  Q
    | ||| |||||||||||||    
T  8184049 ggaacttcaaagttcattc 8184031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 303
Target Start/End: Original strand, 546791 - 547078
Alignment:
Q  16 attagcatacacttgatcacaaccccttaaattgacctccctcggttgtgtacagtttttcatcacatacttcactcccttcactgtgacacctttacaa 115  Q
    |||| ||| ||||| || |||| |||||||||||| ||| ||  ||| ||| |||||||  | |||||  |||||||||||| ||||||||     |||     
T  546791 attaacattcactttattacaagcccttaaattgatctctcttagttttgtgcagttttctagcacatgtttcactcccttctctgtgacatgaaaacat 546890  T
Q  116 aattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaatt 215  Q
      ||||||||||| || ||||||||||||||||||||||||||| |||| ||||| || |||||  ||  ||||| |||||||| |||  ||||||||||    
T  546891 tcttccagtaacaattccaaaagcccacaacaactctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatt 546990  T
Q  216 ttgaaacatcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaac 303  Q
    | | ||| |||||||||||||||   |  |||||| ||||||||   | |||||||||||| || |||||||||| ||||||||||||    
T  546991 taggaacttcaaagttcattccaaataggttcactactaaacaattggataagttcaaatgccttatcttacaacatctccttaaaac 547078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 118 - 237
Target Start/End: Complemental strand, 8187210 - 8187091
Alignment:
Q  118 ttccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaatttt 217  Q
    |||||||||||  |||||||||||||||||||||||||| ||| |||  |||| |||||||||||||||||||||||||||| |||| ||||||| |||     
T  8187210 ttccagtaacaactgcaaaagcccacaacaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttg 8187111  T
Q  218 gaaacatcaaagttcattcc 237  Q
    ||||  ||||||||||||||    
T  8187110 gaaatttcaaagttcattcc 8187091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 125 - 326
Target Start/End: Original strand, 553466 - 553667
Alignment:
Q  125 aacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacat 224  Q
    |||||||||||||||||| ||||||||||||| || ||||  ||||||| ||||||||||||||||  ||||||| |||| ||||||| |||   ||| |    
T  553466 aacagttgcaaaagcccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactt 553565  T
Q  225 caaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttgaataacaccttcgtcaga 324  Q
     |||||||| |  ||| || ||||||| | |||| |  | |||||||||||||||||| ||||||| | |||||||||| |||| |||| |||| |||||    
T  553566 taaagttcaatgtacgtaacttcactcttgaacagcgggttaagttcaaatgtctaatgttacaacatgtccttaaaacatgaacaacagcttcttcaga 553665  T
Q  325 ta 326  Q
    ||    
T  553666 ta 553667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 25 - 191
Target Start/End: Original strand, 370806 - 370973
Alignment:
Q  25 cacttgatcacaaccccttaaattgacctccctc-ggttgtgtacagtttttcatcacatacttcactcccttcactgtgacacctttacaaaattccag 123  Q
    ||||| || |||||| |||||||||| ||| ||| |||||||| |||||||||| ||||| |||||||||| ||  ||||| ||||| ||||  || |||    
T  370806 cactttattacaaccgcttaaattgatctctctcaggttgtgtgcagtttttcaccacatgcttcactcccatctttgtgataccttcacaattttgcag 370905  T
Q  124 taacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtat 191  Q
    ||| ||||||||||||| |||||||||||||||||| ||||| ||||||| || ||  ||||||||||    
T  370906 taatagttgcaaaagccgacaacaactctttgagatcacatgaagtgcttcataatagactcttgtat 370973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 290
Target Start/End: Complemental strand, 1548575 - 1548370
Alignment:
Q  86 ttcactcccttcactgtgacacctttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactc 185  Q
    |||||||||||| |||||| |  |||||||  ||   ||||||  ||||||||||||||||||||||||||||| |||| ||||| || ||||||||  |    
T  1548575 ttcactcccttctctgtgatatttttacaacgtttttgtaacaagtgcaaaagcccacaacaactctttgagatcacattgagtgtttcatcatcaatac 1548476  T
Q  186 ttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattcc-acgcaaattcactcctaaacaaccagctaagttcaaatgtctaatct 284  Q
    |||||||||||||| |||| ||||||| ||| | ||  |||||||||| ||| | | |  ||||||  ||||| || |||||||||||| ||||||||||    
T  1548475 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaaagtagcttcacttttaaactacgagctaagttcaactgtctaatct 1548376  T
Q  285 tacaac 290  Q
    ||||||    
T  1548375 tacaac 1548370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 118 - 307
Target Start/End: Complemental strand, 7226002 - 7225813
Alignment:
Q  118 ttccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaatttt 217  Q
    ||||||||| ||||||||||| ||||||||||||||||| || ||| | ||| |||| |||||||||||||||||||||||| |||| ||||||||||      
T  7226002 ttccagtaatagttgcaaaagtccacaacaactctttgatatcacacgaagtcctttgtcatcaactcttgtatgtgacaagttcaagacctccaattcg 7225903  T
Q  218 gaaacatcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttga 307  Q
      ||| |||||||||||    || |  ||||||| |  |||    | |||||||||||||||||||||||||| ||||| ||||||||||    
T  7225902 agaacttcaaagttcatgttgcgtagcttcactcttggacagtaggataagttcaaatgtctaatcttacaacatctccgtaaaacttga 7225813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 118 - 235
Target Start/End: Original strand, 7307840 - 7307957
Alignment:
Q  118 ttccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaatttt 217  Q
    |||||||||||| |||||||||| |||||||||||||||||| | | | ||||||| ||||||||||  ||||| ||||||| ||||||||||||||||     
T  7307840 ttccagtaacaggtgcaaaagcctacaacaactctttgagatcatacgtagtgcttcatcatcaacttctgtatatgacaagttcaatacctccaatttg 7307939  T
Q  218 gaaacatcaaagttcatt 235  Q
    | ||| | ||||||||||    
T  7307940 ggaactttaaagttcatt 7307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 34 - 326
Target Start/End: Complemental strand, 1524686 - 1524397
Alignment:
Q  34 acaaccccttaaattgacctccctcggttgtgtacagtttttcatcacatacttcactcccttcactgtgacacctttacaaaattccagtaacagttgc 133  Q
    ||||||||| ||||| | ||| ||| ||||||| |||||||  |||||||| ||||||||| || ||||||||   | ||||     || ||||||||||    
T  1524686 acaacccctcaaattaatctctctcagttgtgtgcagttttctatcacataattcactcccctctctgtgaca---taacaactacgcaataacagttgc 1524590  T
Q  134 aaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttca 233  Q
    |||||||||| |||||||| |||||| | || ||||| || ||||||||| |||||| |||||||  |||| |||||||| || | ||| ||||||||||    
T  1524589 aaaagcccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaagttca 1524490  T
Q  234 ttccacgcaaattcactccta-aacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttgaataacaccttcgtcagata 326  Q
    ||||| | || |||  |  || ||||    |||||||||||||| ||||  ||||||| |||||||||||| |||| || |||||| |||||||    
T  1524489 ttccatg-aagttctattttagaacagttggctaagttcaaatgcctaagtttacaacatctccttaaaacctgaagaataccttcttcagata 1524397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 640793 - 641085
Alignment:
Q  16 attagcatacacttgatcacaaccccttaaattgacctccctcggttgtgtacagtttttcatcacatacttcactcccttcactgtgacacctttacaa 115  Q
    |||||||| ||||| || ||||||| ||||||||||||| ||   || | | |||||||  | |||||  ||||||||||||  ||| |||   | ||||    
T  640793 attagcattcactttattacaaccctttaaattgacctctcttaattctttgcagttttctaccacatgattcactcccttctttgttacataatgacaa 640892  T
Q  116 aattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaatt 215  Q
      |||||||||||| |||||||| ||||  ||| |||||||| | || | ||||| || |||||||||  |||||| ||||||| |||| |||||||||     
T  640893 tcttccagtaacagatgcaaaagaccacggcaattctttgaggtcacgtagagtgtttcatcatcaacgtttgtatctgacaagttcaacacctccaata 640992  T
Q  216 ttgaaacatcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttgaa 308  Q
    |||  |  ||||| ||||||||| | |  || |||||   |||||| |||||||||||||||||||  ||||||| | |||||||||||||||    
T  640993 ttggtagttcaaatttcattccaagtaggtttactccatcacaaccggctaagttcaaatgtctaacattacaacatatccttaaaacttgaa 641085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 79 - 238
Target Start/End: Complemental strand, 1537925 - 1537766
Alignment:
Q  79 cacatacttcactcccttcactgtgacacctttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatca 178  Q
    |||||||||||||||||||  |||||||   | ||||| ||||||||| |||||||||||||||| ||||| |||||||||||||   |||| ||| |||    
T  1537925 cacatacttcactcccttctgtgtgacaagataacaaagttccagtaaaagttgcaaaagcccacgacaacactttgagattacacacagtgttttgtca 1537826  T
Q  179 tcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattcca 238  Q
    | |||  |||||| ||||||| |||| || || | ||| | ||| |||||||||||||||    
T  1537825 ttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcca 1537766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 118 - 329
Target Start/End: Complemental strand, 55908847 - 55908636
Alignment:
Q  118 ttccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaatttt 217  Q
    |||||| |||||||| ||||||||||||||| |||||||||| | || ||||| || ||||||||| | ||||||||||||| | || ||||| ||||      
T  55908847 ttccagaaacagttgtaaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattca 55908748  T
Q  218 gaaacatcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttgaataacacctt 317  Q
    | ||| | |||||| |||| | | |  ||||||| | ||||    ||||| ||||||||||||| |||||||| |||||||| ||||| |  || |||||    
T  55908747 ggaactttaaagtttattctaagtagtttcactcttgaacagtaggctaaattcaaatgtctaaccttacaacatctccttagaacttcacaaatacctt 55908648  T
Q  318 cgtcagatatgt 329  Q
    | ||||||||||    
T  55908647 cttcagatatgt 55908636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 329
Target Start/End: Complemental strand, 12121577 - 12121365
Alignment:
Q  117 attccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattt 216  Q
    |||||||| | ||||||||||||||||  |||| ||||||||||||   ||||| || |||||||||  |||||| ||||||| |||| || || | |||    
T  12121577 attccagtgagagttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagttt 12121478  T
Q  217 tgaaacatcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttgaataacacct 316  Q
     | ||| |||||||||||||  ||||  |||  |||||||||||  | ||||||||||||  ||||||   ||| | ||||||| ||||| | || ||||    
T  12121477 gggaacttcaaagttcattcggcgcagcttccttcctaaacaactggttaagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaatacct 12121378  T
Q  317 tcgtcagatatgt 329  Q
    || ||||||||||    
T  12121377 tcttcagatatgt 12121365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 329
Target Start/End: Original strand, 1600447 - 1600610
Alignment:
Q  166 gagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattccacgcaaattcactcctaaacaaccagct 265  Q
    |||||||| ||| ||||| ||||||| ||||||| |||| ||||||| |||   ||| |||||||||||||| ||||  |||| |  | ||||    |||    
T  1600447 gagtgcttcatcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggct 1600546  T
Q  266 aagttcaaatgtctaatcttacaacgtctccttaaaacttgaataacaccttcgtcagatatgt 329  Q
    ||||||||||||||||| ||| ||  ||||||||||||||||  || |||||| ||||||||||    
T  1600547 aagttcaaatgtctaattttagaaaatctccttaaaacttgacaaataccttcttcagatatgt 1600610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 558486 - 558542
Alignment:
Q  126 acagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaa 182  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  558486 acagttccaaaagcccacgacaactctttgagatcacatggagtgcttcatcatcaa 558542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 6006455 - 6006519
Alignment:
Q  265 taagttcaaatgtctaatcttacaacgtctccttaaaacttgaataacaccttcgtcagatatgt 329  Q
    ||||||||||||||||||||||| || | ||||||||||||||  ||||||||| ||||||||||    
T  6006455 taagttcaaatgtctaatcttactacatttccttaaaacttgagcaacaccttcatcagatatgt 6006519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 12116646 - 12116570
Alignment:
Q  166 gagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattccacgca 242  Q
    ||||| || ||||||||| ||||||||||||||| |||| ||||| || |||| ||||||||||||||||| |||||    
T  12116646 gagtgattcatcatcaacacttgtatgtgacaagttcaacacctctaaatttggaacatcaaagttcattctacgca 12116570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 1513516 - 1513407
Alignment:
Q  128 agttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaa 227  Q
    |||||||||||||||| ||||| |||||||||||| | ||||| || |||||||||  |||||  ||||||| |||| || || | ||| | ||| ||||    
T  1513516 agttgcaaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaa 1513417  T
Q  228 agttcattcc 237  Q
    ||||||||||    
T  1513416 agttcattcc 1513407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 329
Target Start/End: Complemental strand, 1533963 - 1533898
Alignment:
Q  264 ctaagttcaaatgtctaatcttacaacgtctccttaaaacttgaataacaccttcgtcagatatgt 329  Q
    |||||||||||||| | |||||||||| |||||||||||| ||| ||| |||||| ||||||||||    
T  1533963 ctaagttcaaatgtgtcatcttacaacatctccttaaaacatgactaataccttcttcagatatgt 1533898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 242
Target Start/End: Original strand, 570335 - 570455
Alignment:
Q  122 agtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaa 221  Q
    |||||||||||||||||||| | |||||||||||| || | || |||| |||  | |||||||| ||||| ||||||| |||| ||||| | |||   ||    
T  570335 agtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctcgagtttgagaa 570434  T
Q  222 catcaaagttcattccacgca 242  Q
    | |||||||||| ||||||||    
T  570435 cttcaaagttcaatccacgca 570455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 1519227 - 1519143
Alignment:
Q  152 tttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattc 236  Q
    |||||||| |||| ||||||||  |||||||| ||||||||||||||| |||| ||||| | ||| | ||| |||||||||||||    
T  1519227 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattc 1519143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 290
Target Start/End: Complemental strand, 1552882 - 1552711
Alignment:
Q  122 agtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaa 221  Q
    |||||||| ||||||||||||| |||| ||||||| || |||| ||||| || ||||| ||   |||||||||||||  |||| || |||| ||| | ||    
T  1552882 agtaacagctgcaaaagcccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaa 1552783  T
Q  222 catcaaagttcattccacgcaaattcactcctaaacaacca---gctaagttcaaatgtctaatcttacaac 290  Q
      |||||||||| |||| | |  ||| || ||| | ||| |   ||||||||||||||||||||||||||||    
T  1552782 tttcaaagttcagtccaagtagcttcccttctataaaactatgggctaagttcaaatgtctaatcttacaac 1552711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 1508112 - 1508036
Alignment:
Q  128 agttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaa 204  Q
    |||||||||||||||| ||||| |||||||||||||   |||| || |||||||||  | |||||||||||| ||||    
T  1508112 agttgcaaaagcccacgacaacactttgagattacacacagtgtttcatcatcaacattggtatgtgacaagttcaa 1508036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 53761746 - 53761702
Alignment:
Q  263 gctaagttcaaatgtctaatcttacaacgtctccttaaaacttga 307  Q
    |||||||||||||| ||||| ||||||| ||||||||||||||||    
T  53761746 gctaagttcaaatgcctaatgttacaacatctccttaaaacttga 53761702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 159
Target Start/End: Original strand, 644779 - 644852
Alignment:
Q  86 ttcactcccttcactgtgacacctttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagat 159  Q
    |||||||| ||| | |||||||||| ||||||||  ||| ||||||||| |||||| |  ||||||||||||||    
T  644779 ttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgcacaagcccgctgcaactctttgagat 644852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 329
Target Start/End: Complemental strand, 1495895 - 1495830
Alignment:
Q  264 ctaagttcaaatgtctaatcttacaacgtctccttaaaacttgaataacaccttcgtcagatatgt 329  Q
    |||||| ||||||| | |||||||||| |||||||||||| |||  || |||||| ||||||||||    
T  1495895 ctaagtccaaatgtgtcatcttacaacatctccttaaaacatgaccaataccttcttcagatatgt 1495830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 1545651 - 1545772
Alignment:
Q  16 attagcatacacttgatcacaaccccttaaattgacctccctcggttgtgtacagtttttcatcacatacttcactcccttcactgtgacacctttacaa 115  Q
    |||||||| ||||| |||||||||||| ||||||| | | ||  ||||||| |||||||| | | |||  ||||||||||||  |||||| |  | ||||    
T  1545651 attagcatgcactttatcacaacccctcaaattgatcactcttagttgtgtgcagttttttaccgcatctttcactcccttctatgtgacgcactcacaa 1545750  T
Q  116 aattccagtaacagttgcaaaa 137  Q
     || ||| ||||||||||||||    
T  1545751 tataccaataacagttgcaaaa 1545772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 12120113 - 12120052
Alignment:
Q  266 aagttcaaatgtctaatcttacaacgtctccttaaaacttgaataacaccttcgtcagatat 327  Q
    |||||||||||||||||||||| || | || |||||||||||  || |||||||| ||||||    
T  12120113 aagttcaaatgtctaatcttactacttttctttaaaacttgaccaataccttcgttagatat 12120052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 1517644 - 1517544
Alignment:
Q  89 actcccttcactgtgacacctttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttg 188  Q
    ||||||||| |||||||| | | ||||  ||||||||| |||| |||||  |||| |||| ||||||||||||||  |||||| | ||| | ||||||||    
T  1517644 actcccttctctgtgacatcatgacaattttccagtaatagtttcaaaattccacgacaattctttgagattacaaagagtgcgtcatcgttaactcttg 1517545  T
Q  189 t 189  Q
    |    
T  1517544 t 1517544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 9e-55; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 17628238 - 17628030
Alignment:
Q  13 aatattagcatacacttgatcacaaccccttaaattgacctccctcggttgtgtacagtttttcatcacatacttcactcccttcactgtgacaccttta 112  Q
    ||||||||| | ||||| || ||||||||||||| ||| ||||||| | ||||| |||||||||| ||||| ||||||||||||  ||||||||||||||    
T  17628238 aatattagctttcacttcataacaaccccttaaactgatctccctcagctgtgtgcagtttttcaacacatgcttcactcccttgtctgtgacaccttta 17628139  T
Q  113 caaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctcca 212  Q
    |||||||| ||||| |||| ||| |||||| ||||| |||||||||| ||| |||||||||||||||||||||| |||||||||||| |||| |||||||    
T  17628138 caaaattctagtaatagtttcaagagcccaaaacaattctttgagatcacacggagtgctttatcatcaactctagtatgtgacaagttcaacacctcca 17628039  T
Q  213 attttgaaa 221  Q
    |||| ||||    
T  17628038 atttagaaa 17628030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 32151176 - 32151405
Alignment:
Q  13 aatattagcatacacttgatcacaaccccttaaattgacctccctcggttgtgtacagtttttcatcacatacttcactcccttcactgtgacaccttta 112  Q
    ||||| ||||| |||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||| |||||| |||||| ||||||||  ||||    
T  32151176 aatatcagcatgcacttgatcacaaccccttaaattgatctccctcagttgtatacagtttttcctcacatgcttcacccccttctctgtgacatattta 32151275  T
Q  113 caaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctcca 212  Q
    ||| |  ||| |||||||||||||||||||| ||||||||||||||| |||| ||||| || ||||||||  ||||||  ||||||| | || |||||||    
T  32151276 caagacaccaataacagttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctcca 32151375  T
Q  213 attttgaaacatcaaagttcattccacgca 242  Q
      || ||||| || ||||||||||||||||    
T  32151376 gattggaaacttcgaagttcattccacgca 32151405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 329
Target Start/End: Complemental strand, 18315479 - 18315181
Alignment:
Q  31 atcacaaccccttaaattgacctccctcggttgtgtacagtttttcatcacatacttcactcccttcactgtgacacctttacaaaattccagtaacagt 130  Q
    |||||||||| ||| ||||| |||  || ||||||| |||||||  | |||||||||  |||| ||| |||||||| |   |||   ||||| |||||||    
T  18315479 atcacaacccattatattgagctctatcagttgtgtgcagttttctaccacatacttttctcctttctctgtgacatcacaacagcgttccaataacagt 18315380  T
Q  131 tgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagt 230  Q
    |||||||||| || ||||||||||||||| |||| |||||||| |||||||||| |||||||||||||| |||| ||||||| ||| | ||| | |||||    
T  18315379 tgcaaaagcctacgacaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagt 18315280  T
Q  231 tcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttgaataacaccttcgtcagatatgt 329  Q
    |||||||||| |  |||| || | ||  || |||||||||||| |||||||||| | |||  || | ||||||||||  || |||||| |||| |||||    
T  18315279 tcattccacgtagcttcattcttgaatcacgagctaagttcaactgtctaatctcagaacaacttcgtaaaacttgacaaataccttcttcaggtatgt 18315181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 303
Target Start/End: Complemental strand, 34936278 - 34936097
Alignment:
Q  122 agtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaa 221  Q
    ||||| |||||||||||||||| ||||||||||| |||  ||| ||||| |||||||||||||||||||| |||||||  ||| ||||| | ||||| ||    
T  34936278 agtaatagttgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacctctagttttggaa 34936179  T
Q  222 catcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaac 303  Q
    |||||||| ||||||   | |  ||||||  | ||||| | || |||| |||||||||||| | ||||| ||||||||||||    
T  34936178 catcaaagatcattctgtgaaggttcacttttgaacaatcggccaagtacaaatgtctaatgtcacaacatctccttaaaac 34936097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 44 - 326
Target Start/End: Complemental strand, 28246486 - 28246206
Alignment:
Q  44 aaattgacctccctcggttgtgtacagtttttcatcacatacttcactcccttcactgtgacacctttacaaaattccagtaacagttgcaaaagcccac 143  Q
    ||||||||||| ||| ||||||| || ||||  | ||||| | ||||||  ||  |||||||||||| ||||||||  ||| |||||||||||||||| |    
T  28246486 aaattgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcatttgtctgtgacaccttcacaaaatttaagtgacagttgcaaaagcccgc 28246387  T
Q  144 aacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattccacgcaa 243  Q
     |||||||||||||||   || ||||| |||||  ||||||||||||  |||||||  ||| ||||||| ||| | ||| |||||||||| |  | | |     
T  28246386 tacaactctttgagatccaatagagtgatttat--tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtatgtag 28246289  T
Q  244 attcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttgaataacaccttcgtcagata 326  Q
     |||| || | |||||| || ||| |||||||||||||| ||||||| | || ||||||| |||| || |||||| |||||||    
T  28246288 cttcagtcttgaacaacgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagata 28246206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 27922456 - 27922605
Alignment:
Q  86 ttcactcccttcactgtgacacctttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactc 185  Q
    ||||||||||||  ||||| | | ||||||  ||| ||| ||| || ||||||||||||||||||||||||||| | ||  ||||||| |||||||||      
T  27922456 ttcactcccttctttgtgaaatcattacaattttcaagtgacaatttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaacat 27922555  T
Q  186 ttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcatt 235  Q
    |||||| ||||||| |||| ||||||||||| | ||| ||||||||||||    
T  27922556 ttgtatatgacaagttcaacacctccaatttgggaacttcaaagttcatt 27922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 17636526 - 17636402
Alignment:
Q  112 acaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctcc 211  Q
    |||| |||| ||| ||| ||||||||| | |  ||||||||||||||| ||||  | ||||| ||| ||||||| ||| ||||||||| |||| ||||||    
T  17636526 acaatattcaagtgacaattgcaaaagtctaagacaactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctcc 17636427  T
Q  212 aattttgaaacatcaaagttcattc 236  Q
    ||||| | ||| |||||||||||||    
T  17636426 aatttgggaacttcaaagttcattc 17636402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 21235542 - 21235659
Alignment:
Q  122 agtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaa 221  Q
    |||||||||||||||||||  | ||| |||||||| || | || |||| |||  | |||||||| ||||| ||||||| |||| ||||||| ||| | ||    
T  21235542 agtaacagttgcaaaagcctgcgacagctctttgaaatcaaatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaa 21235641  T
Q  222 catcaaagttcattccac 239  Q
    | |||||||||| |||||    
T  21235642 cttcaaagttcactccac 21235659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 44736524 - 44736573
Alignment:
Q  127 cagttgcaaaagcccacaacaactctttgagattacatggagtgctttat 176  Q
    ||||| ||||||||||||||||||||||||||| |||  ||||| |||||    
T  44736524 cagttacaaaagcccacaacaactctttgagatcacaatgagtgttttat 44736573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 130 - 303
Target Start/End: Complemental strand, 51121000 - 51120827
Alignment:
Q  130 ttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaag 229  Q
    |||||||||||||| ||||||||||||||||||||  |||  || |||||||||||||||||| |||||| |||| |||||||||||   ||| ||||||    
T  51121000 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 51120901  T
Q  230 ttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaac 303  Q
    ||||||||| |||  ||||||| | ||||||| |  |||||||| |||||||| ||||||| ||||| ||||||    
T  51120900 ttcattccatgcagtttcactcttgaacaaccggtgaagttcaagtgtctaatgttacaacatctccataaaac 51120827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 191
Target Start/End: Complemental strand, 514940 - 514774
Alignment:
Q  25 cacttgatcacaaccccttaaattgacctccctcggttgtgtacagtttttcatcacatacttcactcccttcactgtgacacctttacaaaattccagt 124  Q
    ||||| || |||||| |||||||||| ||| ||| || |||| |||||||||| ||||| |||||||||| || |||||| ||||| ||||  || ||||    
T  514940 cactttattacaacctcttaaattgatctctctcagtcgtgtgcagtttttcaccacatgcttcactcccgtctctgtgataccttcacaattttgcagt 514841  T
Q  125 aacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtat 191  Q
    || ||||||||||||||||| |||||||| ||||| ||||| ||||||| ||| || ||||||||||    
T  514840 aatagttgcaaaagcccacagcaactcttcgagatcacatgaagtgcttcatcgtcgactcttgtat 514774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 112 - 307
Target Start/End: Complemental strand, 13470857 - 13470662
Alignment:
Q  112 acaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctcc 211  Q
    ||||| ||| ||||| ||||||||||||||||||||| |||||||||| | || ||||| |||||||| |||  |||||| ||||||| |||| ||||||    
T  13470857 acaaagttcaagtaatagttgcaaaagcccacaacaattctttgagatcatatagagtgttttatcattaacctttgtatttgacaagttcaacacctcc 13470758  T
Q  212 aattttgaaacatcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttga 307  Q
    |  || | |||| |||||||||||||| | |  ||||||  |  ||||   |||||||||||||| ||||||||||||| | ||||||||||||||    
T  13470757 agattgggaacaacaaagttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatccttaaaacttga 13470662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 79 - 307
Target Start/End: Complemental strand, 51113939 - 51113711
Alignment:
Q  79 cacatacttcactcccttcactgtgacacctttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatca 178  Q
    ||||| ||||||||||||| ||||||||   | ||||  || ||||||||||||||||||||||||||||||||| ||||| |||| ||||| || ||||    
T  51113939 cacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactcttcgagatcacatagagtgtttcatca 51113840  T
Q  179 tcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtc 278  Q
    |||||  |||||| |||||||   || ||||||| ||| | | | ||||||||||||||| | |  |||| |  | ||||   |||||| |||||||| |    
T  51113839 tcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttcagttttgaacagtaagctaatttcaaatgcc 51113740  T
Q  279 taatcttacaacgtctccttaaaacttga 307  Q
    |||| ||||||| |||| |||||||||||    
T  51113739 taattttacaacatctctttaaaacttga 51113711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 118 - 305
Target Start/End: Complemental strand, 51764559 - 51764372
Alignment:
Q  118 ttccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaatttt 217  Q
    ||||||||| |||||||||||||| |||||| ||||||||||  ||| ||||| ||||||||||||| |||||  |||||||   || |||||||  ||     
T  51764559 ttccagtaatagttgcaaaagcccgcaacaattctttgagatcgcatagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttc 51764460  T
Q  218 gaaacatcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaactt 305  Q
    | |||  |||||||||||||| | |  ||||||| | ||||  | | || ||||||||| ||||||||| ||| ||||||||||||||    
T  51764459 ggaactgcaaagttcattccaagtagcttcactcttgaacattcggataggttcaaatgcctaatcttagaacatctccttaaaactt 51764372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 233
Target Start/End: Original strand, 1657217 - 1657346
Alignment:
Q  104 acacctttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctca 203  Q
    ||||||| ||||||||  ||| |||||||||||||||| |  ||||||||||||||   || ||||| | |||  ||||||||||||  |||||||  ||    
T  1657217 acaccttcacaaaatttaagtgacagttgcaaaagcccgctgcaactctttgagatccaatagagtgatatattgtcaactcttgtaaatgacaagtcca 1657316  T
Q  204 atacctccaattttgaaacatcaaagttca 233  Q
    | ||||||| ||| | ||| ||||||||||    
T  1657317 acacctccagtttgggaacttcaaagttca 1657346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 27005859 - 27005797
Alignment:
Q  150 tctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctcca 212  Q
    |||||||||||||||  |||| | ||| ||||| |||||||||||||||| |||| |||||||    
T  27005859 tctttgagattacataaagtgttgtattatcaattcttgtatgtgacaagttcaagacctcca 27005797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 1657374 - 1657438
Alignment:
Q  265 taagttcaaatgtctaatcttacaacgtctccttaaaacttgaataacaccttcgtcagatatgt 329  Q
    ||| |||||||||||||| ||||||| | || ||||||| |||| || |||||| ||||||||||    
T  1657374 taaattcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagatatgt 1657438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 99 - 326
Target Start/End: Complemental strand, 11936413 - 11936186
Alignment:
Q  99 ctgtgacacctttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaa 198  Q
    |||||||||||| ||||||||  ||| |||||||||||||||||| |||||||||||||||   || ||||| |||||| ||||||||||||  ||||||    
T  11936413 ctgtgacaccttcacaaaatttaagtgacagttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaa 11936314  T
Q  199 gctcaatacctccaattttgaaacatcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctcctt 298  Q
    |  ||| ||||||| ||| | ||| |||||||||| |  ||| |  |||| || | |||| | || ||| |||||||||||||| ||||||| | || ||    
T  11936313 gtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcatt 11936214  T
Q  299 aaaacttgaataacaccttcgtcagata 326  Q
    ||||| |||| || |||||| |||||||    
T  11936213 aaaacatgaacaataccttcttcagata 11936186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 99 - 326
Target Start/End: Complemental strand, 11948393 - 11948166
Alignment:
Q  99 ctgtgacacctttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaa 198  Q
    |||||||||||| ||||||||  ||| |||||||||||||||||| |||||||||||||||   || ||||| |||||| ||||||||||||  ||||||    
T  11948393 ctgtgacaccttcacaaaatttaagtgacagttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaa 11948294  T
Q  199 gctcaatacctccaattttgaaacatcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctcctt 298  Q
    |  ||| ||||||| ||| | ||| |||||||||| |  ||| |  |||| || | |||| | || ||| |||||||||||||| ||||||| | || ||    
T  11948293 gtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcatt 11948194  T
Q  299 aaaacttgaataacaccttcgtcagata 326  Q
    ||||| |||| || |||||| |||||||    
T  11948193 aaaacatgaacaataccttcttcagata 11948166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 86 - 303
Target Start/End: Complemental strand, 6585388 - 6585171
Alignment:
Q  86 ttcactcccttcactgtgacacctttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactc 185  Q
    |||| ||||||| ||||||||  || ||||  || |||||| |||| ||||||| || |||||||||||||||| |||| ||||| || |||||||||      
T  6585388 ttcagtcccttctctgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatcatcaacct 6585289  T
Q  186 ttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatctt 285  Q
    |||||| ||||||| ||||||||||||| |  | |||   |||||| |||||| | |  ||||||| | |||| ||||  ||||||||||| ||||| ||    
T  6585288 ttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagcttcactcttgaacacccagtaaagttcaaatgcctaatatt 6585189  T
Q  286 acaacgtctccttaaaac 303  Q
    | ||| ||||||||||||    
T  6585188 aaaacatctccttaaaac 6585171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 128 - 307
Target Start/End: Original strand, 6432151 - 6432330
Alignment:
Q  128 agttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaa 227  Q
    ||||||| ||||||||||||| ||||| |||| ||||  |||| || ||||||||| ||||||| ||||||| |||| |||| ||  || | ||| ||||    
T  6432151 agttgcagaagcccacaacaattctttaagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaa 6432250  T
Q  228 agttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttga 307  Q
    ||||||||||| | |  ||||||  || ||||   ||||||||||||||| |||  ||||||| ||||||||||||||||    
T  6432251 agttcattccatgtagcttcacttttatacaataggctaagttcaaatgtttaagtttacaacatctccttaaaacttga 6432330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 121 - 307
Target Start/End: Original strand, 7119140 - 7119326
Alignment:
Q  121 cagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaa 220  Q
    |||||| |||| ||||||||| |||||| |||| ||||| |||||||||| || |||||||||  | |||| ||||||| |||| |||||||  |    |    
T  7119140 cagtaatagttccaaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggtga 7119239  T
Q  221 acatcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttga 307  Q
    ||| |||||||||||||| | |  ||||||| | ||||    ||||||||||||||| |||||||| ||| ||||||||||||||||    
T  7119240 acaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttga 7119326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 121 - 307
Target Start/End: Original strand, 7131618 - 7131804
Alignment:
Q  121 cagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaa 220  Q
    |||||| |||| ||||||||| |||||| |||| ||||| |||||||||| || |||||||||  | |||| ||||||| |||| |||||||  |    |    
T  7131618 cagtaatagttccaaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggcga 7131717  T
Q  221 acatcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttga 307  Q
    ||| |||||||||||||| | |  ||||||| | ||||    ||||||||||||||| |||||||| ||| ||||||||||||||||    
T  7131718 acaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttga 7131804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 307
Target Start/End: Original strand, 6402850 - 6403029
Alignment:
Q  128 agttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaa 227  Q
    |||| ||||||||||| |||| |||||||||| |||| ||||| || |||||||||  | |||| ||||||| |||| || || | ||  | |||  |||    
T  6402850 agtttcaaaagcccactacaattctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaa 6402949  T
Q  228 agttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttga 307  Q
    |||| |||||| | |  ||||||| | |||| |||| |||||||||||| ||||| ||||||| ||||||||||||||||    
T  6402950 agtttattccaagtagcttcactcttgaacacccagttaagttcaaatgcctaatgttacaacatctccttaaaacttga 6403029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 307
Target Start/End: Original strand, 6415940 - 6416135
Alignment:
Q  112 acaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctcc 211  Q
    ||||||||| ||||| |||||||||||||| | |||| |||||||||| |||| ||| | |||||||| |||  |||||| ||||||| |||| ||||||    
T  6415940 acaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctcc 6416039  T
Q  212 aattttgaaacatcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttga 307  Q
    |  || | |||  |||||| ||||||| | |  ||||||  |  ||||   |||||||||||||| | ||||||||||| | || |||||||||||    
T  6416040 aggttgggaactacaaagtccattccatgtagcttcacttttttacaaaaggctaagttcaaatgcccaatcttacaacatatctttaaaacttga 6416135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 6423201 - 6423291
Alignment:
Q  122 agtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctcca 212  Q
    ||||| |||||||||| |||||||||||||||||||||  ||| ||||| ||||||   ||||||||||| ||||||| |||| |||||||    
T  6423201 agtaatagttgcaaaatcccacaacaactctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctcca 6423291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 130 - 307
Target Start/End: Original strand, 6394856 - 6395033
Alignment:
Q  130 ttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaag 229  Q
    ||||||||||||||||||| |||||||||| |||   || | || ||||||||| ||||||| ||||||| |||| |||||||  |  | |||  |||||    
T  6394856 ttgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaag 6394955  T
Q  230 ttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttga 307  Q
    ||||||||| | |  ||||||  | ||||   |||||||||||||||| ||| |||||||| | || |||||||||||    
T  6394956 ttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagcttacaacatttctttaaaacttga 6395033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 307
Target Start/End: Complemental strand, 6594715 - 6594536
Alignment:
Q  128 agttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaa 227  Q
    ||||| ||||||||||||||| |||||||||| ||| | ||||  | |||||||||   ||||| |||||||  ||| ||||||| ||| | |||   ||    
T  6594715 agttgtaaaagcccacaacaattctttgagatcacacgtagtgtctcatcatcaacctctgtatttgacaagtacaacacctccagtttgggaactaaaa 6594616  T
Q  228 agttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttga 307  Q
    |||| |||||| | |  ||||||| | |||| || | ||||| ||||||| |||||||| ||| ||||||||||||||||    
T  6594615 agtttattccatgtagcttcactcttgaacacccggataagtacaaatgtgtaatcttataacatctccttaaaacttga 6594536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 307
Target Start/End: Original strand, 14820617 - 14820862
Alignment:
Q  62 tgtgtacagtttttcatcacatacttcactcccttcactgtgacacctttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagatta 161  Q
    ||||| |||||||| | |||||  ||||| |||||| |||||||| | |||||   ||| ||||| | | ||||||||||||||||| |||| ||||| |    
T  14820617 tgtgtgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagcccacaacaattcttggagatca 14820716  T
Q  162 catggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattccacgcaaattcactcctaaacaacc 261  Q
     ||  |||| || || ||||||  |||||| ||| ||| |||| ||||| || || | |||  ||||||| |||||| | |  ||||||||| |||||      
T  14820717 tataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgggaactgcaaagttaattccatgtagtttcactcctgaacaaaa 14820816  T
Q  262 agctaagttcaaatgtctaatcttacaacgtctccttaaaacttga 307  Q
      |||||||||||||| ||| |||||||| | |||||||| |||||    
T  14820817 ttctaagttcaaatgtttaagcttacaacatttccttaaaccttga 14820862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 10579845 - 10579761
Alignment:
Q  128 agttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctcca 212  Q
    |||| |||||||| ||||||| ||||||||||   || ||||| ||||||||||||| |||||| ||||||| |||| |||||||    
T  10579845 agttccaaaagccgacaacaattctttgagatcgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacctcca 10579761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 238
Target Start/End: Original strand, 6409996 - 6410106
Alignment:
Q  128 agttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaa 227  Q
    ||||||||||||| ||||||| |||||||||| ||||  || | || ||||||||| ||||||| |||| || |||| |||| ||  || | ||| ||||    
T  6409996 agttgcaaaagccgacaacaattctttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaa 6410095  T
Q  228 agttcattcca 238  Q
    |||||||||||    
T  6410096 agttcattcca 6410106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 28935056 - 28935146
Alignment:
Q  145 acaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcatt 235  Q
    |||||||||||| || |||  |||||||| ||| ||||||||||||||||||||| |||| ||||| | ||  | ||||||||| ||||||    
T  28935056 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttcatt 28935146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 159
Target Start/End: Original strand, 6426459 - 6426532
Alignment:
Q  86 ttcactcccttcactgtgacacctttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagat 159  Q
    ||||| ||||||| ||||||||||||||||  ||| ||||| | |||||||| || ||||||| ||||||||||    
T  6426459 ttcacacccttcattgtgacacctttacaattttcaagtaataattgcaaaatccgacaacaattctttgagat 6426532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 303
Target Start/End: Complemental strand, 7994309 - 7994116
Alignment:
Q  110 ttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacct 209  Q
    ||||||| ||| ||||| ||||||||||| ||| ||||| |||||||||| ||||  |||| ||  |||| ||| ||||||| ||||| | |||| ||||    
T  7994309 ttacaaagttcaagtaatagttgcaaaagtccagaacaattctttgagatcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacct 7994210  T
Q  210 ccaattttgaaacatcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaac 303  Q
    | |  || | |||  |||||||||||||  | |  ||||||| |  |||| | |||| ||||||||| || |||||||||| | ||||||||||    
T  7994209 ctagcttcggaactacaaagttcattcctagtagcttcactcttgtacaatcggctatgttcaaatgcctgatcttacaacatttccttaaaac 7994116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 329
Target Start/End: Original strand, 9411476 - 9411543
Alignment:
Q  262 agctaagttcaaatgtctaatcttacaacgtctccttaaaacttgaataacaccttcgtcagatatgt 329  Q
    ||||| ||||||||||||||| |||| || |||||||||||| || | || |||||||| ||||||||    
T  9411476 agctaggttcaaatgtctaatgttaccacatctccttaaaacctgcaaaataccttcgttagatatgt 9411543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 19632422 - 19632460
Alignment:
Q  121 cagtaacagttgcaaaagcccacaacaactctttgagat 159  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  19632422 cagtaagagttgcaaaagcccacaacaattctttgagat 19632460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 8913955 - 8913914
Alignment:
Q  266 aagttcaaatgtctaatcttacaacgtctccttaaaacttga 307  Q
    |||||||||||| |||||||||||| ||| ||||||||||||    
T  8913955 aagttcaaatgtttaatcttacaacatcttcttaaaacttga 8913914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 12102274 - 12102366
Alignment:
Q  146 caactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattcca 238  Q
    ||||||||||| || | || |||| |||  | |||||||| ||||||||||||| |||| ||||||| ||| | ||| |||||||||| ||||    
T  12102274 caactctttgaaatcagatagagttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttgggaacttcaaagttcaatcca 12102366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 80 - 235
Target Start/End: Original strand, 32267417 - 32267572
Alignment:
Q  80 acatacttcactcccttcactgtgacacctttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcat 179  Q
    |||| |||||||||||||  ||||| | | ||||||  ||  ||| ||| || ||||||||||||||||||||||||||| | ||  ||||||| |||||    
T  32267417 acatgcttcactcccttctttgtgatatcattacaatttttaagtgacaatttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcat 32267516  T
Q  180 caactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcatt 235  Q
    ||||| |||| ||||||||| |||||||||||||||| | ||| ||||||||||||    
T  32267517 caactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatt 32267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 122 - 328
Target Start/End: Complemental strand, 41889669 - 41889463
Alignment:
Q  122 agtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaa 221  Q
    ||||||| || | ||||||| |||||||||||||||||   ||  |||| || |||||||||| |||||| ||| ||| |||| ||||||||||| | ||    
T  41889669 agtaacaatttcgaaagcccgcaacaactctttgagatcttataaagtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaa 41889570  T
Q  222 catcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttgaataacaccttcgtc 321  Q
    | | |||||||||| || | |  ||||||  | |||| || | ||||||||||| |||||| ||||||| | |||||||||||||| ||| |||||| ||    
T  41889569 ctttaaagttcatttcaagtagcttcactattgaacatccggataagttcaaatatctaatgttacaacatatccttaaaacttgagtaataccttcatc 41889470  T
Q  322 agatatg 328  Q
    | |||||    
T  41889469 aaatatg 41889463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 230
Target Start/End: Complemental strand, 41901707 - 41901542
Alignment:
Q  65 gtacagtttttcatcacatacttcactcccttcactgtgacacctttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacat 164  Q
    ||||||||||  | ||||| |||||||||||||  ||||||| | ||||||  ||  ||| ||| || |||||| |||||||||||||||||||| | ||    
T  41901707 gtacagttttctaccacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaatttcaaaagtccacaacaactctttgagatcatat 41901608  T
Q  165 ggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagt 230  Q
      ||||||| |||||||||| |||||| ||||||| |||| ||||||| ||| | ||| |||||||    
T  41901607 aaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 37937877 - 37937948
Alignment:
Q  128 agttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaag 199  Q
    |||||||||||||||| |||  ||||||||||||||| ||||| || |||||||| ||||||||||| ||||    
T  37937877 agttgcaaaagcccacgacacatctttgagattacatagagtgtttgatcatcaattcttgtatgtgtcaag 37937948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 199
Target Start/End: Complemental strand, 38267725 - 38267594
Alignment:
Q  68 cagtttttcatcacatacttcactcccttcactgtgacacctttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatgga 167  Q
    |||||||| | ||||| | ||||||||||| | ||||||    |||||| || |||  |||||| |||||||||||  ||  ||||||||||||||| ||    
T  38267725 cagtttttgaccacatgcatcactcccttctcggtgacattcgtacaaagttgcagcgacagtttcaaaagcccacggcacgtctttgagattacataga 38267626  T
Q  168 gtgctttatcatcaactcttgtatgtgacaag 199  Q
    |||  | |||||||||||||||||||| ||||    
T  38267625 gtgtgtcatcatcaactcttgtatgtgtcaag 38267594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 328
Target Start/End: Original strand, 32267599 - 32267662
Alignment:
Q  265 taagttcaaatgtctaatcttacaacgtctccttaaaacttgaataacaccttcgtcagatatg 328  Q
    |||||||||||||||||| ||||||| | ||||||||| |||||  | |||||| |||||||||    
T  32267599 taagttcaaatgtctaatgttacaacatatccttaaaaattgaacgataccttcttcagatatg 32267662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 41901510 - 41901447
Alignment:
Q  265 taagttcaaatgtctaatcttacaacgtctccttaaaacttgaataacaccttcgtcagatatg 328  Q
    |||||||||||||||||| |||||||   ||||||||||||||| || |||||| ||| |||||    
T  41901510 taagttcaaatgtctaatgttacaacacatccttaaaacttgaacaataccttcttcaaatatg 41901447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 180
Target Start/End: Original strand, 12845542 - 12845635
Alignment:
Q  87 tcactcccttcactgtgacacctttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatc 180  Q
    ||||||||||| |||| ||| | ||||||  ||||||   || |||||| || ||||||||||||||||||||| |||  ||||||| ||||||    
T  12845542 tcactcccttctctgtaacatcattacaattttccaggtccaattgcaatagaccacaacaactctttgagattgcatatagtgcttcatcatc 12845635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 128 - 303
Target Start/End: Complemental strand, 45245194 - 45245019
Alignment:
Q  128 agttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaa 227  Q
    |||||||||||||||| ||||||||||||||| |||||||||| || |||||||||  |||| | ||||||  |||| ||||| | ||||| ||| ||||    
T  45245194 agttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaa 45245095  T
Q  228 agttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaac 303  Q
    |||| |||||||| || | || || | |||| | | ||||||| ||||| ||||| ||||||| ||||||||||||    
T  45245094 agtttattccacgtaattccagtcttgaacagcaaactaagtttaaatgcctaatgttacaacatctccttaaaac 45245019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 118 - 329
Target Start/End: Complemental strand, 1037783 - 1037572
Alignment:
Q  118 ttccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaatttt 217  Q
    |||||| |||||||| ||||||||||||||| |||||||||| | || ||||| || ||||||||| | ||||||||||||| | || ||||| ||||      
T  1037783 ttccagaaacagttgtaaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattca 1037684  T
Q  218 gaaacatcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttgaataacacctt 317  Q
    | ||| | |||||| |||| | | |  ||||||| | || |    ||||| ||||||||||||| |||||||| |||||||||||||| |  || |||||    
T  1037683 ggaactttaaagtttattctaagtagtttcactcttgaatagtaggctaaattcaaatgtctaaccttacaacatctccttaaaacttcacaaatacctt 1037584  T
Q  318 cgtcagatatgt 329  Q
    | ||||||||||    
T  1037583 cttcagatatgt 1037572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 210
Target Start/End: Complemental strand, 32785886 - 32785799
Alignment:
Q  123 gtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctc 210  Q
    ||||||||| ||||||||||  | ||||  ||||||| ||||  ||||||| |||||||| |||||||||||||||| |||| |||||    
T  32785886 gtaacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctc 32785799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 112 - 307
Target Start/End: Complemental strand, 15092276 - 15092081
Alignment:
Q  112 acaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctcc 211  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||||||||  ||| ||||| |||||||| |||  |||| | ||||||  |||| ||||||    
T  15092276 acaaaattcaagtaatagttgcaaaagcccacaacaattctttgagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctcc 15092177  T
Q  212 aattttgaaacatcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttga 307  Q
    |  |  | |||  |||||||||||||| | |  ||||| | |||||| |||| ||||||||||||| ||| |||| ||| | ||||||||||||||    
T  15092176 agctcgggaactgcaaagttcattccatgtagtttcacacttaaacatccagttaagttcaaatgtttaagcttataacatttccttaaaacttga 15092081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 166 - 324
Target Start/End: Original strand, 7977606 - 7977764
Alignment:
Q  166 gagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattccacgcaaattcactcctaaacaaccagct 265  Q
    ||||| ||||||||||||| |||||||||||||| ||||  |||| | |||  |||| || || ||||||||||| | |||||| | | ||||||  |||    
T  7977606 gagtgttttatcatcaactgttgtatgtgacaagttcaaagcctcgagtttgcaaacgtcgaatttcattccacgtagattcacccttgaacaacaggct 7977705  T
Q  266 aagttcaaatgtctaatcttacaacgtctccttaaaacttgaataacaccttcgtcaga 324  Q
    | ||| ||||||||||| ||||||| ||||||||||||||||  || |||||| |||||    
T  7977706 aggtttaaatgtctaatgttacaacatctccttaaaacttgaccaataccttcttcaga 7977764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 122 - 307
Target Start/End: Original strand, 10614577 - 10614762
Alignment:
Q  122 agtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaa 221  Q
    ||||| |||||||||||||||| |||  |||| ||||| |||| ||||| |||||||| |||  | |||| ||||||| |||| |||||||  || | ||    
T  10614577 agtaatagttgcaaaagcccactacagttcttcgagatcacatagagtgttttatcattaaccttcgtatttgacaagttcaacacctccagattgggaa 10614676  T
Q  222 catcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttga 307  Q
    || ||| |||||||||| | |  ||||||  |  ||||   |||||||||||||| ||||||||||||| | ||||||||||||||    
T  10614677 caacaacgttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatccttaaaacttga 10614762  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 29659022 - 29658929
Alignment:
Q  111 tacaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaa 204  Q
    ||||| |||||||||||| ||||||||| |||||||||||| |||| || | |||||||||||||||||||||| | |||| ||||||| ||||    
T  29659022 tacaacattccagtaacaattgcaaaaggccacaacaactcgttgatatgatatggagtgctttatcatcaactttggtatatgacaagttcaa 29658929  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 204
Target Start/End: Complemental strand, 29719116 - 29718956
Alignment:
Q  44 aaattgacctccctcggttgtgtacagtttttcatcacatacttcactcccttcactgtgacacctttacaaaattccagtaacagttgcaaaagcccac 143  Q
    ||||||| ||||||| ||||  | |||||||  | |||||  |||||||| ||| ||||||||    |||||  ||||||||||| ||||||||| ||||    
T  29719116 aaattgatctccctcagttgcttgcagttttgaaccacatgtttcactccattctctgtgacattcatacaactttccagtaacaattgcaaaaggccac 29719017  T
Q  144 aacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaa 204  Q
    |||||||| |||| || | |||||||| ||||||||||||  | |||| ||||||| ||||    
T  29719016 aacaactcgttgatatgatatggagtgatttatcatcaacgttggtatatgacaagttcaa 29718956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 204
Target Start/End: Original strand, 7554471 - 7554554
Alignment:
Q  121 cagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaa 204  Q
    |||||||||||| ||||| |||| ||||||||||||||| | || |||||||| ||||||||| ||||||| ||| ||| ||||    
T  7554471 cagtaacagttgtaaaagtccaccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatatgataagttcaa 7554554  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 52082582 - 52082678
Alignment:
Q  139 cccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcatt 235  Q
    ||||||||||||||||||||| ||||  | || || |||||||| | |||| | ||||||| |||| ||||||||||| ||||| | ||||||||||    
T  52082582 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 52082678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 307
Target Start/End: Complemental strand, 19468603 - 19468429
Alignment:
Q  133 caaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttc 232  Q
    |||||| ||||||||  |||||||||| ||||  |||| || |||||||||  |||||| ||||||  |||| |||||||  || | |||  ||||||||    
T  19468603 caaaagtccacaacagttctttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttc 19468504  T
Q  233 attccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttga 307  Q
    | |||| | | |||||||| | ||||    |||||||| ||||| ||||| ||| |||  |||||||||||||||    
T  19468503 actccaagtagattcactcttgaacagtgggctaagtttaaatgcctaatattagaacacctccttaaaacttga 19468429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 118 - 329
Target Start/End: Complemental strand, 743 - 532
Alignment:
Q  118 ttccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtgctttatcatcaactcttgtatgtgacaagctcaatacctccaatttt 217  Q
    ||||||||||||||| || |||||||||||| |||| ||||| | || ||||| || |||||| || ||||||||||||||| | || ||||| ||||      
T  743 ttccagtaacagttgtaatagcccacaacaattcttcgagatcatatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctctaattca 644  T
Q  218 gaaacatcaaagttcattccacgcaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacgtctccttaaaacttgaataacacctt 317  Q
    | ||| | |||||| |||| | | |  ||||||| | ||||    ||||| ||||||||||||  |||||||| |||||||| ||||| |  || |||||    
T  643 ggaactttaaagtttattctaagtagtttcactcttgaacagtaggctaaattcaaatgtctagccttacaacatctccttagaacttcacaaatacctt 544  T
Q  318 cgtcagatatgt 329  Q
    | ||||||||||    
T  543 cttcagatatgt 532  T

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Target: scaffold0807 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 1438 - 1394
Alignment:
Q  263 gctaagttcaaatgtctaatcttacaacgtctccttaaaacttga 307  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||    
T  1438 gctaagttcaaatgtctaatcttataacatctccttaaaacttga 1394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 88943 - 88980
Alignment:
Q  265 taagttcaaatgtctaatcttacaacgtctccttaaaa 302  Q
    |||||||||||||||||||||||||| |||||||||||    
T  88943 taagttcaaatgtctaatcttacaacatctccttaaaa 88980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 39164 - 39210
Alignment:
Q  118 ttccagtaacagttgcaaaagcccacaacaactctttgagattacat 164  Q
    |||||||| ||| ||||||||||||| ||||||||||||||| ||||    
T  39164 ttccagtatcaggtgcaaaagcccactacaactctttgagatcacat 39210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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