View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19539_low_21 (Length: 328)
Name: NF19539_low_21
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19539_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 21 - 318
Target Start/End: Complemental strand, 40742306 - 40742015
Alignment:
| Q |
21 |
tcagcatcattgttgaattcacaattgaaagattgttcattcttcttcaatctcttggtgtcactctcaccctcttcaacaactaaatcttcacctacaa |
120 |
Q |
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| T |
40742306 |
tcagcatcattgttgaattcacaattgaaagattgttcattcttcttcaatctcttggtctcactctcaccctcttcaacagctaaatcttcacctacaa |
40742207 |
T |
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| Q |
121 |
atacaatactactattgctatccacttccttatccttgctttcttcattggttgatgatttccttttcaaactactttcaacagagtcaattgatacatg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40742206 |
atacaatactactattgctatccacttccttatccttgctttcttcattggttgatgatttccttttcaaactacttttaacagagtcaattgatacatg |
40742107 |
T |
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| Q |
221 |
attnnnnnnnnnnnnnnnnnnacaatattgctttgcaatcatcactacatctaacatacaatttttatcactcaacagaacagaatcatccacctttg |
318 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40742106 |
att------ttcttcttcttcacaatattgctttgcaatcatcactacatctaacatacaatttttatcactcaacagaacagaatcatccacctttg |
40742015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 10326160 - 10326235
Alignment:
| Q |
242 |
acaatattgctttgcaatcatcactacatctaacatacaatttttatcactcaacagaacagaatcatccaccttt |
317 |
Q |
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||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| | ||||||||||||||||| |
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| T |
10326160 |
acaatattgctttgcaatcataactacatgtaacatacaatttttatcaatcaacaaatcagaatcatccaccttt |
10326235 |
T |
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