View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19539_low_22 (Length: 323)
Name: NF19539_low_22
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19539_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 269890 - 270161
Alignment:
| Q |
18 |
ccaatatatatagtcattcgacattgtctttgcaaggctagcgaacctttgtgaagggaaattctaaaatttgaagttgcagaatgtgtattcatatgta |
117 |
Q |
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| T |
269890 |
ccaatatatatagtcattcgacattgtctttgcaaggctagcgaacctttgtgaagggaaactctaaaatttgaagttgcagaatgtgtatttatatgt- |
269988 |
T |
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| Q |
118 |
aaaagccggtggatccaagcttagtaagtgcgcctagagagttttgtataagggattcatcatataggtttaagaattt--------taaattgtatgag |
209 |
Q |
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| T |
269989 |
aaaaaaaggtgg-------cat---------gcctaaagagttttgtataagggattcatcatataggtttaagaatttgttttaatttaattgtatgag |
270072 |
T |
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| Q |
210 |
ccgttgtaaagttgaacacatgtaaaatattcaaattgaggagtattagtgaaatgaagttaccttgttatcaaattccttgatttcac |
298 |
Q |
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| T |
270073 |
ccgttgtaaagttgaacacatgtaaaatattcaaattgaggagtattagtgaaatgaagttaccttgttatcaaattccttgatttcac |
270161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 299
Target Start/End: Complemental strand, 49250427 - 49250340
Alignment:
| Q |
212 |
gttgtaaagttgaacacatgtaaaatattcaaattgaggagtattagtgaaatgaagttaccttgttatcaaattcc-ttgatttcaca |
299 |
Q |
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| T |
49250427 |
gttgtaaagttgaccacatgtaaaaaattcaaattgaagagtatga-tgaaatgaagttactttgttatcaaattcctttgatttcaca |
49250340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 14945492 - 14945436
Alignment:
| Q |
230 |
tgtaaaatattcaaattgaggagtattagtgaaatgaagttaccttgttatcaaatt |
286 |
Q |
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| T |
14945492 |
tgtaaaatattcaaattgaagagtatcgatgaaatgaagttactttgtattcaaatt |
14945436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 8791021 - 8791088
Alignment:
| Q |
212 |
gttgtaaagttgaacacatgtaaaatattcaaattgaggagtattagtgaaatgaagttaccttgtta |
279 |
Q |
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| T |
8791021 |
gttgtaaagtttaccacatataaaatattcaaattgaggagtatcaatcaaatgaaattactttgtta |
8791088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 6205772 - 6205814
Alignment:
| Q |
212 |
gttgtaaagttgaacacatgtaaaatattcaaattgaggagta |
254 |
Q |
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| T |
6205772 |
gttgtaaagttgaccacatgtaaaacattcaaattgaagagta |
6205814 |
T |
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