View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19539_low_26 (Length: 292)
Name: NF19539_low_26
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19539_low_26 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 32795817 - 32796086
Alignment:
| Q |
1 |
aaacttgccatgttggacattttctctgacaaaatgataggctaaggctatatgtttcgtccgagagtgaaatacaggattagcgctaaggtgg-tagcc |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
32795817 |
aaacttgccatgttggacattttctctgacaaaatgataggctaaggctatatgtttcatccgagagtgaaatacaggattagcgctaagatgggtagca |
32795916 |
T |
|
| Q |
100 |
ccgaggttgtcacaatagatgactggattggttgttggagtgtggccaagttcagtgaatagggaaaggacccatagcagctcacttgccgtgtcagcca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32795917 |
ccgaggttgtcacaatagatgactggattggttgttggagtgtggccaagttcagtgaatagggaaaggacccatagcagctcacttgccgtgtcagcca |
32796016 |
T |
|
| Q |
200 |
aggctttatattctgcttctttgaaagatcgagcaacaaaacgttgttttcgagagctccaagagatggg |
269 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32796017 |
aggctttatattctgcttctttgaaagaccgagcaacaaaacgttgttttcaagagctccaagagatggg |
32796086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 19670512 - 19670239
Alignment:
| Q |
1 |
aaacttgccatgttggacattttctctgacaaaatgataggctaaggctatatgtttcgtccgagagtgaaatacaggattagcgctaaggtgg-tagcc |
99 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
19670512 |
aaacttgccatgttgaacattttctcagacaaaatgataggttaaggctatatgtttcatccgagagtgaaatacaggattaacactaaggtgggtagca |
19670413 |
T |
|
| Q |
100 |
ccgaggttgtcacaatagatgactggattggttgttggagtgtggccaagttcagtgaatagggaaaggacccatagcagctcacttgccgtgtcagcca |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19670412 |
ccgaggttgtcacaatagatgactggattggctgttggagtgtggccaagttcagtgaatagggaaaggacccatagcagctcacttgtcgtgtcagcca |
19670313 |
T |
|
| Q |
200 |
aggctttatattctgcttctttgaaagatcgagcaacaaaacgttgttttcgagagctccaagagatgggcgtg |
273 |
Q |
| |
|
|||||||||||| ||||| | || |||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
19670312 |
aggctttatattttgcttttgtggaagatcgagcaacagaacgttgttttcgagagctccatgagatgggcgtg |
19670239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 22827318 - 22827591
Alignment:
| Q |
1 |
aaacttgccatgttggacattttctctgacaaaatgataggctaaggctatatgtttcgtccgagagtgaaatacaggattagcgctaaggtgg-tagcc |
99 |
Q |
| |
|
||||||||||| ||| ||||||| || ||||||||| || | |||| ||||||||||| ||||||||||| ||||||||||||| ||||| ||| |||| |
|
|
| T |
22827318 |
aaacttgccattttgaacattttatcagacaaaatggtaagttaagactatatgtttcatccgagagtgagatacaggattagcactaagttgggtagca |
22827417 |
T |
|
| Q |
100 |
ccgaggttgtcacaatagatgactggattggttgttggagtgtggccaagttcagtgaatagggaaaggacccatagcagctcacttgccgtgtcagcca |
199 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
22827418 |
ccgaggttgtcacaataaatgactggattggttgttggagtgtggccaagttcattgaatagggaaaggacccatagcagcacacttgtcgtgtcagcca |
22827517 |
T |
|
| Q |
200 |
aggctttatattctgcttctttgaaagatcgagcaacaaaacgttgttttcgagagctccaagagatgggcgtg |
273 |
Q |
| |
|
|||||||||||||||||||| || |||| ||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
22827518 |
aggctttatattctgcttctatggaagagcgagcaacaaaacgttgtttttgacagctccaagagatgggcgtg |
22827591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 166; Significance: 7e-89; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 11678682 - 11678413
Alignment:
| Q |
1 |
aaacttgccatgttggacattttctctgacaaaatgataggctaaggctatatgtttcgtccgagagtgaaatacaggattagcgctaaggt-ggtagcc |
99 |
Q |
| |
|
||||||||||||||| ||||||| || |||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| | ||||||| |||||| |
|
|
| T |
11678682 |
aaacttgccatgttgaacattttttcggacaaaatgataggctaaggctatatatttcatccgagagtaaaatacaggattaacactaaggtaggtagca |
11678583 |
T |
|
| Q |
100 |
ccgaggttgtcacaatagatgactggattggttgttggagtgtggccaagttcagtgaatagggaaaggacccatagcagctcacttgccgtgtcagcca |
199 |
Q |
| |
|
|||||||| ||||||||||| |||| ||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||| | | ||||||| | |
|
|
| T |
11678582 |
tcgaggttgccacaatagatgtttggaatggctgttggagtgtggccaagttcagtgaataaggaaaggacccatatcagctcactcgtcatgtcagcta |
11678483 |
T |
|
| Q |
200 |
aggctttatattctgcttctttgaaagatcgagcaacaaaacgttgttttcgagagctccaagagatggg |
269 |
Q |
| |
|
|||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11678482 |
aggctttatactctgcttctgtggaagatcgagcaacaaaacgttgttttcgagagctccaagagatggg |
11678413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 8 - 269
Target Start/End: Original strand, 2922140 - 2922402
Alignment:
| Q |
8 |
ccatgttggacattttctctgacaaaatgataggctaaggctatatgtttcgtccgagagtgaaatacaggattagcgctaaggtgg-tagccccgaggt |
106 |
Q |
| |
|
|||| ||| |||||||||| ||||||||||||||||||||||||||||||| ||| | |||||||||| |||||||| ||||||||| |||| | ||||| |
|
|
| T |
2922140 |
ccattttgtacattttctcggacaaaatgataggctaaggctatatgtttcatccaaaagtgaaatactggattagcactaaggtgggtagcactgaggt |
2922239 |
T |
|
| Q |
107 |
tgtcacaatagatgactggattggttgttggagtgtggccaagttcagtgaatagggaaaggacccatagcagctcacttgccgtgtcagccaaggcttt |
206 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||| ||||||||| |||||||||||||||||||||| |||||||| |||||| |||||||||||| |
|
|
| T |
2922240 |
tgtcacaatagatgactggattggctgttggagggtgaccaagttcattgaatagggaaaggacccatagaagctcactctccgtgttagccaaggcttt |
2922339 |
T |
|
| Q |
207 |
atattctgcttctttgaaagatcgagcaacaaaacgttgttttcgagagctccaagagatggg |
269 |
Q |
| |
|
||||| ||||||| || |||| | ||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
2922340 |
atattttgcttctatggaagagcaagcaacagaacgttgttttcgagagctctaagagatggg |
2922402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 142 - 273
Target Start/End: Original strand, 27413719 - 27413850
Alignment:
| Q |
142 |
tggccaagttcagtgaatagggaaaggacccatagcagctcacttgccgtgtcagccaaggctttatattctgcttctttgaaagatcgagcaacaaaac |
241 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| | |||| ||||||||| ||| |
|
|
| T |
27413719 |
tggccaaatttagtgaatagggaaaggacccataacagctcactcgccgtgtcagccaaggctttatattctgcttctgtagaagagcgagcaacagaac |
27413818 |
T |
|
| Q |
242 |
gttgttttcgagagctccaagagatgggcgtg |
273 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |
|
|
| T |
27413819 |
attgttttagagagctccaagagatgggcgtg |
27413850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 27340893 - 27341043
Alignment:
| Q |
1 |
aaacttgccatgttggacattttctctgacaaaatgataggctaaggctatatgtttcgtccgagagtgaaatacaggattagcgctaaggtg-----gt |
95 |
Q |
| |
|
||||||||||| | | |||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| || |
|
|
| T |
27340893 |
aaacttgccatttcgaacattttctcggaaaaaatgataggctaaggctatatgtttcatccgagagtgaaatacagaattagcactaaggtgggtacgt |
27340992 |
T |
|
| Q |
96 |
agccccgaggttgtcacaatagatgactggattggttgttggagtgtggcc |
146 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
27340993 |
agcaccgaggttgtcacaatagatgactggattggatggtggagtgtggcc |
27341043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 27401633 - 27401783
Alignment:
| Q |
1 |
aaacttgccatgttggacattttctctgacaaaatgataggctaaggctatatgtttcgtccgagagtgaaatacaggattagcgctaaggtg-----gt |
95 |
Q |
| |
|
||||||||||| | | |||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| || |
|
|
| T |
27401633 |
aaacttgccatttcgaacattttctcggaaaaaatgataggctaaggctatatgtttcatccgagagtgaaatacagaattagcactaaggtgggtacgt |
27401732 |
T |
|
| Q |
96 |
agccccgaggttgtcacaatagatgactggattggttgttggagtgtggcc |
146 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
27401733 |
agcaccgaggttgtcacaatagatgactggattggatggtggagtgtggcc |
27401783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 142 - 273
Target Start/End: Complemental strand, 79406 - 79275
Alignment:
| Q |
142 |
tggccaagttcagtgaatagggaaaggacccatagcagctcacttgccgtgtcagccaaggctttatattctgcttctttgaaagatcgagcaacaaaac |
241 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| | |||| ||||||||| ||| |
|
|
| T |
79406 |
tggccaaatttagtgaatagggaaaggacccataacagctcactcgccgtgtcagccaaggctttatattctgcttctgtagaagagcgagcaacagaac |
79307 |
T |
|
| Q |
242 |
gttgttttcgagagctccaagagatgggcgtg |
273 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |
|
|
| T |
79306 |
attgttttagagagctccaagagatgggcgtg |
79275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University