View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19539_low_29 (Length: 255)
Name: NF19539_low_29
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19539_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 36956463 - 36956240
Alignment:
| Q |
12 |
aatactcgagtggaataatttgtcttgttaaacacaacatataaaggtccgaccgtacatgtatttgaaacttcataattaatgaaatcaaagtttgaaa |
111 |
Q |
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| T |
36956463 |
aatactcgagtggaataatttgtcttgttaaacacaacatataaaggtccgaccgtacatgtatttgaaacttcataattaatgaaatcaaagtttgaaa |
36956364 |
T |
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| Q |
112 |
agtaatcttgactcatagtatcatttcatgtttgacaccaaccnnnnnnncatatggtcccaattacactcataaatattagccttataaaaattaaatc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36956363 |
agtaatcttgactcatagtatcatttcatgtttgacaccaaccaaaaaaacatatggtcccaattacactcataaatattagccttataaaaattaaatc |
36956264 |
T |
|
| Q |
212 |
agttcccataaattcatggatagat |
236 |
Q |
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| ||||||| ||||||||||||||| |
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| T |
36956263 |
aattcccat-aattcatggatagat |
36956240 |
T |
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