View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19539_low_3 (Length: 718)
Name: NF19539_low_3
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19539_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 17 - 509
Target Start/End: Original strand, 6917429 - 6917921
Alignment:
| Q |
17 |
cagttctgcaacaggaaacaggtactatccggagacgagtttgaagccgggagcacttcgctccccatacagaggtcacaactgtccagaaaggcaagtt |
116 |
Q |
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| T |
6917429 |
cagttctgcaacagggaacaggtactatccggagacgagtttgaagccgggagcacttcgctccccatacagaggtcacaactgtccagaatggcaagtt |
6917528 |
T |
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| Q |
117 |
ccaggccatcaagattgagcgcggcgaggttgattccgaaacatataggttctgattttccttttgcttgttgtttgagcacactcaatataaaatgcta |
216 |
Q |
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| T |
6917529 |
ccaggccatcaagattgagcgcggcgaggttgatttcgaaacatataggttctgattttccatttgcttgttgtttgagcacactcaatataaaatgcta |
6917628 |
T |
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| Q |
217 |
aatgcacagacttattattcaataataatattgatcacaaacactcagtttccactaagagatggtgcagggccaagtgataagtaatttttgcactatt |
316 |
Q |
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| T |
6917629 |
aatgcacagacttattattcaataataatattgatcacaaacactcagtttccactaagagatggtgcagggccaagtgataagtaatttttgcactatt |
6917728 |
T |
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| Q |
317 |
tgatgactgttcttggcacacatgcatgctgtttccacgcctgtgttatggttggttgagaggctatgatgttaacataatttgtccactggtgttgaaa |
416 |
Q |
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| T |
6917729 |
tgatgactgttcttggcacatatgcatgatgtttccacgcctgtgttatggttggttgagaggctatgatgttaacataatttgtccactggtgttgaaa |
6917828 |
T |
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| Q |
417 |
agtcaaatggcttatgtcatgagaacaacaaggttacatggtcgtttccaagatcaatggtaaaggttaaaaacttgaagtaatggtaatttg |
509 |
Q |
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| T |
6917829 |
agtcaaatggcttatgtcatgagaacaacaaggttacatggtcatttccaagatcaacggtaaaggttaaaaacttgaagtaatggtaatttg |
6917921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 537 - 688
Target Start/End: Complemental strand, 34821448 - 34821297
Alignment:
| Q |
537 |
aataagaagatccgtaatggcgtgaggattatatggcatgtcgcgatttggaacatttggaaagcgaggaatgattttatatttaacaatgctgtcatac |
636 |
Q |
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| T |
34821448 |
aataaaaagattcgtaagggagtgaggcttatttggcacgccgcgatttggagcatatggaaagcgaggaatgatattatttttaacaatgctgttttag |
34821349 |
T |
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| Q |
637 |
atactgaagagttgttagaatcaattaaggttttatcttggaggtggtgttt |
688 |
Q |
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| T |
34821348 |
attttgaggcactgttggaatcaataaaggttttgtggtggaggtggtgttt |
34821297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 610
Target Start/End: Original strand, 1557245 - 1557318
Alignment:
| Q |
537 |
aataagaagatccgtaatggcgtgaggattatatggcatgtcgcgatttggaacatttggaaagcgaggaatga |
610 |
Q |
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| T |
1557245 |
aataaaaagattcggaagggtgtgaggcttatttggcatgccaccatttggaacatttggaaagcaaggaatga |
1557318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 699
Target Start/End: Original strand, 1557362 - 1557407
Alignment:
| Q |
654 |
gaatcaattaaggttttatcttggaggtggtgtttggggagattga |
699 |
Q |
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| T |
1557362 |
gaatcaattaaggtattgtcgtggaggtggtgtttgggtagattga |
1557407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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