View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19539_low_31 (Length: 246)
Name: NF19539_low_31
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19539_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 28788368 - 28788154
Alignment:
| Q |
14 |
aatattaataataatttaaaactcacttgctttgccattgctgcagttgcttccttagttgtggatggtttctcctcaaattttattttagtttgaccct |
113 |
Q |
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| T |
28788368 |
aatattaataataatttaaaactcacttgctttgccattgctgcagttgcttccttagttgtggatggtttctcctcaaattttattttagtttgaccct |
28788269 |
T |
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| Q |
114 |
acaaccacagattacatatttagttacaatttttcagaaatgtaatatcatatacagatgtaccagctaagagctatccccatagatcaaatacaagtgt |
213 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28788268 |
acaaccacagattacatatatagttacaatttttcagaaatgtaatatcatatacagatgtaccagctaagagctaaccccatagatcaaatacaagtgt |
28788169 |
T |
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| Q |
214 |
tcttagaatgtatca |
228 |
Q |
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| T |
28788168 |
tattagaatgtatca |
28788154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 28774517 - 28774357
Alignment:
| Q |
65 |
tccttagttgtggatggtttctcctcaaattttattttagtttgaccctacaaccacagattacatatttagttacaatttttcagaaatgtaatatcat |
164 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28774517 |
tccttagttgtggatggtttctcctcaaattttattttagtttcagcctacaaccacagattacatatttagttacaattcttcagaaatgtaatatc-- |
28774420 |
T |
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| Q |
165 |
atacag-atgtaccagctaagagctatccccatagatcaaatacaagtgttcttagaatgtat |
226 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28774419 |
atacagcatgtaccagctaagagctatccccatagatcaaatacaagtgttcttagaatgtat |
28774357 |
T |
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