View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19539_low_33 (Length: 237)
Name: NF19539_low_33
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19539_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 32401600 - 32401511
Alignment:
| Q |
1 |
cagtccaaagagttttgggctgatttttctacccctccaatctacaaaattaatcactctctcaagaactaaacaatatagttttaagta |
90 |
Q |
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| T |
32401600 |
cagtccaaagagttttgggctgatttttctacccctccaatctacaaaattaatcactctctcaagaactaaacaatatagttttaagta |
32401511 |
T |
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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 32401416 - 32401382
Alignment:
| Q |
189 |
caagttattaattatttgatggaagaaagaatatg |
223 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
32401416 |
caagttattaattatttgatggaagaaagaatatg |
32401382 |
T |
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