View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19539_low_34 (Length: 236)
Name: NF19539_low_34
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19539_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42762194 - 42762414
Alignment:
| Q |
1 |
cttatgaggtggtaattcaagctctgaaaggctagctccctaacaataaaaatttcaaacaagtaattaaccttactaaaaatattaaaataacaaagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42762194 |
cttatgaggtggtaattcaagctctgaaaggctagctccctaacaataaaaatttcaaacaagtaattaaccttactaaaaatattaaaataacaaagga |
42762293 |
T |
|
| Q |
101 |
agttagagatatnnnnnnnttgttccccaaattttacatttctaatgattagcgacataatcaaaaatacaaattttgtcttttccatatctgaatttcc |
200 |
Q |
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| T |
42762294 |
agttagagatataaaaaaattgttccccaaattttacatttctaatgcttagcgatataatcaaaaatacaaattttgtcttttccatatctgaatttcc |
42762393 |
T |
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| Q |
201 |
ttacttattttaactttttct |
221 |
Q |
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||||||||||||||||||||| |
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| T |
42762394 |
ttacttattttaactttttct |
42762414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 42743367 - 42743482
Alignment:
| Q |
1 |
cttatgaggtggtaattcaagctctgaaaggctagctccctaacaataaaaatttcaaacaagtaattaaccttacta----aaaatattaaaataacaa |
96 |
Q |
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||||||||| ||||||||| ||||||||||||| |||||||||||| | |||||||||||| ||||||| ||||||| ||| ||||||||||||| |
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| T |
42743367 |
cttatgaggcggtaattcatgctctgaaaggctctctccctaacaatgacaatttcaaacaattaattaaacttactaaattaaagaattaaaataacaa |
42743466 |
T |
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| Q |
97 |
aggaagttagagatat |
112 |
Q |
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||||| |||||||||| |
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| T |
42743467 |
aggaaattagagatat |
42743482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 42752726 - 42752841
Alignment:
| Q |
1 |
cttatgaggtggtaattcaagctctgaaaggctagctccctaacaataaaaatttcaaacaagtaattaaccttacta----aaaatattaaaataacaa |
96 |
Q |
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||||||||| ||||||||| ||||||||||||| |||||||||||| | |||||||||||| ||||||| ||||||| ||| ||||||||||||| |
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| T |
42752726 |
cttatgaggcggtaattcatgctctgaaaggctctctccctaacaatgacaatttcaaacaattaattaaacttactaaattaaagaattaaaataacaa |
42752825 |
T |
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| Q |
97 |
aggaagttagagatat |
112 |
Q |
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||||| |||||||||| |
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| T |
42752826 |
aggaaattagagatat |
42752841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 42735370 - 42735319
Alignment:
| Q |
1 |
cttatgaggtggtaattcaagctctgaaaggctagctccctaacaataaaaa |
52 |
Q |
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||||||||||||||| | | |||||||||||||||||||||||| |||||| |
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| T |
42735370 |
cttatgaggtggtaagtgagactctgaaaggctagctccctaacattaaaaa |
42735319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 23041092 - 23040992
Alignment:
| Q |
11 |
ggtaattcaagctctgaaaggctagctccctaacaataaaaatttcaaacaagtaattaaccttactaaaaatattaaaataacaaaggaagttagagat |
110 |
Q |
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|||| |||| ||||||||||||| ||||||||||| | | |||||||||| ||||||| ||||||||| | |||||||||||||||||| |||||||| |
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| T |
23041092 |
ggtagttcatgctctgaaaggctctttccctaacaatgacagtttcaaacaattaattaaacttactaaaga-attaaaataacaaaggaaattagagat |
23040994 |
T |
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| Q |
111 |
at |
112 |
Q |
| |
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|| |
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| T |
23040993 |
at |
23040992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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