View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19539_low_5 (Length: 639)
Name: NF19539_low_5
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19539_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 15 - 623
Target Start/End: Original strand, 45100997 - 45101612
Alignment:
| Q |
15 |
ataattcttgtagtgccaagtttggattgctagatatatttctttcgcttgtgggggtaatacattcaactttacacacatagttgttgagttggcagtc |
114 |
Q |
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| T |
45100997 |
ataattcttgtagtgccaagtttggattgctagatatatttctttcgcttgtgggggtaatacattcaactttacacacatagttgttgagttggcagtc |
45101096 |
T |
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| Q |
115 |
gagtcacgcttaacttccttattgctagttttgtaattgttcatatgaatagtagaaactaaatattggtccgtataggttatcttattgatttctctct |
214 |
Q |
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| T |
45101097 |
gagtcacgcttaacttccttattgctagttttgtaattgttcatatgaatagtagaaactaaatattggtccgtataggttatcttattgatttctctct |
45101196 |
T |
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| Q |
215 |
ggtttcaagttggttgtatttatgttggcataaatggatgcatgtgccggatttttcagtctcaaactttgtgaggttggccatcaatttcaacctgata |
314 |
Q |
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| T |
45101197 |
ggtttcaagttggttgtatttatgttggcataaatggatgcatgtgccggatttttcagtctcaaactttgtgaggttggccatcaatttcaacctgata |
45101296 |
T |
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| Q |
315 |
aaagtagtatgataatcaatcaagtgagaaatatggggtagcaagcaattataatgtcttttactcttacnnnnnnnnngtgatgcgatgactagtgttg |
414 |
Q |
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| T |
45101297 |
aaagtagtatgataatcaatcaagtgagaaatatggggtagcaagcaattataatgtcttttactcttgcaaaaaaaaagtgatgcgatgactagtgttg |
45101396 |
T |
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| Q |
415 |
tctcacccttaaaggtatataagaaaacgtgggaaggaaaggaaacaccgagagcgaacaataataatacgataattttttctcaccaaataaatccaan |
514 |
Q |
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| T |
45101397 |
tctcacccttaaaggtatataagaaaacgtgggaaggaaaggaaacaccgagagcgaacaataataatacgacaattttttctcaccaaacaaatccaat |
45101496 |
T |
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| Q |
515 |
nnnnnncttcatcgtcattttgtaacaatcaataactttgtttttgtcgagtataaaaattcac-------aagtgaataaattagatgtctgg-gttcg |
606 |
Q |
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| T |
45101497 |
tttttt-ttcttcatcattctgtaacaatcaataactttgtttttgtctagtataaaaattcacctttgtaaagtgaaaaaattagatgtctggtgttcg |
45101595 |
T |
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| Q |
607 |
aactccgaccttacttg |
623 |
Q |
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| T |
45101596 |
aagtccgaccttacttg |
45101612 |
T |
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