View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19539_low_6 (Length: 573)
Name: NF19539_low_6
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19539_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Original strand, 17687589 - 17688131
Alignment:
| Q |
1 |
aggctttgggatttatattttggtggtggatcttcaaactagatgtttcacgaatataaacaattgctggtatgagaaacaagcaaggctctcaattgtt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
17687589 |
aggctttggggtttatattttggtggtggatcttcaaactggatgtttcacgaatataaacaattgccggtatgagaaacaa-caaggctctcaattgtt |
17687687 |
T |
|
| Q |
101 |
caagtgtaatgtttgtttaattagtggggctaataatatcctgattattaagttatggtgtccttaacatacttatcatgtaggtagttcatatttgtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17687688 |
caagtgtaatgtttgtttaattagtggggctaataatatcctgattattaagttatagtgtccttaacatacttatcatgtaggtagttcatatttgtta |
17687787 |
T |
|
| Q |
201 |
ttgtttcagtttatggtgtttttcattaatcatccttaatttgtttatgctgtagcgatcatgaataagcaacaatcgatggaatctgaaatgttcttaa |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
17687788 |
ttgtttcagtttatggtgtttttcaataatcatctttaatttatttatgctgtagcgatcatgaataagcaacaattgatgaaatctgaaatgttcttaa |
17687887 |
T |
|
| Q |
301 |
gcatatttataatcaaatccggtatgtagtttaatttctccatnnnnnnnnnnnnttgatggaatatctccatcaatgtgctcaagaagaactaacctca |
400 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17687888 |
gcacatttataatcaaatctggtatgtagtttaatttctccat--caaaaaagaattgatggaatatctccatcaatgtgctcaagaaaaactaacctca |
17687985 |
T |
|
| Q |
401 |
tatttctgtttgattataaatgttcttcaactacttacatgttctcaagcatatttataatcaaatccgatatgtaatttaatttctttatttgggacaa |
500 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17687986 |
tctttctgtttgattataaatgttcttctactacttacatgttcttaagcatatttataatcaaatccgatatgtaatttaatttctttatttgggacaa |
17688085 |
T |
|
| Q |
501 |
acttataagttataacctcatctctctttatgctcttctactttggatatctc |
553 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17688086 |
ac-------ttataacctcatctctctttatgctcttctactttggatatctc |
17688131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 291 - 556
Target Start/End: Original strand, 37983121 - 37983376
Alignment:
| Q |
291 |
atgttcttaagcatatttataatcaaatccggtatgtagtttaatttctccatnnnnnnnnnnnnttgatggaatatctccatcaatgtgctcaagaaga |
390 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| || | |
|
|
| T |
37983121 |
atgttcttaagcacatttataatcaaatctggtatgtagtttaatttctccatcaaaaaagaa--ttgatggaatatctccatcaatgtgctcaataaaa |
37983218 |
T |
|
| Q |
391 |
actaacctcatatttctgtttgattataaatgttcttcaactacttacatgttctcaagcatatttataatcaaatccgatatgtaatttaatttcttta |
490 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37983219 |
actaacctcatctttctgtttgattataaatgttcttctactacttacatgttcctaagcat-tttataatcaaatccgatatgtaatttaatttcttta |
37983317 |
T |
|
| Q |
491 |
tttgggacaaacttataagttataacctcatctctctttatgctcttctactttggatatctctat |
556 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37983318 |
tttgggacaaac-------ttataacttcatctctctttatgctcttctactttggatatctctat |
37983376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 168; Significance: 9e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 287 - 553
Target Start/End: Complemental strand, 22000979 - 22000722
Alignment:
| Q |
287 |
tgaaatgttcttaagcatatttataatcaaatccggtatgtagtttaatttctccatnnnnnnnnnnnnttgatggaatatctccatcaatgtgctcaag |
386 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22000979 |
tgaaattttcttaagcacatttataatcaaatctggtatgtagtttaatttctccatcaaaaaagaa--ttgatggaatatctccatcaatgtgctcaag |
22000882 |
T |
|
| Q |
387 |
aagaactaacctcatatttctgtttgattataaatgttcttcaactacttacatgttctcaagcatatttataatcaaatccgatatgtaatttaatttc |
486 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
22000881 |
aaaaactaacctcatctttctgtttgattataaatgttcttctactacttacatgttcttaagtatatttataatcaaatccgatatgtaatttaatttc |
22000782 |
T |
|
| Q |
487 |
tttatttgggacaaacttataagttataacctcatctctctttatgctcttctactttggatatctc |
553 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22000781 |
tttatttgggacaaactt-------ataacctcatctctctttatgctcttctactttggatatctc |
22000722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 30834247 - 30834194
Alignment:
| Q |
258 |
atcatgaataagcaacaatcgatggaatctgaaatgttcttaagcatatttata |
311 |
Q |
| |
|
||||||||| ||||||||| ||||||||| ||||||||||| ||| ||||||| |
|
|
| T |
30834247 |
atcatgaatgagcaacaattgatggaatccaaaatgttcttatgcacatttata |
30834194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University