View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19539_low_8 (Length: 501)
Name: NF19539_low_8
Description: NF19539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19539_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 364
Target Start/End: Original strand, 51121542 - 51121898
Alignment:
| Q |
11 |
agaatatgcaaggttgtattctaatggtaatactaggtaatagaacaaacagtataaaatttaaatattaatggactgatttgttcacattcatttgata |
110 |
Q |
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| T |
51121542 |
agaaaatgcaaggttgtattctaatgataatactaggtaatagaacaaacagtataaaatttaaatattaatggactgattttttcacattcatttgata |
51121641 |
T |
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| Q |
111 |
tttgtgcttcatgcttcataatcattaaattgctggagcagtggagcctaaaataggagtttggcttttagggctgtttcagagatgttatttgggttga |
210 |
Q |
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| T |
51121642 |
tttgtgcttcatgcttcataatcattaaattgctggagcagtggagcctaaaataggagtttggcttttagggctgtttcagagatgttatttgggttga |
51121741 |
T |
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| Q |
211 |
cgttctgtatttgataatattttaatccaaaatttagttcaatgatgactacattttagtgattttacaagcg---tcaacaatgaaactccttttgtga |
307 |
Q |
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| T |
51121742 |
cgttctgtatttgataatattttaatccaaaatttagttcaatgatgactacattttagtgattttacaagcgtcatcaacaatgaaactccttttgtga |
51121841 |
T |
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| Q |
308 |
agcagtcactttgagcctccataaaaaatcacgcatatatgatatgtatccataact |
364 |
Q |
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| T |
51121842 |
agcagtcactttgagcctccataaaaaatcactcatatatgatatgtatccttaact |
51121898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 401
Target Start/End: Original strand, 51122010 - 51122052
Alignment:
| Q |
359 |
ataactggttttgaacaaaaatggttttaaaataggctttgaa |
401 |
Q |
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| T |
51122010 |
ataactggttttgaacaaaaatggttttaaaataggctttgaa |
51122052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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