View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1953_high_1 (Length: 722)
Name: NF1953_high_1
Description: NF1953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1953_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 89 - 584
Target Start/End: Original strand, 18691383 - 18691892
Alignment:
| Q |
89 |
tattcaaagtccaagcttgtgcataataggcatgttttcttattttcatgcatctgctttctaaagaagtctgcatgcaatgcattcacattttcttgat |
188 |
Q |
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| T |
18691383 |
tattcaaagtccaagcttgtgcataataggcatgttttcttattttcatgcatctgctttctaaggaagtctgcatgcaatgcattcacattttcttgat |
18691482 |
T |
|
| Q |
189 |
ctagtattctt--gtgttgtattatctctaatccttattataagaaaatctttgaagattattttggccctattcattagaaaatctctaatcacaattt |
286 |
Q |
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| T |
18691483 |
ctagtattcttttgtgttgtattatctctaatccttattataagaaaatctttgaagattattttggccctattcattagaaaatctctaatcacaattt |
18691582 |
T |
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| Q |
287 |
ttatggtctatttagttcttaatagacttttctactcctcatttattatgtcactccgtattttgttccaaagtcaattctatacacatcaattctaacc |
386 |
Q |
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| T |
18691583 |
ttatggtctatttagttcttaatagacttttctactcctcatttattatgtcactccgtattttgttccaaagtcaattctatacacatcaattctaacc |
18691682 |
T |
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| Q |
387 |
cttataaaatggaaccaaacatataaaagcttgataatgatttagataatattaatggataggtggattatagattaaataaagaccggccaaaattcac |
486 |
Q |
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| T |
18691683 |
cttataaaatggaaccaaacatataaaagcttgataatgatttagataatattaatggataggtggattatagattaaataaagaccggccaaaattcac |
18691782 |
T |
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| Q |
487 |
aactttaacaccttacaaggaaaccaaata------------ttaaattgcacaaccaatatttaacattactaccctattgtttgtccattttctctta |
574 |
Q |
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| T |
18691783 |
aactttaacaccttacaaggaaaccaaatattgtagggctttttaaattgcacaaccaatatttaacattactaccctattgtttgtccattttctctta |
18691882 |
T |
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| Q |
575 |
tatctatcca |
584 |
Q |
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| T |
18691883 |
tatccatcca |
18691892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 18691239 - 18691309
Alignment:
| Q |
19 |
tatgcaacgtcaacgttctggaatcgatggcaggactcttgctcatcgaactggatgtaacaaacaaggat |
89 |
Q |
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| T |
18691239 |
tatgcaacgtcaacattctggaatcgatggcaggacttttgctcgttgaactggatgtaacaaacaaggat |
18691309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 17901745 - 17901675
Alignment:
| Q |
19 |
tatgcaacgtcaacgttctggaatcgatggcaggactcttgctcatcgaactggatgtaacaaacaaggat |
89 |
Q |
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| T |
17901745 |
tatgcaacgtcgacgttctggaattgatggcaggactcttgctcgtcgacttggatgtaacaaacaaggat |
17901675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 671 - 700
Target Start/End: Original strand, 18691978 - 18692007
Alignment:
| Q |
671 |
aaggattctatatgtaatgttaaattaggt |
700 |
Q |
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| T |
18691978 |
aaggattctatatgtaatgttaaattaggt |
18692007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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