View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1953_high_3 (Length: 596)

Name: NF1953_high_3
Description: NF1953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1953_high_3
NF1953_high_3
[»] chr1 (26 HSPs)
chr1 (178-576)||(39914639-39915030)
chr1 (1-114)||(39914420-39914537)
chr1 (166-254)||(38748743-38748831)
chr1 (171-280)||(39156231-39156340)
chr1 (179-256)||(47187856-47187933)
chr1 (166-254)||(8794412-8794500)
chr1 (171-252)||(604458-604537)
chr1 (172-286)||(34232735-34232849)
chr1 (171-279)||(14746227-14746334)
chr1 (171-256)||(2864137-2864221)
chr1 (179-255)||(8365498-8365574)
chr1 (171-221)||(43397042-43397092)
chr1 (179-280)||(39150552-39150653)
chr1 (179-236)||(44329610-44329667)
chr1 (166-256)||(4851267-4851356)
chr1 (177-279)||(34409705-34409807)
chr1 (171-261)||(42791169-42791259)
chr1 (202-255)||(8372990-8373043)
chr1 (171-255)||(38491216-38491300)
chr1 (176-256)||(45640541-45640621)
chr1 (191-254)||(40460770-40460833)
chr1 (171-250)||(44829272-44829351)
chr1 (166-256)||(3982259-3982349)
chr1 (171-229)||(26811259-26811317)
chr1 (166-256)||(32562375-32562465)
chr1 (179-280)||(48022388-48022489)
[»] chr8 (22 HSPs)
chr8 (171-280)||(28207594-28207703)
chr8 (166-254)||(33013041-33013129)
chr8 (172-256)||(4384163-4384247)
chr8 (168-268)||(12684518-12684618)
chr8 (177-255)||(13028124-13028202)
chr8 (171-256)||(167871-167956)
chr8 (166-255)||(33949572-33949661)
chr8 (166-255)||(37813424-37813514)
chr8 (171-256)||(27801253-27801338)
chr8 (171-259)||(1369886-1369974)
chr8 (174-255)||(16723225-16723306)
chr8 (171-280)||(42636393-42636502)
chr8 (190-248)||(2250356-2250414)
chr8 (175-256)||(9024482-9024563)
chr8 (171-256)||(24695741-24695826)
chr8 (171-236)||(35901945-35902010)
chr8 (171-255)||(2258118-2258202)
chr8 (171-229)||(1135182-1135240)
chr8 (171-229)||(3520835-3520893)
chr8 (188-249)||(2888764-2888825)
chr8 (188-249)||(3146037-3146098)
chr8 (188-229)||(5588981-5589022)
[»] chr7 (18 HSPs)
chr7 (116-255)||(39320954-39321093)
chr7 (166-255)||(35731282-35731371)
chr7 (166-244)||(3692883-3692961)
chr7 (171-255)||(28770472-28770556)
chr7 (193-280)||(44537311-44537398)
chr7 (171-280)||(27123244-27123353)
chr7 (167-279)||(44592837-44592949)
chr7 (171-238)||(7653588-7653655)
chr7 (166-256)||(27337692-27337781)
chr7 (171-256)||(7968586-7968671)
chr7 (171-280)||(28663166-28663273)
chr7 (171-280)||(43234760-43234869)
chr7 (176-252)||(21727438-21727514)
chr7 (196-256)||(32699804-32699863)
chr7 (171-229)||(42936028-42936085)
chr7 (166-239)||(18801051-18801124)
chr7 (190-238)||(29711539-29711587)
chr7 (171-255)||(43224114-43224198)
[»] chr6 (13 HSPs)
chr6 (168-255)||(1840978-1841065)
chr6 (166-256)||(19293475-19293565)
chr6 (179-255)||(28874394-28874470)
chr6 (171-256)||(2692457-2692542)
chr6 (171-279)||(9762774-9762881)
chr6 (191-255)||(11720925-11720989)
chr6 (171-234)||(32823693-32823756)
chr6 (168-206)||(30801785-30801823)
chr6 (171-221)||(31855083-31855133)
chr6 (171-256)||(26669306-26669391)
chr6 (208-280)||(30509286-30509358)
chr6 (171-255)||(3766272-3766356)
chr6 (171-247)||(7421675-7421751)
[»] chr4 (24 HSPs)
chr4 (171-292)||(45900176-45900297)
chr4 (171-280)||(7444412-7444522)
chr4 (166-255)||(37138184-37138273)
chr4 (171-256)||(51834908-51834993)
chr4 (171-247)||(31429280-31429356)
chr4 (169-256)||(51736348-51736435)
chr4 (171-256)||(7852571-7852656)
chr4 (171-280)||(8297841-8297950)
chr4 (171-280)||(49400583-49400691)
chr4 (171-248)||(50341894-50341971)
chr4 (171-254)||(35777726-35777809)
chr4 (179-255)||(20394633-20394709)
chr4 (171-250)||(50426989-50427068)
chr4 (166-256)||(25115285-25115375)
chr4 (171-256)||(37383782-37383866)
chr4 (188-274)||(48337532-48337618)
chr4 (171-221)||(53014233-53014283)
chr4 (171-220)||(42222985-42223034)
chr4 (171-255)||(27953068-27953151)
chr4 (171-238)||(34391734-34391801)
chr4 (166-221)||(43969207-43969262)
chr4 (171-254)||(47995764-47995847)
chr4 (171-255)||(49084427-49084512)
chr4 (188-256)||(12618738-12618806)
[»] chr5 (17 HSPs)
chr5 (166-280)||(15720037-15720151)
chr5 (171-256)||(7719198-7719283)
chr5 (171-255)||(30501167-30501251)
chr5 (171-255)||(30541510-30541594)
chr5 (171-252)||(9276607-9276688)
chr5 (171-255)||(16667319-16667403)
chr5 (171-255)||(30104799-30104883)
chr5 (171-254)||(2918624-2918707)
chr5 (116-277)||(8221096-8221256)
chr5 (171-254)||(18229629-18229712)
chr5 (208-256)||(141866-141914)
chr5 (176-255)||(13480013-13480093)
chr5 (171-238)||(3140826-3140893)
chr5 (171-256)||(34899163-34899248)
chr5 (171-256)||(39558794-39558879)
chr5 (171-255)||(8208174-8208258)
chr5 (188-256)||(41047980-41048048)
[»] chr2 (19 HSPs)
chr2 (171-255)||(1334911-1334995)
chr2 (131-256)||(41933125-41933250)
chr2 (171-280)||(4762319-4762428)
chr2 (171-250)||(19890216-19890295)
chr2 (181-254)||(40789703-40789777)
chr2 (171-256)||(15505538-15505623)
chr2 (171-280)||(38533373-38533480)
chr2 (171-255)||(9448981-9449064)
chr2 (170-252)||(31452372-31452454)
chr2 (171-255)||(19514866-19514950)
chr2 (166-252)||(14295626-14295712)
chr2 (171-232)||(43617514-43617575)
chr2 (166-245)||(9173728-9173808)
chr2 (171-254)||(31017335-31017418)
chr2 (116-252)||(37993076-37993212)
chr2 (166-280)||(11944895-11945009)
chr2 (166-255)||(13538391-13538480)
chr2 (166-255)||(20064906-20064995)
chr2 (171-256)||(38533896-38533980)
[»] chr3 (13 HSPs)
chr3 (166-255)||(39551878-39551966)
chr3 (139-257)||(47638888-47639006)
chr3 (188-256)||(48180215-48180283)
chr3 (171-240)||(45988253-45988321)
chr3 (171-280)||(42846032-42846143)
chr3 (166-256)||(52638180-52638270)
chr3 (190-255)||(49362400-49362465)
chr3 (234-290)||(46547872-46547928)
chr3 (166-221)||(16663006-16663061)
chr3 (171-250)||(51351277-51351356)
chr3 (171-255)||(26900050-26900136)
chr3 (188-229)||(22730530-22730571)
chr3 (171-256)||(52249320-52249405)
[»] scaffold0419 (1 HSPs)
scaffold0419 (179-255)||(1060-1136)
[»] scaffold1444 (2 HSPs)
scaffold1444 (166-238)||(954-1026)
scaffold1444 (166-224)||(1726-1784)
[»] scaffold0204 (1 HSPs)
scaffold0204 (188-274)||(25054-25140)
[»] scaffold0036 (1 HSPs)
scaffold0036 (179-254)||(62560-62635)
[»] scaffold0268 (1 HSPs)
scaffold0268 (166-224)||(20270-20328)
[»] scaffold0119 (1 HSPs)
scaffold0119 (171-256)||(1402-1487)


Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 178 - 576
Target Start/End: Original strand, 39914639 - 39915030
Alignment:
Q  178 gtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccgttaacaa 277  Q
    ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||  | | ||||| |||||||||    
T  39914639 gtgtattgagtgcattgaaaattgtaatagttgactttttaaaagaacaattgttaaatttggtatgcttaaagagtgtcccggaagcactcgttaacaa 39914738  T
Q  278 gacacattttaaaataatgaatgcaccattttgtgttaaaaaagacatgtatccttaacatacatttatgttaatatcttgtttcattcaataagattat 377  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||    
T  39914739 gacccattttaaaataatgaatgcaccattttgtgttaaaaaagacatgtatccttaacatacatttatgttaatatcttgtttcattca--------at 39914830  T
Q  378 aagagagtcttaacaagtatagatgagttcaacttacaaaaataagtaaataatcatttaataataatgatatttgaacactttga-nnnnnnnnnnnnn 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  
T  39914831 aagagagtcttaacaagtatagatgagttcaacttacaaaaataagtaaataatcatttaataataatgatatttgaacactttgatttttttttttata 39914930  T
Q  477 nnnnnnnncagcacttcattttatctcaagcactattcctatcatatctatcttttatttctttatctctgaagatgtaactccattcatatggatatgg 576  Q
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  39914931 tattttttcagcacttcattttatctcgagcactattcctatcatatctatcttttatttctttatctctcaagatgtaactacattcatatggatatgg 39915030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 39914420 - 39914537
Alignment:
Q  1 aattagatatacgtacatacagttttagacatgtactagtactagaataaaattaaaaatcctctaaatgtatatactg----cagcacttgcatgtcat 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||| ||||||||    
T  39914420 aattagatatacgtacatacagttttagacatgtactagtactagaataaaattaaaaatcctctaaatgtatatactgtagcaagcacttacatgtcat 39914519  T
Q  97 tgatgtccgagagctttg 114  Q
    ||||||||||||||||||    
T  39914520 tgatgtccgagagctttg 39914537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 166 - 254
Target Start/End: Original strand, 38748743 - 38748831
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagt 254  Q
    |||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||  |||||||||||||||||||||||    
T  38748743 ttatgaaaagttgtgtattgagtgcattgaaaattataatagttgactttttaaaagaataatttctaaatttggtatgcttaaagagt 38748831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 171 - 280
Target Start/End: Complemental strand, 39156340 - 39156231
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccg 270  Q
    |||| ||||||||||| ||||||||||||| || ||||||| |||||||||||| ||||  |||||||   ||||||||||||||| ||||| |||| ||    
T  39156340 aaaaattgtgtattgaatgcattggaaattgtagtagttgactttttaaaagaataattactaaatttttgatgcttaaagagtgtctcaggggcactcg 39156241  T
Q  271 ttaacaagac 280  Q
    ||||||||||    
T  39156240 ttaacaagac 39156231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 47187856 - 47187933
Alignment:
Q  179 tgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||| ||||  ||||||||| |||||||||||||||    
T  47187856 tgtattgaatgcattggaaattataatagttgattttttaaatgaataattactaaatttgggatgcttaaagagtgt 47187933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 166 - 254
Target Start/End: Complemental strand, 8794500 - 8794412
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagt 254  Q
    |||| ||||||||||||| |||||||||| |||||||||||||||| |||||||||||| ||||  ||||||| | |||||||||||||    
T  8794500 ttataaaaagttgtgtatggagtgcattgaaaattataatagttgactttttaaaagaataattactaaatttaggatgcttaaagagt 8794412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 604458 - 604537
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaaga 252  Q
    |||| ||||||||||||||||||||||||||||||| |||| ||||||||| |  | |||||||||||||||||||||||||    
T  604458 aaaaattgtgtattgagtgcattggaaattataataattgactttttaaaata--atttgttaaatttggtatgcttaaaga 604537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 172 - 286
Target Start/End: Original strand, 34232735 - 34232849
Alignment:
Q  172 aaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccgt 271  Q
    |||||||||||||||  |||||| ||||| |||||||||| |||||||||||| ||||| ||||||  | |||||||||||||||  |  |||||| |||    
T  34232735 aaagttgtgtattgaaagcattgaaaattgtaatagttgactttttaaaagaataattgctaaattaaggatgcttaaagagtgtcccgtgagcactcgt 34232834  T
Q  272 taacaagacacattt 286  Q
    ||||||||| |||||    
T  34232835 taacaagacccattt 34232849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 171 - 279
Target Start/End: Original strand, 14746227 - 14746334
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccg 270  Q
    |||||||||||||| |  |||||| ||||||||| |||||||||||||| | || ||||| |||||||||||| ||||||||||||  |||| |||| ||    
T  14746227 aaaagttgtgtattcatagcattgaaaattataacagttgattttttaagaaaataattgctaaatttggtatacttaaagagtgt-ccaggggcactcg 14746325  T
Q  271 ttaacaaga 279  Q
    |||||||||    
T  14746326 ttaacaaga 14746334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 2864221 - 2864137
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    |||||||||||||||| ||||||||||||| |||||||||| ||||| |||||| ||||  ||||| ||| ||| |||||||||||    
T  2864221 aaaagttgtgtattgaatgcattggaaattgtaatagttgacttttt-aaagaataattcctaaatatgggatgtttaaagagtgt 2864137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 8365574 - 8365498
Alignment:
Q  179 tgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||||||| ||||||| | ||| ||||||||||||||||||||||| |||| |||||||| | ||| ||||||||||    
T  8365574 tgtattgaatgcattgaagattgtaatagttgattttttaaaagaataattattaaatttaggatgtttaaagagtg 8365498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 43397042 - 43397092
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaa 221  Q
    |||||||||||||| | |||||||||||||||||||||||| |||||||||    
T  43397042 aaaagttgtgtattaaatgcattggaaattataatagttgactttttaaaa 43397092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 179 - 280
Target Start/End: Complemental strand, 39150653 - 39150552
Alignment:
Q  179 tgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccgttaacaag 278  Q
    |||||||| ||||||| ||||| |||||||||| |||||| ||||| ||||  ||||||| | ||||||||||||||   | || |||| ||||||||||    
T  39150653 tgtattgaatgcattgtaaattgtaatagttgactttttacaagaataattactaaatttaggatgcttaaagagtgccccgggggcactcgttaacaag 39150554  T
Q  279 ac 280  Q
    ||    
T  39150553 ac 39150552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 44329667 - 44329610
Alignment:
Q  179 tgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaat 236  Q
    |||||||| ||||||| |||||||||||||||| |||||||||||| |||| ||||||    
T  44329667 tgtattgaatgcattgaaaattataatagttgactttttaaaagaataattattaaat 44329610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 4851267 - 4851356
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    |||| |||||||| ||| | |||||||| |||||| |||||||||| |||||||| ||| |||| ||||| |||  |||||||||||||||    
T  4851267 ttatgaaaagttgggtagtaagtgcatttgaaattgtaatagttgactttttaaa-gaataatttttaaaattgacatgcttaaagagtgt 4851356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 279
Target Start/End: Complemental strand, 34409807 - 34409705
Alignment:
Q  177 tgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccgttaaca 276  Q
    |||||||||| ||||||||||||||||||| ||||||||  |||| || ||||  |||||||   ||||||||||||| | || |  |||| ||||||||    
T  34409807 tgtgtattgaatgcattggaaattataataattgattttaaaaaaaaaaaattactaaatttaaaatgcttaaagagtatctcggacgcactcgttaaca 34409708  T
Q  277 aga 279  Q
    |||    
T  34409707 aga 34409705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 261
Target Start/End: Original strand, 42791169 - 42791259
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcag 261  Q
    ||||| |||||||||| ||||||  ||||  | |||||||| ||||||||| || |||||||||||||   ||||||||||||||| ||||    
T  42791169 aaaagctgtgtattgaatgcatttaaaatagtgatagttgactttttaaaaaaataattgttaaatttaagatgcttaaagagtgtctcag 42791259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 8373043 - 8372990
Alignment:
Q  202 taatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    ||||||||||||||||||||||| |||| |||||||| | ||| ||||||||||    
T  8373043 taatagttgattttttaaaagaataattattaaatttaggatgtttaaagagtg 8372990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 38491300 - 38491216
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||| ||||||||||| ||||||| ||||| |||||||||| ||||||| | || ||||  ||||||||| || || ||||||||    
T  38491300 aaaaattgtgtattgaatgcattgtaaattgtaatagttgactttttaacataataattactaaatttgggattctgaaagagtg 38491216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 256
Target Start/End: Complemental strand, 45640621 - 45640541
Alignment:
Q  176 ttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    ||||||| ||| ||||||| ||||||||||| |||| ||||| |||||| | || |||||||||| |||||| || |||||    
T  45640621 ttgtgtaatgaatgcattgaaaattataataattgactttttgaaagaatagttcttaaatttgggatgctttaaaagtgt 45640541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 40460770 - 40460833
Alignment:
Q  191 attggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagt 254  Q
    |||||||| | ||||| ||||||||||||| ||| |||| |||||||| | |||||||||||||    
T  40460770 attggaaactgtaataattgattttttaaatgaataattattaaattttggatgcttaaagagt 40460833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 44829351 - 44829272
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaa 250  Q
    |||||||||||||||| || |||  ||||| ||||||||||  |||| |||||| ||||  ||||||||| |||||||||    
T  44829351 aaaagttgtgtattgaatgtattaaaaattgtaatagttgacctttttaaagaataattactaaatttgggatgcttaaa 44829272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 3982349 - 3982259
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    |||||||||||||| |||| | ||||||  |||||||||||||||| |||||  || || ||||  |||||||| |||  |||||||||||    
T  3982349 ttattaaaagttgtctattcaatgcattataaattataatagttgactttttctaaaaataattactaaatttgatatttttaaagagtgt 3982259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 26811259 - 26811317
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaatt 229  Q
    ||||||||| |||||  || |||||||||| |||||||| |||||||||||||| ||||    
T  26811259 aaaagttgtatattgtatgtattggaaattctaatagttaattttttaaaagaataatt 26811317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 32562375 - 32562465
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    |||| |||| ||||||||| | ||||||| ||||| |||||||||| ||||||||| || ||||  |||||||   || ||||||||||||    
T  32562375 ttataaaaaattgtgtattcactgcattgaaaattgtaatagttgaatttttaaaataataattactaaattttagattcttaaagagtgt 32562465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 280
Target Start/End: Original strand, 48022388 - 48022489
Alignment:
Q  179 tgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccgttaacaag 278  Q
    |||||||| ||||||| |||||  ||||||| | ||||||||| || ||||  ||||| ||| |||||||||||||    |||| |||| ||||||||||    
T  48022388 tgtattgaatgcattgaaaattgcaatagttaactttttaaaacaataattactaaatatgggatgcttaaagagtaccacaggggcactcgttaacaag 48022487  T
Q  279 ac 280  Q
    ||    
T  48022488 ac 48022489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 171 - 280
Target Start/End: Complemental strand, 28207703 - 28207594
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccg 270  Q
    |||||||||||||||| ||||||||||||| |||||||||| ||||||||||||  |||||||||||||| ||||||||||||||| || || |||| ||    
T  28207703 aaaagttgtgtattgaatgcattggaaattgtaatagttgactttttaaaagaattattgttaaatttgggatgcttaaagagtgtctcgggggcactcg 28207604  T
Q  271 ttaacaagac 280  Q
    ||||||||||    
T  28207603 ttaacaagac 28207594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 166 - 254
Target Start/End: Complemental strand, 33013129 - 33013041
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagt 254  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  33013129 ttatgaaaagttgtgtattgagtacattggaaattgtaatagttgactttttaaaagaataattgttaaatttggtatgcttaaagagt 33013041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 4384163 - 4384247
Alignment:
Q  172 aaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||  ||||||| |  ||||||||||||||    
T  4384163 aaagttgtgtattgaatgcattggaaattgtaatagttgattttttaaaagaataattactaaatttagggtgcttaaagagtgt 4384247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 168 - 268
Target Start/End: Original strand, 12684518 - 12684618
Alignment:
Q  168 attaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcac 267  Q
    |||||||||| |||| ||| |||||| |||||| |||||||||||| ||| |||||| |||| |||||||||| ||||||||||||||| || |||||||    
T  12684518 attaaaagttttgtaatgaatgcattagaaattgtaatagttgattctttgaaagaataattattaaatttggaatgcttaaagagtgtttcgggagcac 12684617  T
Q  268 c 268  Q
    |    
T  12684618 c 12684618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 13028202 - 13028124
Alignment:
Q  177 tgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||||||||||||||||| ||||| ||||| | ||||||||||||||| ||||| ||||||| | ||||||||||||||    
T  13028202 tgtgtattgagtgcattgaaaattgtaataatagattttttaaaagaataattgataaatttagaatgcttaaagagtg 13028124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 167871 - 167956
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    ||||||| |||| | | |||||||||||||||||||||||| |||||||||||| |||| |||||||||  || ||||||||||||    
T  167871 aaaagttatgtaataaatgcattggaaattataatagttgactttttaaaagaataatttttaaatttgagatacttaaagagtgt 167956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 33949572 - 33949661
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||| ||||||||||||||||||||||| |||||| |||||||||| ||||||||| || | ||  |||||||  |||||||||||||||    
T  33949572 ttatgaaaagttgtgtattgagtgcatttgaaattgtaatagttgaatttttaaaacaatacttactaaatttaatatgcttaaagagtg 33949661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 37813424 - 37813514
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttga-ttttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||| |||||||||||||| | ||||||||||||| |||| ||||| ||||||||||||| ||||  ||||||||| || |||||||||||    
T  37813424 ttatgaaaagttgtgtattcaatgcattggaaattgtaatggttgacttttttaaaagaataattactaaatttgggatccttaaagagtg 37813514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 27801253 - 27801338
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    |||||||||||| ||| ||||||| ||||| |||||||||| |||||||||||| ||||  ||||||| | ||| |||||||||||    
T  27801253 aaaagttgtgtaatgaatgcattgaaaattgtaatagttgactttttaaaagaataattactaaatttagaatgattaaagagtgt 27801338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 1369886 - 1369974
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatc 259  Q
    ||||||| | |||||| ||||||||||||| | |||||||| |||||||||||| ||||| ||||||| | ||||||||| | ||||||    
T  1369886 aaaagttatctattgaatgcattggaaattgtgatagttgactttttaaaagaataattgctaaatttaggatgcttaaataatgtatc 1369974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 16723225 - 16723306
Alignment:
Q  174 agttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||||||| |||| || |||| ||||| || |||||||||||||||||||| ||||   |||||||| ||||||||||||||    
T  16723225 agttgtgtgttgaatgtattgaaaattgtattagttgattttttaaaagaataattacaaaatttgggatgcttaaagagtg 16723306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 171 - 280
Target Start/End: Original strand, 42636393 - 42636502
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccg 270  Q
    |||||||||||||| | ||||||| ||||| |||||||||| |||||  || || ||||  ||||||||| ||||||||||||||   | ||||||| |     
T  42636393 aaaagttgtgtattaaatgcattgtaaattgtaatagttgacttttttgaataataattactaaatttgggatgcttaaagagtgccccgggagcactcc 42636492  T
Q  271 ttaacaagac 280  Q
    ||||||||||    
T  42636493 ttaacaagac 42636502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 2250414 - 2250356
Alignment:
Q  190 cattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgctta 248  Q
    ||||| |||||||||| ||||| |||||||||||| |||| |||||||||| |||||||    
T  2250414 cattgaaaattataatggttgactttttaaaagaataattattaaatttgggatgctta 2250356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 175 - 256
Target Start/End: Complemental strand, 9024563 - 9024482
Alignment:
Q  175 gttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    |||||||||| | |||||   ||||| |||||||||||||||| |||||| ||||  |||||||||| | ||||||||||||    
T  9024563 gttgtgtatttaatgcataaaaaattgtaatagttgattttttgaaagaataattactaaatttggttttcttaaagagtgt 9024482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 24695826 - 24695741
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    |||||||||||||| | |||||| |||||| |||||||||| ||||||||| || ||||  ||||||  | || ||||||||||||    
T  24695826 aaaagttgtgtattcactgcattagaaattgtaatagttgactttttaaaataataattactaaattctggattcttaaagagtgt 24695741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 35902010 - 35901945
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaat 236  Q
    ||||||| |||||||| ||||||||||||| ||||| |||| ||||||||| || |||| ||||||    
T  35902010 aaaagttctgtattgaatgcattggaaattgtaataattgactttttaaaaaaataattattaaat 35901945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 2258118 - 2258202
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||||||||||||| | | ||||  ||||| ||||  || | |||||||||||| |||| |||||||||| ||||||||||||||    
T  2258118 aaaagttgtgtattaaatacattaaaaattgtaatgattaactttttaaaagaataattattaaatttgggatgcttaaagagtg 2258202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 1135240 - 1135182
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaatt 229  Q
    ||||||||| |||||| | ||||| ||||| |||||||||| |||||||||||| ||||    
T  1135240 aaaagttgtatattgaatacattgaaaattgtaatagttgactttttaaaagaataatt 1135182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 3520835 - 3520893
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaatt 229  Q
    ||||||| |||||||| ||||||  ||| | ||||||||||||||||||||||| ||||    
T  3520835 aaaagttatgtattgaatgcattaaaaactgtaatagttgattttttaaaagaataatt 3520893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 2888764 - 2888825
Alignment:
Q  188 tgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaa 249  Q
    |||||||||||||||||||||| | ||||||||| || ||||  ||||| ||| ||||||||    
T  2888764 tgcattggaaattataatagttaactttttaaaaaaataattactaaatatgggatgcttaa 2888825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 3146098 - 3146037
Alignment:
Q  188 tgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaa 249  Q
    ||||||||||||| |||||||| | |||||||||||| ||||  ||||| ||| ||||||||    
T  3146098 tgcattggaaattgtaatagttaactttttaaaagaataattactaaatatgggatgcttaa 3146037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 5589022 - 5588981
Alignment:
Q  188 tgcattggaaattataatagttgattttttaaaagaacaatt 229  Q
    ||||||| |||||||||||||||| |||||||||||| ||||    
T  5589022 tgcattgaaaattataatagttgactttttaaaagaataatt 5588981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 116 - 255
Target Start/End: Original strand, 39320954 - 39321093
Alignment:
Q  116 ttaaggagtgtctttggagcattctttacgcattttaattagtnnnnnnnttattaaaagttgtgtattgagtgcattggaaattataatagttgatttt 215  Q
    |||| |||||||||||   || |||||| ||| ||||||||||       ||||||||||||||||||||| | ||||| ||||| |||||||||| |||    
T  39320954 ttaacgagtgtctttgagacactctttaagcactttaattagtaagttttttattaaaagttgtgtattgaatacattgaaaattgtaatagttgacttt 39321053  T
Q  216 ttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  39321054 ttaaaagaataattgttaaatttggtatgcttaaagagtg 39321093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 166 - 255
Target Start/End: Complemental strand, 35731371 - 35731282
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||| |||||||||||||| ||||||||||||||| |||||||||| |||||||||||| | ||||||||||||||||||||||||||||    
T  35731371 ttataaaaagttgtgtattaagtgcattggaaattgtaatagttgactttttaaaagaatagttgttaaatttggtatgcttaaagagtg 35731282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 3692961 - 3692883
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatg 244  Q
    |||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||    
T  3692961 ttatgaaaaattgtgtattgagtgcattggaaattgtaatagttgattttttaaaagaataattgctaaatttggtatg 3692883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 28770556 - 28770472
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||||||||||||||| ||||||||||||| |||||||||| |||| ||||||| ||||  ||| ||||| ||||||||||||||    
T  28770556 aaaagttgtgtattgaatgcattggaaattgtaatagttgacttttcaaaagaataattactaattttgggatgcttaaagagtg 28770472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 193 - 280
Target Start/End: Complemental strand, 44537398 - 44537311
Alignment:
Q  193 tggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccgttaacaagac 280  Q
    ||||||||||||||||||| |||||||||||| ||||  ||||| ||| |||||||||||||| |||||| |||| ||||||| ||||    
T  44537398 tggaaattataatagttgactttttaaaagaataattactaaatatgggatgcttaaagagtgcatcaggggcactcgttaacgagac 44537311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 171 - 280
Target Start/End: Complemental strand, 27123353 - 27123244
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccg 270  Q
    |||||||||||| | | ||||||||||||| |||||||||| ||||||||||||  |||  ||||||||| ||||||||||||||   | || |||| ||    
T  27123353 aaaagttgtgtacttaatgcattggaaattgtaatagttgactttttaaaagaatgattactaaatttgggatgcttaaagagtgccccgggggcactcg 27123254  T
Q  271 ttaacaagac 280  Q
    ||||||||||    
T  27123253 ttaacaagac 27123244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 279
Target Start/End: Complemental strand, 44592949 - 44592837
Alignment:
Q  167 tattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagca 266  Q
    |||||||||||||||||||| | ||||| ||||| |||||||| | |||||||||||| |||| |||||||| | ||  |||||||||||  ||| | ||    
T  44592949 tattaaaagttgtgtattgaatacattgaaaattgtaatagttaactttttaaaagaataattattaaattttgaatatttaaagagtgttccagaaaca 44592850  T
Q  267 cccgttaacaaga 279  Q
    | |||||||||||    
T  44592849 ctcgttaacaaga 44592837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 7653655 - 7653588
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaattt 238  Q
    |||||||||||| ||| || ||||||||||||||||||||| |||||||||||| | ||| |||||||    
T  7653655 aaaagttgtgtaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaattt 7653588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 27337781 - 27337692
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    |||| |||||||||||||| | || |||| ||| | |||||||||||||||| |||||| ||||||||||||||  || ||||||||||||    
T  27337781 ttatgaaaagttgtgtatttaatgtattgtaaactgtaatagttgatttttttaaagaataattgttaaatttgagat-cttaaagagtgt 27337692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 7968586 - 7968671
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    ||||||||||||| |||||||||  || |  ||||||||||||||||||||||| ||||| |||||||   ||||||||| |||||    
T  7968586 aaaagttgtgtatagagtgcattaaaagtggtaatagttgattttttaaaagaataattgctaaatttatgatgcttaaaaagtgt 7968671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 171 - 280
Target Start/End: Original strand, 28663166 - 28663273
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccg 270  Q
    |||| ||||||||||| ||||||| ||||| |||||||||| |||||||||||| ||||  |||| ||   ||||||||||||||  ||||| |||| ||    
T  28663166 aaaaattgtgtattgaatgcattgaaaattgtaatagttgactttttaaaagaataatt-ctaaagttatgatgcttaaagagtgcctcagg-gcactcg 28663263  T
Q  271 ttaacaagac 280  Q
    ||||||||||    
T  28663264 ttaacaagac 28663273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 171 - 280
Target Start/End: Complemental strand, 43234869 - 43234760
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccg 270  Q
    ||||||| |||||||| || | |||||||| |||||||| |||||||||||||| ||||  ||||| | | ||||||||||| |||  |  |||||| ||    
T  43234869 aaaagttatgtattgaatgtaatggaaattgtaatagtttattttttaaaagaataattactaaatataggatgcttaaagaatgtcccgagagcactcg 43234770  T
Q  271 ttaacaagac 280  Q
    ||||||||||    
T  43234769 ttaacaagac 43234760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 21727438 - 21727514
Alignment:
Q  176 ttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaaga 252  Q
    ||||||||||| || |||||||||| |||||||||| |||||||||||| ||||  |||||| |  |||||||||||    
T  21727438 ttgtgtattgaatgtattggaaattgtaatagttgactttttaaaagaataattactaaattggagatgcttaaaga 21727514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 32699804 - 32699863
Alignment:
Q  196 aaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    ||||| |||||||||||||||||||| || |||| |||||||||| ||| |||||||||||    
T  32699804 aaattgtaatagttgattttttaaaa-aataatttttaaatttgggatgattaaagagtgt 32699863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 42936085 - 42936028
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaatt 229  Q
    |||| ||||||||| | ||||||| ||||| ||||||||||||||||||||||| ||||    
T  42936085 aaaaattgtgtattaaatgcattg-aaattgtaatagttgattttttaaaagaataatt 42936028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 18801124 - 18801051
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttg 239  Q
    |||| |||||||||||||| | || |||| ||||| |||||||||| |||| ||||||  ||||| ||||||||    
T  18801124 ttatgaaaagttgtgtattcattgtattgaaaattgtaatagttgacttttgaaaagagtaattgctaaatttg 18801051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 29711539 - 29711587
Alignment:
Q  190 cattggaaattataatagttgattttttaaaagaacaattgttaaattt 238  Q
    ||||| |||||||||| |||||||||||||||||| ||||  |||||||    
T  29711539 cattgaaaattataattgttgattttttaaaagaaaaatttctaaattt 29711587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 43224114 - 43224198
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    ||||||||||||||   | ||||||||||| ||| |||||| |||||||||||| |||   ||| ||| | ||||||||||||||    
T  43224114 aaaagttgtgtattacatacattggaaattgtaacagttgactttttaaaagaataatatctaattttaggatgcttaaagagtg 43224198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 168 - 255
Target Start/End: Complemental strand, 1841065 - 1840978
Alignment:
Q  168 attaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||| ||||||||  |||||||||||||||    
T  1841065 attaaaagttgtgtattgaatgcattggaaattgtaatagttgattttttaaaagaataattattaaatttaatatgcttaaagagtg 1840978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 19293475 - 19293565
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    |||| ||||||||  |||||||||||| ||||||| |||||||| | ||||||||| || ||||||||||||| | |||||||||||||||    
T  19293475 ttatgaaaagttggttattgagtgcatcggaaattgtaatagttaactttttaaaataataattgttaaatttaggatgcttaaagagtgt 19293565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 28874470 - 28874394
Alignment:
Q  179 tgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||| ||||  ||| |||   ||||||||||||||    
T  28874470 tgtattgaatgcattggaaattataatagttgatttttcaaaagaataattactaattttatgatgcttaaagagtg 28874394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 2692457 - 2692542
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    |||||||||||||| | | ||||||||||| |||||||||| ||||||||| || ||||  ||||||| | || ||||||||||||    
T  2692457 aaaagttgtgtattcacttcattggaaattgtaatagttgactttttaaaataataattactaaattttggattcttaaagagtgt 2692542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 279
Target Start/End: Complemental strand, 9762881 - 9762774
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccg 270  Q
    |||||||||||| ||| || ||| |||||||||||| |||| |||||||||||| || |  |||||||   ||| ||||||||||| || || |||| ||    
T  9762881 aaaagttgtgtactgaatgtattagaaattataataattgactttttaaaagaa-aaatactaaatttaagatgtttaaagagtgtttcgggggcactcg 9762783  T
Q  271 ttaacaaga 279  Q
    |||||||||    
T  9762782 ttaacaaga 9762774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 11720925 - 11720989
Alignment:
Q  191 attggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||| ||||| |||||||||| || ||||||||| ||||||||||||| | ||| ||||||||||    
T  11720925 attgaaaattgtaatagttgacttcttaaaagaataattgttaaatttaggatgtttaaagagtg 11720989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 32823756 - 32823693
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaa 234  Q
    |||||||||||||||| ||||||| ||||| ||||| |||| |||| ||||||| |||| ||||    
T  32823756 aaaagttgtgtattgaatgcattgaaaattgtaataattgacttttcaaaagaataattattaa 32823693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 30801823 - 30801785
Alignment:
Q  168 attaaaagttgtgtattgagtgcattggaaattataata 206  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  30801823 attaaaagttgtgtattgaatgcattgaaaattataata 30801785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 31855133 - 31855083
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaa 221  Q
    |||| |||| |||||| ||||||||||||| |||||||||| |||||||||    
T  31855133 aaaaattgtatattgaatgcattggaaattgtaatagttgactttttaaaa 31855083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 26669306 - 26669391
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    ||||||| |||||| | | || || ||||| |||||||||| |||||||||||| |||| |||||| ||   ||||||||||||||    
T  26669306 aaaagttatgtattaaatacagtgaaaattgtaatagttgactttttaaaagaataattattaaatatgaagtgcttaaagagtgt 26669391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 30509358 - 30509286
Alignment:
Q  208 ttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggag-cacccgttaacaagac 280  Q
    |||||||||| |||||| ||||| | | ||||||||||||||||||||| || |||| ||| ||||||||||||    
T  30509358 ttgatttttttaaagaataattgcttattttggtatgcttaaagagtgt-tccggagacactcgttaacaagac 30509286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 3766356 - 3766272
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    ||||||| |||| ||| || |||  ||||| ||||| |||| |||||||||||| ||||   |||||||| ||||||||||||||    
T  3766356 aaaagttatgtaatgaatgtattataaattgtaataattgactttttaaaagaataatttccaaatttgggatgcttaaagagtg 3766272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 7421751 - 7421675
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgctt 247  Q
    |||||||||||||| | ||||||| ||||| ||||| |||| ||||||||  || ||||  ||||||||| ||||||    
T  7421751 aaaagttgtgtattaaatgcattgaaaattgtaatatttgactttttaaataaataattactaaatttggaatgctt 7421675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 171 - 292
Target Start/End: Original strand, 45900176 - 45900297
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccg 270  Q
    |||||||||||||||| ||||||||||||| | |||||||| ||| |||||||| ||||| ||||||| | ||||||||||||||  || || |||| ||    
T  45900176 aaaagttgtgtattgaatgcattggaaattgtgatagttgactttataaaagaataattgctaaatttaggatgcttaaagagtgcctcgggggcactcg 45900275  T
Q  271 ttaacaagacacattttaaaat 292  Q
    |||||||||| |||||||||||    
T  45900276 ttaacaagacccattttaaaat 45900297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 171 - 280
Target Start/End: Original strand, 7444412 - 7444522
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttga-ttttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcaccc 269  Q
    |||||||||||||||| ||||||| ||||| |||||||||| ||||||||||| | ||||  ||||||||| ||||||||| |||||||| ||||||| |    
T  7444412 aaaagttgtgtattgaatgcattgaaaattgtaatagttgacttttttaaaagtataattactaaatttgggatgcttaaaaagtgtatcgggagcactc 7444511  T
Q  270 gttaacaagac 280  Q
    |||||||||||    
T  7444512 gttaacaagac 7444522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 37138184 - 37138273
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||| | | |||||||||||    
T  37138184 ttatgaaaagttgtgtattgagtgcattggaaattataatagttgactttttaaaagaatagttgctaaatttgatttccttaaagagtg 37138273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 51834993 - 51834908
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    |||||||||||||| | |||||||||||||||||||||||| |||||||||||| ||||| ||||||| | |||||||||||||||    
T  51834993 aaaagttgtgtatttaatgcattggaaattataatagttgactttttaaaagaataattgctaaatttaggatgcttaaagagtgt 51834908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 31429356 - 31429280
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgctt 247  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||| |||||| ||| ||||||    
T  31429356 aaaagttgtgtattgaatgcattggaaattgtaatagttgattttttaaaagaataatttttaaatatggaatgctt 31429280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 169 - 256
Target Start/End: Complemental strand, 51736435 - 51736348
Alignment:
Q  169 ttaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    |||||||||||||||| | || |||| |||||||||||||||| |||||||||||| ||||| ||||||||| ||  |||||||||||    
T  51736435 ttaaaagttgtgtattcaatgtattgaaaattataatagttgactttttaaaagaataattgctaaatttggaatcattaaagagtgt 51736348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 7852571 - 7852656
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    |||||||||||||| | ||||||| ||||| |||||||| |||||||||||||| ||||  ||||||| | |||||||||||||||    
T  7852571 aaaagttgtgtattaaatgcattgaaaattgtaatagttaattttttaaaagaataattactaaatttaggatgcttaaagagtgt 7852656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 171 - 280
Target Start/End: Complemental strand, 8297950 - 8297841
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccg 270  Q
    |||| ||||||||||| ||||||||||||| ||| ||||||  ||||||||||| ||||  ||||||||| ||||||||||||||   | || |||| ||    
T  8297950 aaaaattgtgtattgaatgcattggaaattgtaacagttgacattttaaaagaataattactaaatttgggatgcttaaagagtgccccgggggcactcg 8297851  T
Q  271 ttaacaagac 280  Q
    ||||||||||    
T  8297850 ttaacaagac 8297841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 171 - 280
Target Start/End: Complemental strand, 49400691 - 49400583
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccg 270  Q
    |||||| ||||||| | | ||||||||||| ||||||||||||||||||||||| ||||  ||||||| | ||||||||| ||||  || ||||||| ||    
T  49400691 aaaagtcgtgtattaaatacattggaaattgtaatagttgattttttaaaagaataattactaaatttaggatgcttaaatagtg-ctctggagcactcg 49400593  T
Q  271 ttaacaagac 280  Q
    ||||||||||    
T  49400592 ttaacaagac 49400583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 50341894 - 50341971
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgctta 248  Q
    |||||||||||||||| ||| ||||||||| |||||||||| |||||||||||| ||||  ||||||||| |||||||    
T  50341894 aaaagttgtgtattgaatgcgttggaaattgtaatagttgactttttaaaagaataattactaaatttggaatgctta 50341971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 35777726 - 35777809
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagt 254  Q
    |||||||||||||||| |||||| |||||| |||||||| | |||||||||||| ||||  ||||||||| ||| |||||||||    
T  35777726 aaaagttgtgtattgaatgcattagaaattgtaatagttaactttttaaaagaataattactaaatttgggatggttaaagagt 35777809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 20394709 - 20394633
Alignment:
Q  179 tgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||||||| || |||||||||| |||||||| | |||||||||||| ||||  ||||||||| ||||||||||||||    
T  20394709 tgtattgaatgtattggaaattgtaatagttcactttttaaaagaataattactaaatttgggatgcttaaagagtg 20394633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 50427068 - 50426989
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaa 250  Q
    ||||||||||| |||| ||||||||||||| |||||||||| |||| ||||||| ||||  ||||||||  |||||||||    
T  50427068 aaaagttgtgtgttgattgcattggaaattgtaatagttgacttttcaaaagaataattactaaatttgagatgcttaaa 50426989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 25115285 - 25115375
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    |||| |||||||||||||| | ||||||||||||| |||||||| | ||||||||| || ||||  ||||||| | || ||||||||||||    
T  25115285 ttataaaaagttgtgtattcactgcattggaaattgtaatagttaactttttaaaataataattactaaattttggattcttaaagagtgt 25115375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 37383782 - 37383866
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    ||||||||| |||||| |||||||||| ||||||  ||||||||||| |||||| ||||  ||||||| | |||||||||||||||    
T  37383782 aaaagttgtatattgaatgcattggaagttataacggttgatttttt-aaagaataattactaaattttggatgcttaaagagtgt 37383866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 48337618 - 48337532
Alignment:
Q  188 tgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccgttaa 274  Q
    ||||||| ||||| |||||||||||||||||||  || ||||||||||||  | ||| ||||||||| | |||||| ||| ||||||    
T  48337618 tgcattgaaaattgtaatagttgattttttaaagaaataattgttaaattaaggatgtttaaagagtatctcaggaacactcgttaa 48337532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 53014233 - 53014283
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaa 221  Q
    |||||||||||||||| || |||||||||| |||||||| |||||||||||    
T  53014233 aaaagttgtgtattgaatgtattggaaattgtaatagttaattttttaaaa 53014283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 42223034 - 42222985
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaa 220  Q
    |||| ||||||||||| ||||||| ||||||||||||||| |||||||||    
T  42223034 aaaaattgtgtattgaatgcattgaaaattataatagttggttttttaaa 42222985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 27953068 - 27953151
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||||||||||||||| ||||||| ||||| |||||||| | ||||||||| || || |  ||||||||  ||||||||||||||    
T  27953068 aaaagttgtgtattgaatgcattgaaaattgtaatagttaactttttaaaataataa-tactaaatttgagatgcttaaagagtg 27953151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 34391734 - 34391801
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaattt 238  Q
    |||||||||||||||| ||||||||||||| |||||  ||| ||| |||||||| ||||  |||||||    
T  34391734 aaaagttgtgtattgattgcattggaaattgtaataactgactttataaaagaataattactaaattt 34391801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 43969207 - 43969262
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaa 221  Q
    |||| |||| |||| |||||||||||||| ||||| ||||||||||||||| ||||    
T  43969207 ttataaaaaattgtatattgagtgcattgaaaattgtaatagttgatttttaaaaa 43969262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 47995764 - 47995847
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagt 254  Q
    ||||||| |||||||| ||||||| ||||| ||||| || | |||||||||||  ||||  ||||||| | |||||||||||||    
T  47995764 aaaagttatgtattgaatgcattgaaaattgtaataattaactttttaaaagagtaattactaaatttagaatgcttaaagagt 47995847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 49084427 - 49084512
Alignment:
Q  171 aaaagttgtgtattgagtg-cattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||||||||||||||| |  ||||| ||||| |||||||||| |||||||||||| ||||  ||||||| | ||  ||||||||||    
T  49084427 aaaagttgtgtattgaatttcattgaaaattgtaatagttgactttttaaaagaataattactaaatttaggataattaaagagtg 49084512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 12618738 - 12618806
Alignment:
Q  188 tgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    ||||||| || |||||| | |||| ||||||||| || ||||  ||||||||| |||||||||||||||    
T  12618738 tgcattgaaatttataacatttgactttttaaaaaaataatttctaaatttggaatgcttaaagagtgt 12618806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 166 - 280
Target Start/End: Complemental strand, 15720151 - 15720037
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagc 265  Q
    |||| |||||||||||||| ||| ||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||| |||||||  || | | |    
T  15720151 ttatgaaaagttgtgtattaagttcattggaaattgtaatagttgactttttaaaagaataattgataaatttggtatgcttgaagagtgcttcggaaac 15720052  T
Q  266 acccgttaacaagac 280  Q
    || ||||||||||||    
T  15720051 actcgttaacaagac 15720037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 7719283 - 7719198
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    |||||||||||||||| |  |||||||||| ||||||||||||||||||||||| |||| |||||| |||||||||||||||||||    
T  7719283 aaaagttgtgtattgaatatattggaaattgtaatagttgattttttaaaagaataatttttaaatatggtatgcttaaagagtgt 7719198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 30501167 - 30501251
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||||||||||||||| || |||||||||| ||||| |||| |||||||||||| ||||  ||||||||| ||||||||||||||    
T  30501167 aaaagttgtgtattgaatgtattggaaattgtaataattgactttttaaaagaataattactaaatttgggatgcttaaagagtg 30501251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 30541510 - 30541594
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||||||||||||||| || |||||||||| ||||| |||| |||||||||||| ||||  ||||||||| ||||||||||||||    
T  30541510 aaaagttgtgtattgaatgtattggaaattgtaataattgactttttaaaagaataattactaaatttgggatgcttaaagagtg 30541594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 9276607 - 9276688
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaaga 252  Q
    ||||||| |||||||| ||||||| |||||||||||||||||||||||||| || ||||  ||||||||| |||||| ||||    
T  9276607 aaaagttatgtattgaatgcattgaaaattataatagttgattttttaaaaaaataattactaaatttgggatgcttgaaga 9276688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 16667319 - 16667403
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||| ||||||||||| || |||||||||| ||||| |||| |||||||||||| |||| |||||||||  ||||||||||||||    
T  16667319 aaaaattgtgtattgaatgtattggaaattgtaataattgactttttaaaagaataattattaaatttgtgatgcttaaagagtg 16667403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 30104883 - 30104799
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||||||||||||||| ||||||||||||| |||| ||||| ||||||||| || | ||  ||||||||| ||||||||||||||    
T  30104883 aaaagttgtgtattgaatgcattggaaattgtaattgttgactttttaaaaaaatagttactaaatttgggatgcttaaagagtg 30104799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 2918624 - 2918707
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagt 254  Q
    |||||||||||||| | ||||||||||||||||||||||||  |||| ||| || |||| |||||||||  |||||||||||||    
T  2918624 aaaagttgtgtattaaatgcattggaaattataatagttgacatttttaaaaaataattattaaatttgaaatgcttaaagagt 2918707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 116 - 277
Target Start/End: Complemental strand, 8221256 - 8221096
Alignment:
Q  116 ttaaggagtgtctttggagcattctttacgcattttaattagtnnnnnnnttattaaaagttgtgtattgagtgcattggaaattataatagttgatttt 215  Q
    |||| ||||||||  ||||||||||||| ||||||||| ||||       | || |||| ||||||||||| ||||||| || || |||||||||| |||    
T  8221256 ttaatgagtgtctccggagcattctttaagcattttaaatagtaagtttttaataaaaaattgtgtattgaatgcattgaaagttgtaatagttgacttt 8221157  T
Q  216 ttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccgttaacaa 277  Q
    |||| |||| ||||| ||||||| | ||| |||||||||||  | |||||||  ||||||||    
T  8221156 ttaagagaataattgctaaatttagaatg-ttaaagagtgttccgggagcacttgttaacaa 8221096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 18229629 - 18229712
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagt 254  Q
    |||| |||| |||||| || |||||||||| |||||||| | |||||||||||| ||||  ||||||||| |||||||||||||    
T  18229629 aaaaattgtttattgaatgtattggaaattgtaatagttaactttttaaaagaataattactaaatttgggatgcttaaagagt 18229712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 141914 - 141866
Alignment:
Q  208 ttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    |||| |||||||||||| ||||||| | |||||||||||||||||||||    
T  141914 ttgactttttaaaagaataattgtttattttggtatgcttaaagagtgt 141866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 13480093 - 13480013
Alignment:
Q  176 ttgtgtattgagtgcattggaaattataatagttga-ttttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    ||||||||||| ||||||| |||||||||||||| | |||||| ||| || ||||  ||||||||  ||||||||||||||    
T  13480093 ttgtgtattgaatgcattgaaaattataatagttaattttttttaaaaaataattactaaatttgaaatgcttaaagagtg 13480013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 3140893 - 3140826
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaattt 238  Q
    ||||||||| |||| | || |||| ||||| |||||||||| |||||||||||| |||| ||||||||    
T  3140893 aaaagttgtatattaaatgaattgaaaattgtaatagttgactttttaaaagaataattattaaattt 3140826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 34899163 - 34899248
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    ||||||| | |||| | |||||| |||||| ||||| |||  |||||||||||| ||||  || |||||| |||||||||||||||    
T  34899163 aaaagttatatattaaatgcattagaaattgtaataattgtctttttaaaagaataattactatatttgggatgcttaaagagtgt 34899248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 39558794 - 39558879
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    |||||| ||||||  | ||||||||||||| ||| |||||| |||||||| ||| ||||  ||||| ||| || ||||||||||||    
T  39558794 aaaagtcgtgtatcaaatgcattggaaattgtaacagttgaatttttaaatgaataattactaaatatggaatacttaaagagtgt 39558879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 8208258 - 8208174
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    ||||||| |||| ||| ||||||  ||||| ||||| |||| |||||||||||| |||| | ||||||   ||||||||||||||    
T  8208258 aaaagttatgtaatgaatgcattaaaaattgtaataattgactttttaaaagaataattttcaaatttaaaatgcttaaagagtg 8208174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 41048048 - 41047980
Alignment:
Q  188 tgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    ||||||||||||||||||| || |  |||||||| || ||||| |||||||   |||||||||||||||    
T  41048048 tgcattggaaattataataattaaccttttaaaaaaataattgctaaatttatgatgcttaaagagtgt 41047980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 1334911 - 1334995
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||| |||| |||||| ||||||||||||| |||||||||||||||| |||||| |||| |||||||||| ||||||||||||||    
T  1334911 aaaaattgtatattgaatgcattggaaattgtaatagttgatttttttaaagaataattattaaatttgggatgcttaaagagtg 1334995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 131 - 256
Target Start/End: Complemental strand, 41933250 - 41933125
Alignment:
Q  131 ggagcattctttacgcattttaattagtnnnnnnnttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattg 230  Q
    |||||| |||||| ||| ||||||||||       |||| ||||||||| || ||||||||||| ||||| |||||||||| |||||||||||| |||||    
T  41933250 ggagcactctttaagcactttaattagtaaattttttataaaaagttgtttactgagtgcattgaaaattgtaatagttgactttttaaaagaataattg 41933151  T
Q  231 ttaaatttggtatgcttaaagagtgt 256  Q
     |||||||| |||| ||||| |||||    
T  41933150 ctaaatttgatatgtttaaacagtgt 41933125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 171 - 280
Target Start/End: Complemental strand, 4762428 - 4762319
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccg 270  Q
    |||| ||||||||||| ||||||| |||||||||||||||| ||| ||||| || ||||  ||||||||| ||||||||| ||||   | ||||||| ||    
T  4762428 aaaaattgtgtattgaatgcattgaaaattataatagttgactttataaaataataattactaaatttgggatgcttaaacagtgatccgggagcactcg 4762329  T
Q  271 ttaacaagac 280  Q
    ||||||||||    
T  4762328 ttaacaagac 4762319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 19890216 - 19890295
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaa 250  Q
    |||||||||||||| | ||||||||||||| |||||||||| |||||||||||| ||||  ||||||| | |||||||||    
T  19890216 aaaagttgtgtattaaatgcattggaaattgtaatagttgactttttaaaagaataattactaaatttaggatgcttaaa 19890295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 40789777 - 40789703
Alignment:
Q  181 tattgagtgcattggaaattataatagttgatt-ttttaaaagaacaattgttaaatttggtatgcttaaagagt 254  Q
    ||||||||| |||| ||||||||||| |||||  ||||||||||| ||||||||||||||||||||| |||||||    
T  40789777 tattgagtgtattgaaaattataataattgataattttaaaagaataattgttaaatttggtatgctcaaagagt 40789703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 15505623 - 15505538
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    |||||||||||||||| || |||| |||||||||||||| | ||||| |||||| |||| |||||||||  || ||||||||||||    
T  15505623 aaaagttgtgtattgaatgtattgaaaattataatagtttactttttgaaagaataattattaaatttgaaatacttaaagagtgt 15505538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 280
Target Start/End: Original strand, 38533373 - 38533480
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccg 270  Q
    |||| ||||||||||| |||||| ||||||| ||||||||| | ||||||| || |||| |||||||||  ||||||||||||||||  ||| |||| ||    
T  38533373 aaaaattgtgtattgaatgcattagaaattacaatagttgactatttaaaataa-aattattaaatttgagatgcttaaagagtgtacgagg-gcactcg 38533470  T
Q  271 ttaacaagac 280  Q
    ||||||||||    
T  38533471 ttaacaagac 38533480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 9448981 - 9449064
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||||||||||||||| || |||| |||||||||||||||| |||||||||||| ||||  ||||||||   |||||||||||||    
T  9448981 aaaagttgtgtattgaatgtattgaaaattataatagttga-tttttaaaagaataattactaaatttgagttgcttaaagagtg 9449064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 31452372 - 31452454
Alignment:
Q  170 taaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaaga 252  Q
    ||||||||||||||||| ||||||| ||||| |||| ||||| |||||||||||| ||||  |||| |||| ||| |||||||    
T  31452372 taaaagttgtgtattgaatgcattgaaaattgtaattgttgactttttaaaagaataattactaaacttgggatgtttaaaga 31452454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 19514950 - 19514866
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    ||||||||| |||| | |||||||  ||||||||||||||| |||| ||||||| ||||||||||||| | || |||| ||||||    
T  19514950 aaaagttgtatattcattgcattgataattataatagttgacttttaaaaagaataattgttaaatttaggatccttacagagtg 19514866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 14295712 - 14295626
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaaga 252  Q
    |||| |||||||||||||| | ||||||| ||||| |||||||| |  ||||||||||| ||||  ||||||||| || ||||||||    
T  14295712 ttataaaaagttgtgtattcaatgcattgaaaattgtaatagttaaccttttaaaagaataattactaaatttgggattcttaaaga 14295626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 43617514 - 43617575
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgtt 232  Q
    |||||| ||||||| | ||| ||||||||||||||| |||||||||| |||||| |||||||    
T  43617514 aaaagtcgtgtatttaatgctttggaaattataataattgattttttgaaagaataattgtt 43617575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 9173728 - 9173808
Alignment:
Q  166 ttattaaaagttgtgtatt-gagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgc 245  Q
    |||| |||| ||||||||| || || |||| ||||| |||||||||||||||||||| || ||||| ||||||| ||||||    
T  9173728 ttatgaaaaattgtgtatttgattgtattgaaaattgtaatagttgattttttaaaaaaataattgctaaatttagtatgc 9173808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 31017335 - 31017418
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagt 254  Q
    |||||||||||||| | ||||||| |||||| |||| |||| ||||| |||||| ||||  ||||||||| || ||| ||||||    
T  31017335 aaaagttgtgtattaaatgcattgaaaattaaaatatttgacttttttaaagaataattactaaatttgggatacttgaagagt 31017418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 252
Target Start/End: Complemental strand, 37993212 - 37993076
Alignment:
Q  116 ttaaggagtgtctttggagcattctttacgcattttaattagtnnnnnnnttattaaaagttgtgtattgagtgcattggaaattataatagttgatttt 215  Q
    |||| |||||||| || |||||||||||  |||||||| ||||       | || |||| || |||||| | ||||||| ||||| ||||||||||||||    
T  37993212 ttaaagagtgtctctgaagcattctttaaacattttaaatagtaaatttttaataaaaaattatgtattaaatgcattgaaaattgtaatagttgatttt 37993113  T
Q  216 ttaaaagaacaattgttaaatttggtatgcttaaaga 252  Q
    || |||||| | || |||||||| | ||| |||||||    
T  37993112 ttgaaagaatagttattaaatttagaatgtttaaaga 37993076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 280
Target Start/End: Original strand, 11944895 - 11945009
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagc 265  Q
    |||| |||||||||||||| | ||||||| ||||| ||||||||||  ||||  || || ||||  |||| || | || |||||||||||| || ||| |    
T  11944895 ttatgaaaagttgtgtattcaatgcattgaaaattgtaatagttgacattttttaaaaataattactaaaattaggatccttaaagagtgtctctggaac 11944994  T
Q  266 acccgttaacaagac 280  Q
    || ||||||||||||    
T  11944995 actcgttaacaagac 11945009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 255
Target Start/End: Complemental strand, 13538480 - 13538391
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||| ||||||| |||||| | |||||||||||||  | || |||| ||||| |||||| |||| |  ||||| ||||||||||||||||    
T  13538480 ttatgaaaagttatgtattcaatgcattggaaattgaattatttgaattttttaaagaataattttctaatttagtatgcttaaagagtg 13538391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 255
Target Start/End: Complemental strand, 20064995 - 20064906
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||| |||| ||||||||| | | ||||| ||||| |||||||||| |||||||||||| ||||  || |||| | || |||||||||||    
T  20064995 ttatgaaaaattgtgtatttaatacattgaaaattgtaatagttgactttttaaaagaataattactatatttaggatccttaaagagtg 20064906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 38533896 - 38533980
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    |||| ||||||||||| |||||| ||||||| ||||||||| | ||||||| || ||||  ||||||||  |||||||||| ||||    
T  38533896 aaaaattgtgtattgaatgcattagaaattacaatagttgactatttaaaa-aataattactaaatttgagatgcttaaagggtgt 38533980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 39551878 - 39551966
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||| ||||||||| ||||||||| |||| ||||| || |||||||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  39551878 ttatgaaaagttgtttattgagtgtattgaaaattgta-tagttgattttttaaaagaataattgctaaatttggtatgcttaaatagtg 39551966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 139 - 257
Target Start/End: Complemental strand, 47639006 - 47638888
Alignment:
Q  139 ctttacgcattttaattagtnnnnnnnttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaattt 238  Q
    ||||| ||||||||||||||       |||| |||| ||||||||||||||||||  ||||| |||||||| | |||||||||| | ||| |||||||||    
T  47639006 ctttaagcattttaattagtaagttctttatgaaaaattgtgtattgagtgcattaaaaattgtaatagttaactttttaaaagcataatagttaaattt 47638907  T
Q  239 ggtatgcttaaagagtgta 257  Q
     ||||||||||||||||||    
T  47638906 agtatgcttaaagagtgta 47638888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 48180215 - 48180283
Alignment:
Q  188 tgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    ||||||||||||| |||||||||| |||||||||||| |||||||||||| || |||||||||||||||    
T  48180215 tgcattggaaattgtaatagttgactttttaaaagaataattgttaaattggggatgcttaaagagtgt 48180283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 45988253 - 45988321
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttgg 240  Q
    ||||||||||| || | |||||| |||||| ||||||||||||||||||||||| |||||| ||||||||    
T  45988253 aaaagttgtgtgttaa-tgcattagaaattgtaatagttgattttttaaaagaataattgtcaaatttgg 45988321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 171 - 280
Target Start/End: Original strand, 42846032 - 42846143
Alignment:
Q  171 aaaagttgtgtattgagtgca-ttggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcagga-gcacc 268  Q
    |||||||||||||||| |||| ||| |||||  ||||||||| ||||| |||||| ||||  ||||||| | |||||||||||||| ||| ||| ||||     
T  42846032 aaaagttgtgtattgaatgcaattgaaaattgaaatagttgactttttcaaagaataattactaaatttaggatgcttaaagagtgcatccggaggcact 42846131  T
Q  269 cgttaacaagac 280  Q
    || |||||||||    
T  42846132 cgctaacaagac 42846143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 52638180 - 52638270
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    |||| |||| ||||||||| | ||||||||||||| |||||||||  ||||||||| || ||||  ||||||| | || ||||||||||||    
T  52638180 ttataaaaaattgtgtattcactgcattggaaattgtaatagttggctttttaaaataataattactaaattttggattcttaaagagtgt 52638270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 49362400 - 49362465
Alignment:
Q  190 cattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    ||||||||||| |||||||| | |||||||||||| |||| |||||||||| ||| ||||| ||||    
T  49362400 cattggaaattgtaatagttaactttttaaaagaataattattaaatttgggatgtttaaaaagtg 49362465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 46547872 - 46547928
Alignment:
Q  234 aatttggtatgcttaaagagtgtatcaggagcacccgttaacaagacacattttaaa 290  Q
    |||||||||| |||||||||||| ||||  ||||||||||||||||| ||| |||||    
T  46547872 aatttggtatacttaaagagtgtctcagaggcacccgttaacaagactcatattaaa 46547928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 16663061 - 16663006
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaa 221  Q
    |||| |||||||||||||| | |||||||| |||| |||||||||| |||||||||    
T  16663061 ttataaaaagttgtgtattcactgcattggtaattgtaatagttgactttttaaaa 16663006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 51351356 - 51351277
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaa 250  Q
    |||| ||||||||| | || |||||||||||||||| |  | |||||||||||| |||| |||||||| | |||||||||    
T  51351356 aaaaattgtgtattaaatgtattggaaattataatactaaactttttaaaagaataattattaaatttagaatgcttaaa 51351277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 26900050 - 26900136
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttga-ttttttaaaagaacaattgttaa-atttggtatgcttaaagagtg 255  Q
    ||||||| |||| | | ||||||| ||||| |||||||||| ||||||||||||| |||| || | |||||| ||||||||||||||    
T  26900050 aaaagttatgtaataaatgcattgaaaattgtaatagttgacttttttaaaagaataatttttcacatttgggatgcttaaagagtg 26900136  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 22730530 - 22730571
Alignment:
Q  188 tgcattggaaattataatagttgattttttaaaagaacaatt 229  Q
    ||||||| |||||||||||||||| |||||||||||| ||||    
T  22730530 tgcattgaaaattataatagttgactttttaaaagaataatt 22730571  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 52249405 - 52249320
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    ||||||||| |||||| |  ||| || ||| |||||||| | |||||||||||| |||| |||||||| |||| |||||| |||||    
T  52249405 aaaagttgtatattgaatatattagagattgtaatagttaactttttaaaagaataattattaaattttgtatacttaaaaagtgt 52249320  T

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Target: scaffold0419 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 1136 - 1060
Alignment:
Q  179 tgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtg 255  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||| ||||  ||| |||   ||||||||||||||    
T  1136 tgtattgaatgcattggaaattataatagttgatttttcaaaagaataattactaattttatgatgcttaaagagtg 1060  T

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Target: scaffold1444 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 954 - 1026
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaattt 238  Q
    |||| ||||| |||||||| | | ||||| ||||| |||||||||| |||||||||||||||||| |||||||    
T  954 ttatgaaaagatgtgtattcaatacattgaaaattgtaatagttgactttttaaaagaacaattgctaaattt 1026  T

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Target: scaffold1444; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 1726 - 1784
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaa 224  Q
    |||| |||||||||| ||| | ||||||||||||| |||||||||  ||||||||||||    
T  1726 ttatgaaaagttgtgcattcaatgcattggaaattgtaatagttggctttttaaaagaa 1784  T

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Target: scaffold0204 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 25140 - 25054
Alignment:
Q  188 tgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgtatcaggagcacccgttaa 274  Q
    ||||||| ||||| |||||||||||||||||||  || ||||||||||||  | ||| ||||||||| | |||||| ||| ||||||    
T  25140 tgcattgaaaattgtaatagttgattttttaaagaaataattgttaaattaaggatgtttaaagagtatctcaggaacactcgttaa 25054  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 62560 - 62635
Alignment:
Q  179 tgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagt 254  Q
    |||||||| ||||||| ||||  |||||||||| |||||||||||| ||||  ||||| ||  |||||||||||||    
T  62560 tgtattgaatgcattgaaaatcgtaatagttgactttttaaaagaataattactaaatatgagatgcttaaagagt 62635  T

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Target: scaffold0268 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 20270 - 20328
Alignment:
Q  166 ttattaaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaa 224  Q
    |||| |||||||||||||| | |||||| |||||| |||||||| | ||||||||||||    
T  20270 ttatgaaaagttgtgtatttaatgcatttgaaattgtaatagttaactttttaaaagaa 20328  T

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Target: scaffold0119 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 1487 - 1402
Alignment:
Q  171 aaaagttgtgtattgagtgcattggaaattataatagttgattttttaaaagaacaattgttaaatttggtatgcttaaagagtgt 256  Q
    ||||||| |||||| | | || || ||||| |||||||||| |||||||||||| |||| |||||| ||   ||||||||||||||    
T  1487 aaaagttatgtattaaatacagtgaaaattgtaatagttgactttttaaaagaataattattaaatatgaagtgcttaaagagtgt 1402  T

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