View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1953_high_5 (Length: 364)
Name: NF1953_high_5
Description: NF1953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1953_high_5 |
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| [»] chr1 (10 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 32168071 - 32167725
Alignment:
| Q |
18 |
aatctggccattgtattgatgtacttttagggacagttttgtgtttgtttagtttatatatttgtgatttagaggtaacgataataaactcatcttcata |
117 |
Q |
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| T |
32168071 |
aatctggccattgtattgatgtgcttttagggacagttttgtgtttgtttagtttatatctttgtgatttagaggtaacgataataaactcatcttcata |
32167972 |
T |
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| Q |
118 |
atcgcaatttataccattattgacattacatggatgctattataataccacaggtcaatctttgtggccatgccacactagcagctgcacatacactatt |
217 |
Q |
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| T |
32167971 |
atcgcaatttataccattattgacattacatggatgctattataataccacaggtcaatctttgtggccatgccacactagcagctgcacatacactact |
32167872 |
T |
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| Q |
218 |
ttcatctggtttggtggacaagaatgctattgaatttgtgacacgatctggaattttaactgcgaagaggaccaatgtcactagtgcaccgaatttgcag |
317 |
Q |
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| T |
32167871 |
ttcatctggtttggtggacaagaatgctattgaatttgtgacacgatctggaattttaactgcgaagaggaccgatgtcactagtgcactgaatttgcag |
32167772 |
T |
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| Q |
318 |
aacagtgaagctccggttggattttatattgaattggattttcctgc |
364 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32167771 |
aacggtgaagctccggttggattttatattgaattggattttcctgc |
32167725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 135 - 277
Target Start/End: Complemental strand, 32165089 - 32164944
Alignment:
| Q |
135 |
tattgacattacatggatgctattataataccac---aggtcaatctttgtggccatgccacactagcagctgcacatacactattttcatctggtttgg |
231 |
Q |
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| T |
32165089 |
tattaacattatatggatcttattataatactactacaggttaatctttgtggccatgctacattagcagctgcacacacactgttttcatctggtttgg |
32164990 |
T |
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| Q |
232 |
tggacaagaatgctattgaatttgtgacacgatctggaattttaac |
277 |
Q |
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| T |
32164989 |
tggacaagaatgttattgaatttgtgacactgtctggagttttaac |
32164944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 166 - 261
Target Start/End: Original strand, 27359158 - 27359256
Alignment:
| Q |
166 |
cacaggtcaatctttgtggccatgccacactagcagctgcacatacactattttcatctggtttggtggacaagaatgct---attgaatttgtgacac |
261 |
Q |
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| T |
27359158 |
cacaggttgatctttgtggccatgccacaatagcagcttcacatgcactcttttcatctgggttggtggacaagaatgctacaattgaatttgtgacac |
27359256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 279
Target Start/End: Complemental strand, 27322173 - 27322061
Alignment:
| Q |
167 |
acaggtcaatctttgtggccatgccacactagcagctgcacatacactattttcatctggtttggtggacaagaatgctattgaatttgtgacacgatct |
266 |
Q |
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| T |
27322173 |
acaggttaatctttgtggccatgccacattggcagcctcacacatacttttttcatctgatttggtgaacaacagtgttattgaatttgtgacactatct |
27322074 |
T |
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| Q |
267 |
ggaattttaactg |
279 |
Q |
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||| ||||||||| |
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| T |
27322073 |
ggagttttaactg |
27322061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 279
Target Start/End: Complemental strand, 27348801 - 27348689
Alignment:
| Q |
167 |
acaggtcaatctttgtggccatgccacactagcagctgcacatacactattttcatctggtttggtggacaagaatgctattgaatttgtgacacgatct |
266 |
Q |
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|||||| ||||||||||||||||||||| | |||||| |||| | ||| |||||||||| ||||||| |||| | || |||||||||||||||| |||| |
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| T |
27348801 |
acaggttaatctttgtggccatgccacattggcagcttcacacatacttttttcatctgatttggtgaacaacagtgttattgaatttgtgacattatct |
27348702 |
T |
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| Q |
267 |
ggaattttaactg |
279 |
Q |
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| T |
27348701 |
ggagttttaactg |
27348689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 167 - 280
Target Start/End: Complemental strand, 32157315 - 32157199
Alignment:
| Q |
167 |
acaggtcaatctttgtggccatgccacactagcagctgcacatacactattttcatctggtttggtggacaagaatg---ctattgaatttgtgacacga |
263 |
Q |
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|||||| ||| |||||| |||||||||| |||||||| | ||| |||| ||| |||||||||| |||||||| |||| |||||||||||||||||| | |
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| T |
32157315 |
acaggttaatatttgtgcccatgccacattagcagcttctcatgcactctttgcatctggtttagtggacaacaatgttactattgaatttgtgacacta |
32157216 |
T |
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| Q |
264 |
tctggaattttaactgc |
280 |
Q |
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| T |
32157215 |
tctggaatgttaactgc |
32157199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 279
Target Start/End: Complemental strand, 27265494 - 27265389
Alignment:
| Q |
174 |
aatctttgtggccatgccacactagcagctgcacatacactattttcatctggtttggtggacaagaatgctattgaatttgtgacacgatctggaattt |
273 |
Q |
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||||||||||||||||||||| | ||||| |||| | ||| |||||||||| ||||||| |||| || |||| ||||||||||| ||||||| ||| |
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| T |
27265494 |
aatctttgtggccatgccacattggcagcctcacacatacttttttcatctgatttggtgaacaacggtgttattaaatttgtgacattatctggagttt |
27265395 |
T |
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| Q |
274 |
taactg |
279 |
Q |
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|||||| |
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| T |
27265394 |
taactg |
27265389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 364
Target Start/End: Complemental strand, 32164906 - 32164848
Alignment:
| Q |
306 |
ccgaatttgcagaacagtgaagctccggttggattttatattgaattggattttcctgc |
364 |
Q |
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| T |
32164906 |
ccgaatttgctgaatagtgaagctgcagctggattttatattgaaatggattttcctgc |
32164848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 364
Target Start/End: Complemental strand, 27265328 - 27265292
Alignment:
| Q |
328 |
ctccggttggattttatattgaattggattttcctgc |
364 |
Q |
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| T |
27265328 |
ctccggttggattttacattgagttggattttcctgc |
27265292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 364
Target Start/End: Complemental strand, 27348628 - 27348592
Alignment:
| Q |
328 |
ctccggttggattttatattgaattggattttcctgc |
364 |
Q |
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|||||||||||||||| ||||| |||||||||||||| |
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| T |
27348628 |
ctccggttggattttacattgagttggattttcctgc |
27348592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 174 - 280
Target Start/End: Original strand, 44291117 - 44291223
Alignment:
| Q |
174 |
aatctttgtggccatgccacactagcagctgcacatacactattttcatctggtttggtggacaagaatgctattgaatttgtgacacgatctggaattt |
273 |
Q |
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|||||||||||||| |||||| |||||||||||||| |||||||||||||| ||||||| | ||| |||||||||| |||||| ||||||||| | |
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| T |
44291117 |
aatctttgtggccacgccacattagcagctgcacatgtggctttttcatctggtttagtggacagggatgttattgaatttatgacacaatctggaatgt |
44291216 |
T |
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| Q |
274 |
taactgc |
280 |
Q |
| |
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||||||| |
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| T |
44291217 |
taactgc |
44291223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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