View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1953_high_7 (Length: 332)
Name: NF1953_high_7
Description: NF1953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1953_high_7 |
 | |
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| [»] chr1 (3 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] chr8 (6 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr5 (7 HSPs) |
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| [»] scaffold0027 (1 HSPs) |
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| [»] chr7 (5 HSPs) |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold0374 (2 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 181 - 332
Target Start/End: Original strand, 2965563 - 2965714
Alignment:
| Q |
181 |
agttgataaactatttcaccactacctctgcttcagtctcgtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgtttat |
280 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2965563 |
agttgataaactatttcaccgctacatctgcttcagtctcgtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgtttat |
2965662 |
T |
|
| Q |
281 |
aaggctctaggtagtcaaaacgctgcatttaatggtcacaaatgatcattta |
332 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2965663 |
aaggctctaggtaatcaaaacgctgcgtttaatggtcacaaatgatcattta |
2965714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 332
Target Start/End: Complemental strand, 2965835 - 2965769
Alignment:
| Q |
266 |
aaacgatgcgtttataaggctctaggtagtcaaaacgctgcatttaatggtcacaaatgatcattta |
332 |
Q |
| |
|
|||||||| |||| |||||| |||||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
2965835 |
aaacgatgtgtttcaaaggcttcaggtagtcaaaacgatgtgtttaatggtcacaaatgatcattta |
2965769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 332
Target Start/End: Complemental strand, 48352573 - 48352535
Alignment:
| Q |
294 |
gtcaaaacgctgcatttaatggtcacaaatgatcattta |
332 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||| |
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|
| T |
48352573 |
gtcaaaatgctacatttaatggtcacaaatgatcattta |
48352535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 220 - 332
Target Start/End: Original strand, 42115745 - 42115857
Alignment:
| Q |
220 |
cgtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgtttataaggctctaggtagtcaaaacgctgcatttaatggtcac |
319 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| | || | |||||||||||||||||| ||||||| ||||||||| || | ||| |||||||||||| |
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|
| T |
42115745 |
cgtttaactgatgctgatgtgggcattaagttgctgacttggatcaaaacgatgcgtttcaaaggctccaggtagtcagaatgttgcgtttaatggtcac |
42115844 |
T |
|
| Q |
320 |
aaatgatcattta |
332 |
Q |
| |
|
||||||||||||| |
|
|
| T |
42115845 |
aaatgatcattta |
42115857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 181 - 332
Target Start/End: Complemental strand, 44916312 - 44916159
Alignment:
| Q |
181 |
agttgataaactatttcaccactacctctgcttc-agtctc-gtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgttt |
278 |
Q |
| |
|
||||||||||||||||||| |||| || || | |||||| ||||||||||||||||||||| | |||||||||| || | |||| ||| ||||||||| |
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|
| T |
44916312 |
agttgataaactatttcactgttacccctactgccagtctccgtttaactgatgttgatgtggccgttaagttgttgactttgatcgaaatgatgcgttt |
44916213 |
T |
|
| Q |
279 |
ataaggctctaggtagtcaaaacgctgcatttaatggtcacaaatgatcattta |
332 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||| |||||||| |
|
|
| T |
44916212 |
caaaggctctaggtagtcaaaacactgcatttaatggtcataaaacatcattta |
44916159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 220 - 332
Target Start/End: Complemental strand, 52568147 - 52568038
Alignment:
| Q |
220 |
cgtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgtttataaggctctaggtagtcaaaacgctgcatttaatggtcac |
319 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||| || | |||||||| ||||||||| || |||||||| ||||||||||| | |||||||||||| |
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|
| T |
52568147 |
cgtttaaccgatgttgatgtagccattaagttg---acttggatcaaaatgatgcgttttaaaagctctagggtgtcaaaacgctacgtttaatggtcac |
52568051 |
T |
|
| Q |
320 |
aaatgatcattta |
332 |
Q |
| |
|
||||||||||||| |
|
|
| T |
52568050 |
aaatgatcattta |
52568038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 332
Target Start/End: Original strand, 52181891 - 52182000
Alignment:
| Q |
223 |
ttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgtttataaggctctaggtagtcaaaacgctgcatttaatggtcacaaa |
322 |
Q |
| |
|
|||| |||||||||||| | | |||||||||| || | |||||||| | ||| ||| || |||| ||| ||||||||||| | ||||||||||||||| |
|
|
| T |
52181891 |
ttaattgatgttgatgtagtcgttaagttgttgactttgatcaaaatgttgccttttaaaagctccagggtgtcaaaacgctacgtttaatggtcacaaa |
52181990 |
T |
|
| Q |
323 |
tgatcattta |
332 |
Q |
| |
|
|||||||||| |
|
|
| T |
52181991 |
tgatcattta |
52182000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 219 - 332
Target Start/End: Original strand, 34686582 - 34686695
Alignment:
| Q |
219 |
tcgtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgtttataaggctctaggtagtcaaaacgctgcatttaatggtca |
318 |
Q |
| |
|
|||||||||||||| |||||| | | |||||||| | || | |||||||| |||||||| |||||||||||||||||||| | || ||||||| ||| |
|
|
| T |
34686582 |
tcgtttaactgatgatgatgtagccgttaagttggtgacttgaatcaaaacaatgcgtttcaaaggctctaggtagtcaaaatgtcgcgtttaatgctca |
34686681 |
T |
|
| Q |
319 |
caaatgatcattta |
332 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34686682 |
caaatgatcattta |
34686695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 332
Target Start/End: Complemental strand, 23553828 - 23553717
Alignment:
| Q |
220 |
cgtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgtttataaggctctaggtagtcaaaacgctgcatttaatggtcac |
319 |
Q |
| |
|
|||||||||||||||||||| | | |||||||||| || | |||||||| |||| |||| ||| ||| ||| |||||||| || | |||||||||||| |
|
|
| T |
23553828 |
cgtttaactgatgttgatgtagtctttaagttgttgacttggatcaaaatgatgtttttaaaag-ctcgagggtgtcaaaacacttcgtttaatggtcac |
23553730 |
T |
|
| Q |
320 |
aaatgatcattta |
332 |
Q |
| |
|
||||||||||||| |
|
|
| T |
23553729 |
aaatgatcattta |
23553717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 13771572 - 13771638
Alignment:
| Q |
262 |
atcaaaacgatgcgtttataaggctctaggtagtcaaaacgctgcatttaatggtcacaaatgatca |
328 |
Q |
| |
|
||||||| ||||||||| |||||||||||| ||||||| | ||| |||||||||||||||||||| |
|
|
| T |
13771572 |
atcaaaatgatgcgtttcaaaggctctaggtggtcaaaatgttgcgcttaatggtcacaaatgatca |
13771638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 332
Target Start/End: Original strand, 5358714 - 5358867
Alignment:
| Q |
181 |
agttgataaactatttcaccactacctctgct-tcagtct-cgtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgttt |
278 |
Q |
| |
|
||||||||||||||||| | |||| ||||| ||| ||| ||||||||||||| | || ||||| || ||||| | || | ||||||||| ||| |||| |
|
|
| T |
5358714 |
agttgataaactatttcgctgttacccctgctgtcaatctccgtttaactgatgctaatatgggcgttgagttgctgacttggatcaaaacaatgtgttt |
5358813 |
T |
|
| Q |
279 |
ataaggctctaggtagtcaaaacgctgcatttaatggtcacaaatgatcattta |
332 |
Q |
| |
|
|||| | ||||||||||||||| ||| |||| || ||||||| ||||||||| |
|
|
| T |
5358814 |
caaaggttttaggtagtcaaaacgatgcgtttagtgctcacaaaagatcattta |
5358867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 330
Target Start/End: Complemental strand, 14871357 - 14871207
Alignment:
| Q |
181 |
agttgataaactatttcaccactacctctgct-tcagtctc-gtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgttt |
278 |
Q |
| |
|
|||||||||||||||| | | |||| ||||| |||||||| |||||| ||||| |||||| | | |||||||||| || | |||||||||||||| ||| |
|
|
| T |
14871357 |
agttgataaactatttaatcgttacc-ctgctgtcagtctccgtttaattgatgctgatgtagtcgttaagttgttgacttggatcaaaacgatgccttt |
14871259 |
T |
|
| Q |
279 |
ataaggctctaggtagtcaaaacgctgcatttaatggtcacaaatgatcatt |
330 |
Q |
| |
|
|| ||| ||| ||| |||| || | ||||||||||||||||||||||| |
|
|
| T |
14871258 |
taaaagcttcagggtgtcgaaactctacgtttaatggtcacaaatgatcatt |
14871207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 330
Target Start/End: Complemental strand, 30576661 - 30576510
Alignment:
| Q |
181 |
agttgataaactatttcaccactacctctgct-tcagtctc-gtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgttt |
278 |
Q |
| |
|
|||||||||||||||||||| |||| ||| | | |||||| ||||||||||||| ||||| | | |||||||||| || | ||||||||| ||| ||| |
|
|
| T |
30576661 |
agttgataaactatttcaccgttacccctgttgtgagtctccgtttaactgatgtcgatgtagccgttaagttgttgacttggatcaaaacattgccttt |
30576562 |
T |
|
| Q |
279 |
ataaggctctaggtagtcaaaacgctgcatttaatggtcacaaatgatcatt |
330 |
Q |
| |
|
|| |||| ||| ||||||||| | | |||||| |||||| ||||||||| |
|
|
| T |
30576561 |
taaaagctccagggtgtcaaaacgttacgtttaatcgtcacagatgatcatt |
30576510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 332
Target Start/End: Complemental strand, 36196496 - 36196343
Alignment:
| Q |
181 |
agttgataaactatttcaccactacctctgct-tcagtctc-gtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgttt |
278 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| |||||||| |||||||||||| |||| | | | |||||||||| || | |||||||| | ||| ||| |
|
|
| T |
36196496 |
agttgataaactatttcaccgttacccctgctgtcagtctccgtttaactgatgctgatatagccgttaagttgttgacttggatcaaaatgctgccttt |
36196397 |
T |
|
| Q |
279 |
ataaggctctaggtagtcaaaacgctgcatttaatggtcacaaatgatcattta |
332 |
Q |
| |
|
|| ||| ||| ||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
36196396 |
taaaaactcgagggtgtcaaaacgctacgtttaatggtcacaaatgatcattta |
36196343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 42116964 - 42117002
Alignment:
| Q |
294 |
gtcaaaacgctgcatttaatggtcacaaatgatcattta |
332 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
42116964 |
gtcaaaatgctgcatttaatagtcacaaatgatcattta |
42117002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 332
Target Start/End: Complemental strand, 32459806 - 32459694
Alignment:
| Q |
220 |
cgtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgtttataaggctctaggtagtcaaaacgctgcatttaatggtcac |
319 |
Q |
| |
|
|||||||||||| ||||||||| | |||| || |||| | |||| |||||||| |||| ||| |||| | |||||||||||||| | |||||||||||| |
|
|
| T |
32459806 |
cgtttaactgatattgatgtggccgttaaattactaacttggatcgaaacgatgtgtttctaatgctccaagtagtcaaaacgctacgtttaatggtcac |
32459707 |
T |
|
| Q |
320 |
aaatgatcattta |
332 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
32459706 |
aaaagatcattta |
32459694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 223 - 332
Target Start/End: Original strand, 35190080 - 35190189
Alignment:
| Q |
223 |
ttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgtttataaggctctaggtagtcaaaacgctgcatttaatggtcacaaa |
322 |
Q |
| |
|
||||||||||||||||| | | |||||||||| || | |||||||| | ||| ||| || |||||||| ||| ||||||| | ||||||||||||||| |
|
|
| T |
35190080 |
ttaactgatgttgatgtagtcgttaagttgttgacttggatcaaaatgttgcctttcaaaagctctagggtgtccaaacgctacgtttaatggtcacaaa |
35190179 |
T |
|
| Q |
323 |
tgatcattta |
332 |
Q |
| |
|
|||||||||| |
|
|
| T |
35190180 |
tgatcattta |
35190189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 332
Target Start/End: Complemental strand, 35891252 - 35891102
Alignment:
| Q |
182 |
gttgataaactatttcaccactacctctgct-tcagtc-tcgtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgttta |
279 |
Q |
| |
|
||||||||||||||||| | |||| ||||| |||||| ||||||||||||| ||||||||| ||||||||| || | ||||| || |||| ||||| |
|
|
| T |
35891252 |
gttgataaactatttcagcgttacccctgctgtcagtcatcgtttaactgatcttgatgtggttgataagttgttgactttgatcataatgatgtgttta |
35891153 |
T |
|
| Q |
280 |
taaggctctaggtagtcaaaacgctgcatttaatggtcacaaatgatcattta |
332 |
Q |
| |
|
|||||| ||| |||||||| | || || |||||||||||||||||||||| |
|
|
| T |
35891152 |
--aggctccagggtgtcaaaacaccgcgttcaatggtcacaaatgatcattta |
35891102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 26275688 - 26275773
Alignment:
| Q |
245 |
ttaagttgttaacatagatcaaaacgatgcgtttataaggctctaggtagtcaaaacgctgcatttaatggtcacaaatgatcatt |
330 |
Q |
| |
|
||||||||||||| |||||||||| ||||| ||| || |||||||| ||||||| | | | || | |||||||||||||||||| |
|
|
| T |
26275688 |
ttaagttgttaacttagatcaaaatgatgccttttaaaagctctaggatgtcaaaaagttacgttcagtggtcacaaatgatcatt |
26275773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 332
Target Start/End: Original strand, 32459530 - 32459643
Alignment:
| Q |
219 |
tcgtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgtttataaggctctaggtagtcaaaacgctgcatttaatggtca |
318 |
Q |
| |
|
|||||||| | |||||||| ||| | |||||||| | | |||||||||||| | | ||| ||||||| || |||||||| |||||||||||||||| |
|
|
| T |
32459530 |
tcgtttaattaatgttgatatggccgttaagttgctgccttagatcaaaacgctacattttaaaggctccagtgtgtcaaaactctgcatttaatggtca |
32459629 |
T |
|
| Q |
319 |
caaatgatcattta |
332 |
Q |
| |
|
||||| || ||||| |
|
|
| T |
32459630 |
caaataataattta |
32459643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 332
Target Start/End: Original strand, 35890898 - 35891051
Alignment:
| Q |
181 |
agttgataaactatttcaccactacctctgct-tcagtctc-gtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgttt |
278 |
Q |
| |
|
|||||||||||||||||||| || | ||| | |||||||| |||||||||||||| |||||| | |||||||||| || | |||||||| ||| |||| |
|
|
| T |
35890898 |
agttgataaactatttcaccgttatcgctgttgtcagtctccgtttaactgatgttaatgtggccgttaagttgttgacttgaatcaaaacaatgtgttt |
35890997 |
T |
|
| Q |
279 |
ataaggctctaggtagtcaaaacgctgcatttaatggtcacaaatgatcattta |
332 |
Q |
| |
|
|||||| | | |||||||||| | | ||| |||| |||||| |||||||| |
|
|
| T |
35890998 |
caaaggcttcaagcagtcaaaacgttacgtttcatgggcacaaaaaatcattta |
35891051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 18249195 - 18249243
Alignment:
| Q |
284 |
gctctaggtagtcaaaacgctgcatttaatggtcacaaatgatcattta |
332 |
Q |
| |
|
|||||||| ||||||||| | |||||||| |||||||||||||||||| |
|
|
| T |
18249195 |
gctctagggtgtcaaaacgttacatttaatagtcacaaatgatcattta |
18249243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 332
Target Start/End: Original strand, 9517 - 9670
Alignment:
| Q |
181 |
agttgataaactatttcaccactacctctgct-tcagtctc-gtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgttt |
278 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |||||||| |||||||| |||||||||| | |||||||||| || | |||||||| ||| ||| |
|
|
| T |
9517 |
agttgataaactatttcactgttacccctgctatcagtctccgtttaactaatgttgatgtagttgttaagttgttgactttgatcaaaatattgccttt |
9616 |
T |
|
| Q |
279 |
ataaggctctaggtagtcaaaacgctgcatttaatggtcacaaatgatcattta |
332 |
Q |
| |
|
|| |||| ||| ||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
9617 |
taaaagctcgagggtgtcaaaacgctacgtttaatggtcacaaatgatcattta |
9670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 332
Target Start/End: Complemental strand, 28256938 - 28256786
Alignment:
| Q |
181 |
agttgataaactatttcaccactacctctgct-tcagt-ctcgtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgttt |
278 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||||| | | |||| ||||| | |||| ||||| ||| ||| |
|
|
| T |
28256938 |
agttgataaattatttcaccgctacctctgctgtcagtattcgtttaactgatgttgatgtagtcgttaaattgttgatttagaacaaaatactgctttt |
28256839 |
T |
|
| Q |
279 |
ataaggctctaggtagtcaaaacgctgcatttaatggtcacaaatgatcattta |
332 |
Q |
| |
|
| || |||||||| ||||||| || | ||||||||||||||||||||||||| |
|
|
| T |
28256838 |
a-aaagctctagggtgtcaaaattctacgtttaatggtcacaaatgatcattta |
28256786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 332
Target Start/End: Original strand, 35214939 - 35215091
Alignment:
| Q |
181 |
agttgataaactatttcaccactacctctgct-tcagtctc-gtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgttt |
278 |
Q |
| |
|
|||||||||||||||||||| |||| ||| | |||||||| ||||||||||||||||||| | | || ||||||| || | |||||||| | ||| ||| |
|
|
| T |
35214939 |
agttgataaactatttcaccgttacccctgttgtcagtctccgtttaactgatgttgatgtagccgtttagttgttgacttggatcaaaatgctgctttt |
35215038 |
T |
|
| Q |
279 |
ataaggctctaggtagtcaaaacgctgcatttaatggtcacaaatgatcattta |
332 |
Q |
| |
|
| || |||| ||| ||||||| || | |||| |||||||||||||||||||| |
|
|
| T |
35215039 |
a-aaagctcgagggtgtcaaaatcctacgtttattggtcacaaatgatcattta |
35215091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 332
Target Start/End: Complemental strand, 5559612 - 5559467
Alignment:
| Q |
189 |
aactatttcaccactacctctgct-tcagtctc-gtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgtttataaggct |
286 |
Q |
| |
|
|||||||||||| |||| ||||| ||||| || |||||||||||| |||||| | | |||||||||| | | |||||||| | ||| ||| || ||| |
|
|
| T |
5559612 |
aactatttcaccgttacccctgctatcagtatccgtttaactgatgctgatgtagtcgttaagttgttgagtttgatcaaaatgctgccttttaaaagct |
5559513 |
T |
|
| Q |
287 |
ctaggtagtcaaaacgctgcatttaatggtcacaaatgatcattta |
332 |
Q |
| |
|
| ||| ||||||||||| | |||||||||||||||| |||||||| |
|
|
| T |
5559512 |
ccagggtgtcaaaacgctacgtttaatggtcacaaataatcattta |
5559467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 5805213 - 5805323
Alignment:
| Q |
222 |
tttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgtttataaggctctaggtagtcaaaacgctgcatttaatggtcacaa |
321 |
Q |
| |
|
||||| ||||| |||||||| | |||||||||| || | |||||||| | ||| ||| || | || ||| ||||||||||| |||||||||||||| |
|
|
| T |
5805213 |
tttaattgatgctgatgtggcctttaagttgttgacttggatcaaaatgctgcattttaaaagttcgagggtgtcaaaacgctatgtttaatggtcacaa |
5805312 |
T |
|
| Q |
322 |
atgatcattta |
332 |
Q |
| |
|
||||||||||| |
|
|
| T |
5805313 |
atgatcattta |
5805323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 332
Target Start/End: Complemental strand, 10620128 - 10620090
Alignment:
| Q |
294 |
gtcaaaacgctgcatttaatggtcacaaatgatcattta |
332 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
10620128 |
gtcaaaacgctacgtttaatggtcacaaatgatcattta |
10620090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 332
Target Start/End: Original strand, 21376698 - 21376851
Alignment:
| Q |
181 |
agttgataaactatttcaccactacctctgct-tcagtctc-gtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgttt |
278 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||| | | |||||||||| || | || |||| | || ||| |
|
|
| T |
21376698 |
agttgataaactatttcaccgttaccactgctgtcagtctccgtttaactgatgttgatgtagccgttaagttgttgacttgaattaaaatgttgtcttt |
21376797 |
T |
|
| Q |
279 |
ataaggctctaggtagtcaaaacgctgcatttaatggtcacaaatgatcattta |
332 |
Q |
| |
|
|| |||| | | ||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
21376798 |
taaaagctcgatggtgtcaaaacgctacgtttaatggtcacaaatgatcattta |
21376851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 332
Target Start/End: Original strand, 24707583 - 24707692
Alignment:
| Q |
223 |
ttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgtttataaggctctaggtagtcaaaacgctgcatttaatggtcacaaa |
322 |
Q |
| |
|
|||| |||||||||||| | | |||| ||||| | |||||||||| | ||| |||| || |||| ||| ||||||||||| ||||||||||||||||| |
|
|
| T |
24707583 |
ttaattgatgttgatgtagccgttaaattgttgatttagatcaaaatgttgcctttaaaaagctcgagggtgtcaaaacgctacatttaatggtcacaaa |
24707682 |
T |
|
| Q |
323 |
tgatcattta |
332 |
Q |
| |
|
| |||||||| |
|
|
| T |
24707683 |
taatcattta |
24707692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 332
Target Start/End: Original strand, 53783011 - 53783160
Alignment:
| Q |
185 |
gataaactatttcaccactacctctgct-tcagtctc-gtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgtttataa |
282 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||| || |||| |||||||||| | | |||||||||| | | |||||||| | ||| ||| || |
|
|
| T |
53783011 |
gataaactatttcaccgttacctctgctatcagtctctgtgtaacagatgttgatgaagtcgttaagttgttgatttggatcaaaatgctgcattttaaa |
53783110 |
T |
|
| Q |
283 |
ggctctaggtagtcaaaacgctgcatttaatggtcacaaatgatcattta |
332 |
Q |
| |
|
| | ||| ||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
53783111 |
agaccgagggtgtcaaaacgctacgtttaatggtcacaaatgatcattta |
53783160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 328
Target Start/End: Complemental strand, 21410218 - 21410151
Alignment:
| Q |
261 |
gatcaaaacgatgcgtttataaggctctaggtagtcaaaacgctgcatttaatggtcacaaatgatca |
328 |
Q |
| |
|
|||||||||||| |||| |||||| ||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21410218 |
gatcaaaacgatatgtttcaaaggcttcagggtgtcaaaacgctgcgtttaatggtcacaaatgatca |
21410151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0374 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0374
Description:
Target: scaffold0374; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 332
Target Start/End: Original strand, 16245 - 16396
Alignment:
| Q |
181 |
agttgataaactatttcaccactacctctgcttcagtctc-gtttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgttta |
279 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| ||||||| |||||||| ||| |||||||| | ||| |||| | || | ||||||||| | |||||| |
|
|
| T |
16245 |
agttgataaactatttcaccgttacccctgct-cagtctccgtttaactaatgatgatgtggtcgttaggttgctgacttcgatcaaaacaacgcgtttt |
16343 |
T |
|
| Q |
280 |
taaggctctaggtagtcaaaacgctgcatttaatggtcacaaatgatcattta |
332 |
Q |
| |
|
||| |||||| |||||||| ||| ||||||||||| ||||||||||||| |
|
|
| T |
16344 |
aaagtgtctagggtgtcaaaactttgcgtttaatggtcagaaatgatcattta |
16396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0374; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 16518 - 16447
Alignment:
| Q |
261 |
gatcaaaacgatgcgtttataaggctctaggtagtcaaaacgctgcatttaatggtcacaaatgatcattta |
332 |
Q |
| |
|
||||||||||||| |||| ||||||| ||||||||| |||| || |||||| |||||||||||||||||| |
|
|
| T |
16518 |
gatcaaaacgatgagtttcaaaggctccaggtagtcataacgttgtttttaatagtcacaaatgatcattta |
16447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 2839854 - 2839892
Alignment:
| Q |
294 |
gtcaaaacgctgcatttaatggtcacaaatgatcattta |
332 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2839854 |
gtcaaaacgctacatttaatggtcacaaatgatcattta |
2839892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 331
Target Start/End: Original strand, 10962914 - 10963022
Alignment:
| Q |
223 |
ttaactgatgttgatgtgggcattaagttgttaacatagatcaaaacgatgcgtttataaggctctaggtagtcaaaacgctgcatttaatggtcacaaa |
322 |
Q |
| |
|
|||||||||| |||||| | | |||||||||| || | |||||||| | || ||| || ||| |||| ||||||||||| | ||||||||||||||| |
|
|
| T |
10962914 |
ttaactgatgctgatgtagccgttaagttgttgacttggatcaaaatgctgttttttaaaagctttaggatgtcaaaacgctacgtttaatggtcacaaa |
10963013 |
T |
|
| Q |
323 |
tgatcattt |
331 |
Q |
| |
|
||||||||| |
|
|
| T |
10963014 |
tgatcattt |
10963022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 332
Target Start/End: Original strand, 10407460 - 10407530
Alignment:
| Q |
261 |
gatcaaaacgatgcgtttataaggctctaggtagtcaaaacgctgcatttaatggtcacaaatgatcattta |
332 |
Q |
| |
|
|||||||||||||| || | ||||||| ||||||||| |||| ||| |||||||||||||||| ||||||| |
|
|
| T |
10407460 |
gatcaaaacgatgctttca-aaggctcgaggtagtcagaacgttgcgtttaatggtcacaaatattcattta |
10407530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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