View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1953_high_9 (Length: 224)

Name: NF1953_high_9
Description: NF1953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1953_high_9
NF1953_high_9
[»] chr2 (4 HSPs)
chr2 (5-208)||(11462150-11462353)
chr2 (66-207)||(11472335-11472476)
chr2 (66-207)||(11484998-11485139)
chr2 (61-207)||(11478727-11478873)
[»] chr1 (1 HSPs)
chr1 (13-207)||(21546432-21546626)
[»] scaffold0083 (1 HSPs)
scaffold0083 (22-207)||(47101-47286)
[»] chr4 (5 HSPs)
chr4 (103-207)||(38238961-38239065)
chr4 (109-207)||(38243935-38244033)
chr4 (109-207)||(38215048-38215146)
chr4 (103-173)||(38254192-38254262)
chr4 (103-207)||(38221081-38221185)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 11462353 - 11462150
Alignment:
Q  5 tgtcgaagaatatcatcttggcataatccattatttctcaccataataatatctgtttggttattgtttgtcacatttttaggttgttggtattttagaa 104  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11462353 tgtccaagaatatcatcttggcataatccattatttctcaccataataatatctgtttggttattgtttgtcacatttttaggttgttggtattttagaa 11462254  T
Q  105 caatccaatggtgaagataagtttcttggagaggtacagaattccctgattcatctactagttcagcattaaaacttttgagtgcaatatgaccccttgg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11462253 caatccaatggtgaagataagtttcttggagaggtacagaattccctgattcatctactagttcagcattaaaacttttgagtgcaatatgaccccttgg 11462154  T
Q  205 aaat 208  Q
    ||||    
T  11462153 aaat 11462150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 11472476 - 11472335
Alignment:
Q  66 tattgtttgtcacatttttaggttgttggtattttagaacaatccaatggtgaagataagtttcttggagaggtacagaattccctgattcatctactag 165  Q
    ||||||||||||||||||||||||| |||||| ||  |||| |||||||||| ||||||||||  ||||||||||| ||||||||||||||||  ||||     
T  11472476 tattgtttgtcacatttttaggttggtggtatcttgtaacagtccaatggtgtagataagtttgatggagaggtactgaattccctgattcattaactac 11472377  T
Q  166 ttcagcattaaaacttttgagtgcaatatgaccccttggaaa 207  Q
    |||||||   ||||| || |||| ||||||||| ||||||||    
T  11472376 ttcagcaaagaaactcttaagtgaaatatgacctcttggaaa 11472335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 11485139 - 11484998
Alignment:
Q  66 tattgtttgtcacatttttaggttgttggtattttagaacaatccaatggtgaagataagtttcttggagaggtacagaattccctgattcatctactag 165  Q
    ||||||||| ||||||||||||||| || ||| ||| |||||||||||| || ||||||||||  ||||||||||| ||||||||||||||||  ||||     
T  11485139 tattgtttgccacatttttaggttggtgatatcttacaacaatccaatgatgtagataagtttgatggagaggtactgaattccctgattcattaactac 11485040  T
Q  166 ttcagcattaaaacttttgagtgcaatatgaccccttggaaa 207  Q
    |||||||   ||||| ||||||| ||||||||| ||||||||    
T  11485039 ttcagcaaagaaactcttgagtgaaatatgacctcttggaaa 11484998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 207
Target Start/End: Complemental strand, 11478873 - 11478727
Alignment:
Q  61 ttggttattgtttgtcacatttttaggttgttggtattttagaacaatccaatggtgaagataagtttcttggagaggtacagaattccctgattcatct 160  Q
    |||| ||||||||||||||||||||||||| |||||| | | ||||| ||||||||| ||||||||||  ||||||||||  |||| ||||||||||||     
T  11478873 ttggctattgtttgtcacatttttaggttggtggtatctcacaacaacccaatggtgtagataagtttgatggagaggtattgaatgccctgattcatca 11478774  T
Q  161 actagttcagcattaaaacttttgagtgcaatatgaccccttggaaa 207  Q
    |||| |||||||   ||| |||||| || ||||||||| ||||||||    
T  11478773 actacttcagcaaagaaatttttgactgaaatatgaccacttggaaa 11478727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 21546626 - 21546432
Alignment:
Q  13 aatatcatcttggcataatccattatttctcaccataataatatctgtttggttattgtttgtcacatttttaggttgttggtattttagaacaatccaa 112  Q
    |||||| |||||||| || |||||||||||    | ||||||| ||| |||| ||||   |||||||||||||||||| |||||| ||| ||||||||||    
T  21546626 aatatcctcttggcaaaagccattatttctttggaaaataatacctgattggctatttggtgtcacatttttaggttggtggtatcttataacaatccaa 21546527  T
Q  113 tggtgaagataagtttcttggagaggtacagaattccctgattcatctactagttcagcattaaaacttttgagtgcaatatgaccccttggaaa 207  Q
    ||||| ||||||||||  |  ||||||| |||||||||||  ||||| ||||| |||||||| ||||| ||||||| ||||||||| ||||||||    
T  21546526 tggtgtagataagtttgataaagaggtatagaattccctgcatcatcaactagctcagcattgaaactcttgagtgaaatatgacctcttggaaa 21546432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 47286 - 47101
Alignment:
Q  22 ttggcataatccattatttctcaccataataatatctgtttggttattgtttgtcacatttttaggttgttggtattttagaacaatccaatggtgaaga 121  Q
    |||||| || |||| |||||| || ||||||||| ||| |||  |||| | ||||||||||||||||||||||||| | | ||||  ||| ||||| |||    
T  47286 ttggcaaaagccatcatttcttacaataataatacctgattgcctattttgtgtcacatttttaggttgttggtatctaacaacagcccagtggtgtaga 47187  T
Q  122 taagtttcttggagaggtacagaattccctgattcatctactagttcagcattaaaacttttgagtgcaatatgaccccttggaaa 207  Q
    |||||||  || |||||||||||||| |||| |||||| |||||||||||||| ||||| ||||||| |||||| || ||||||||    
T  47186 taagtttgatgaagaggtacagaatttcctgcttcatcaactagttcagcattgaaactcttgagtgaaatatggcctcttggaaa 47101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 103 - 207
Target Start/End: Original strand, 38238961 - 38239065
Alignment:
Q  103 aacaatccaatggtgaagataagtttcttggagaggtacagaattccctgattcatctactagttcagcattaaaacttttgagtgcaatatgacccctt 202  Q
    ||||| |||||| || ||||||||||| ||||||||||||| |||||||||||| || |||| ||||||||| ||||| |||||||| | |||||| |||    
T  38238961 aacaagccaatgatggagataagtttcatggagaggtacaggattccctgattcgtcaactacttcagcattgaaactcttgagtgctacatgacctctt 38239060  T
Q  203 ggaaa 207  Q
    |||||    
T  38239061 ggaaa 38239065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 207
Target Start/End: Original strand, 38243935 - 38244033
Alignment:
Q  109 ccaatggtgaagataagtttcttggagaggtacagaattccctgattcatctactagttcagcattaaaacttttgagtgcaatatgaccccttggaaa 207  Q
    |||||| || ||||||||||| |||||||||| || ||| ||   |||||| |||| ||||||||| ||||| ||||||||||||||||| ||||||||    
T  38243935 ccaatgatggagataagtttcatggagaggtataggattaccaacttcatcaactacttcagcattgaaactcttgagtgcaatatgacctcttggaaa 38244033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 207
Target Start/End: Original strand, 38215048 - 38215146
Alignment:
Q  109 ccaatggtgaagataagtttcttggagaggtacagaattccctgattcatctactagttcagcattaaaacttttgagtgcaatatgaccccttggaaa 207  Q
    |||||| |||||||||||||| ||||| |||| || ||| ||   |||||| || | ||||||||| ||||| |||||||| | |||||| ||||||||    
T  38215048 ccaatgatgaagataagtttcatggaggggtataggattaccatcttcatcaacaacttcagcattgaaactcttgagtgctacatgacctcttggaaa 38215146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 38254192 - 38254262
Alignment:
Q  103 aacaatccaatggtgaagataagtttcttggagaggtacagaattccctgattcatctactagttcagcat 173  Q
    ||||| |||||| || ||||||||||| |||||||||| || ||| || |||||||| |||| ||||||||    
T  38254192 aacaacccaatgatggagataagtttcatggagaggtataggatttccagattcatcaactacttcagcat 38254262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 207
Target Start/End: Original strand, 38221081 - 38221185
Alignment:
Q  103 aacaatccaatggtgaagataagtttcttggagaggtacagaattccctgattcatctactagttcagcattaaaacttttgagtgcaatatgacccctt 202  Q
    ||||| |||||| |||||||||||||| ||||| |||| || ||| ||   |||||| |||| ||||||||  ||||| |||| ||| | |||||| |||    
T  38221081 aacaacccaatgatgaagataagtttcatggaggggtataggattaccatcttcatcaactacttcagcatggaaactcttgattgctacatgacctctt 38221180  T
Q  203 ggaaa 207  Q
    |||||    
T  38221181 ggaaa 38221185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University