View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1953_low_10 (Length: 224)
Name: NF1953_low_10
Description: NF1953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1953_low_10 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 11462353 - 11462150
Alignment:
| Q |
5 |
tgtcgaagaatatcatcttggcataatccattatttctcaccataataatatctgtttggttattgtttgtcacatttttaggttgttggtattttagaa |
104 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11462353 |
tgtccaagaatatcatcttggcataatccattatttctcaccataataatatctgtttggttattgtttgtcacatttttaggttgttggtattttagaa |
11462254 |
T |
|
| Q |
105 |
caatccaatggtgaagataagtttcttggagaggtacagaattccctgattcatctactagttcagcattaaaacttttgagtgcaatatgaccccttgg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11462253 |
caatccaatggtgaagataagtttcttggagaggtacagaattccctgattcatctactagttcagcattaaaacttttgagtgcaatatgaccccttgg |
11462154 |
T |
|
| Q |
205 |
aaat |
208 |
Q |
| |
|
|||| |
|
|
| T |
11462153 |
aaat |
11462150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 11472476 - 11472335
Alignment:
| Q |
66 |
tattgtttgtcacatttttaggttgttggtattttagaacaatccaatggtgaagataagtttcttggagaggtacagaattccctgattcatctactag |
165 |
Q |
| |
|
||||||||||||||||||||||||| |||||| || |||| |||||||||| |||||||||| ||||||||||| |||||||||||||||| |||| |
|
|
| T |
11472476 |
tattgtttgtcacatttttaggttggtggtatcttgtaacagtccaatggtgtagataagtttgatggagaggtactgaattccctgattcattaactac |
11472377 |
T |
|
| Q |
166 |
ttcagcattaaaacttttgagtgcaatatgaccccttggaaa |
207 |
Q |
| |
|
||||||| ||||| || |||| ||||||||| |||||||| |
|
|
| T |
11472376 |
ttcagcaaagaaactcttaagtgaaatatgacctcttggaaa |
11472335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 11485139 - 11484998
Alignment:
| Q |
66 |
tattgtttgtcacatttttaggttgttggtattttagaacaatccaatggtgaagataagtttcttggagaggtacagaattccctgattcatctactag |
165 |
Q |
| |
|
||||||||| ||||||||||||||| || ||| ||| |||||||||||| || |||||||||| ||||||||||| |||||||||||||||| |||| |
|
|
| T |
11485139 |
tattgtttgccacatttttaggttggtgatatcttacaacaatccaatgatgtagataagtttgatggagaggtactgaattccctgattcattaactac |
11485040 |
T |
|
| Q |
166 |
ttcagcattaaaacttttgagtgcaatatgaccccttggaaa |
207 |
Q |
| |
|
||||||| ||||| ||||||| ||||||||| |||||||| |
|
|
| T |
11485039 |
ttcagcaaagaaactcttgagtgaaatatgacctcttggaaa |
11484998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 207
Target Start/End: Complemental strand, 11478873 - 11478727
Alignment:
| Q |
61 |
ttggttattgtttgtcacatttttaggttgttggtattttagaacaatccaatggtgaagataagtttcttggagaggtacagaattccctgattcatct |
160 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||| | | ||||| ||||||||| |||||||||| |||||||||| |||| |||||||||||| |
|
|
| T |
11478873 |
ttggctattgtttgtcacatttttaggttggtggtatctcacaacaacccaatggtgtagataagtttgatggagaggtattgaatgccctgattcatca |
11478774 |
T |
|
| Q |
161 |
actagttcagcattaaaacttttgagtgcaatatgaccccttggaaa |
207 |
Q |
| |
|
|||| ||||||| ||| |||||| || ||||||||| |||||||| |
|
|
| T |
11478773 |
actacttcagcaaagaaatttttgactgaaatatgaccacttggaaa |
11478727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 21546626 - 21546432
Alignment:
| Q |
13 |
aatatcatcttggcataatccattatttctcaccataataatatctgtttggttattgtttgtcacatttttaggttgttggtattttagaacaatccaa |
112 |
Q |
| |
|
|||||| |||||||| || ||||||||||| | ||||||| ||| |||| |||| |||||||||||||||||| |||||| ||| |||||||||| |
|
|
| T |
21546626 |
aatatcctcttggcaaaagccattatttctttggaaaataatacctgattggctatttggtgtcacatttttaggttggtggtatcttataacaatccaa |
21546527 |
T |
|
| Q |
113 |
tggtgaagataagtttcttggagaggtacagaattccctgattcatctactagttcagcattaaaacttttgagtgcaatatgaccccttggaaa |
207 |
Q |
| |
|
||||| |||||||||| | ||||||| ||||||||||| ||||| ||||| |||||||| ||||| ||||||| ||||||||| |||||||| |
|
|
| T |
21546526 |
tggtgtagataagtttgataaagaggtatagaattccctgcatcatcaactagctcagcattgaaactcttgagtgaaatatgacctcttggaaa |
21546432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 47286 - 47101
Alignment:
| Q |
22 |
ttggcataatccattatttctcaccataataatatctgtttggttattgtttgtcacatttttaggttgttggtattttagaacaatccaatggtgaaga |
121 |
Q |
| |
|
|||||| || |||| |||||| || ||||||||| ||| ||| |||| | ||||||||||||||||||||||||| | | |||| ||| ||||| ||| |
|
|
| T |
47286 |
ttggcaaaagccatcatttcttacaataataatacctgattgcctattttgtgtcacatttttaggttgttggtatctaacaacagcccagtggtgtaga |
47187 |
T |
|
| Q |
122 |
taagtttcttggagaggtacagaattccctgattcatctactagttcagcattaaaacttttgagtgcaatatgaccccttggaaa |
207 |
Q |
| |
|
||||||| || |||||||||||||| |||| |||||| |||||||||||||| ||||| ||||||| |||||| || |||||||| |
|
|
| T |
47186 |
taagtttgatgaagaggtacagaatttcctgcttcatcaactagttcagcattgaaactcttgagtgaaatatggcctcttggaaa |
47101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 103 - 207
Target Start/End: Original strand, 38238961 - 38239065
Alignment:
| Q |
103 |
aacaatccaatggtgaagataagtttcttggagaggtacagaattccctgattcatctactagttcagcattaaaacttttgagtgcaatatgacccctt |
202 |
Q |
| |
|
||||| |||||| || ||||||||||| ||||||||||||| |||||||||||| || |||| ||||||||| ||||| |||||||| | |||||| ||| |
|
|
| T |
38238961 |
aacaagccaatgatggagataagtttcatggagaggtacaggattccctgattcgtcaactacttcagcattgaaactcttgagtgctacatgacctctt |
38239060 |
T |
|
| Q |
203 |
ggaaa |
207 |
Q |
| |
|
||||| |
|
|
| T |
38239061 |
ggaaa |
38239065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 207
Target Start/End: Original strand, 38243935 - 38244033
Alignment:
| Q |
109 |
ccaatggtgaagataagtttcttggagaggtacagaattccctgattcatctactagttcagcattaaaacttttgagtgcaatatgaccccttggaaa |
207 |
Q |
| |
|
|||||| || ||||||||||| |||||||||| || ||| || |||||| |||| ||||||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
38243935 |
ccaatgatggagataagtttcatggagaggtataggattaccaacttcatcaactacttcagcattgaaactcttgagtgcaatatgacctcttggaaa |
38244033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 207
Target Start/End: Original strand, 38215048 - 38215146
Alignment:
| Q |
109 |
ccaatggtgaagataagtttcttggagaggtacagaattccctgattcatctactagttcagcattaaaacttttgagtgcaatatgaccccttggaaa |
207 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||| || ||| || |||||| || | ||||||||| ||||| |||||||| | |||||| |||||||| |
|
|
| T |
38215048 |
ccaatgatgaagataagtttcatggaggggtataggattaccatcttcatcaacaacttcagcattgaaactcttgagtgctacatgacctcttggaaa |
38215146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 38254192 - 38254262
Alignment:
| Q |
103 |
aacaatccaatggtgaagataagtttcttggagaggtacagaattccctgattcatctactagttcagcat |
173 |
Q |
| |
|
||||| |||||| || ||||||||||| |||||||||| || ||| || |||||||| |||| |||||||| |
|
|
| T |
38254192 |
aacaacccaatgatggagataagtttcatggagaggtataggatttccagattcatcaactacttcagcat |
38254262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 207
Target Start/End: Original strand, 38221081 - 38221185
Alignment:
| Q |
103 |
aacaatccaatggtgaagataagtttcttggagaggtacagaattccctgattcatctactagttcagcattaaaacttttgagtgcaatatgacccctt |
202 |
Q |
| |
|
||||| |||||| |||||||||||||| ||||| |||| || ||| || |||||| |||| |||||||| ||||| |||| ||| | |||||| ||| |
|
|
| T |
38221081 |
aacaacccaatgatgaagataagtttcatggaggggtataggattaccatcttcatcaactacttcagcatggaaactcttgattgctacatgacctctt |
38221180 |
T |
|
| Q |
203 |
ggaaa |
207 |
Q |
| |
|
||||| |
|
|
| T |
38221181 |
ggaaa |
38221185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University