View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1953_low_2 (Length: 600)
Name: NF1953_low_2
Description: NF1953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1953_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 20613509 - 20613780
Alignment:
| Q |
19 |
acaatcctatcaactggtatcagcaacatacacctccgatcattcaagattcatcaagaatcatatgcatcattctcttgatcattgattagaagaagat |
118 |
Q |
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| T |
20613509 |
acaatcctatcaactggtatcagcaacatacacctccggtcattcaagattcatcaagaatcatatgcatcattctcttgatcattgattagaagaagat |
20613608 |
T |
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| Q |
119 |
ggcaagtgcaattgatcaacttggaaacagttttagaggaaagatgaaagtctttttggttttcaaacctgtaaattgaggatattattgtctaggcaga |
218 |
Q |
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| T |
20613609 |
ggcaagtgcaattgatcaacttggaaacagttttagaggaaagatgaaagtctttttggttttcaaacctgtaaattgaggatattattgtcttggcaga |
20613708 |
T |
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| Q |
219 |
tacttgacaacatatggaaaacaaaatacttacaattcctacttgatcttagtcaaggcagaagtagagatg |
290 |
Q |
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| T |
20613709 |
tacttgacaacatttggaaaagaaaatacttaccattcctacttgatcataatcaaggcagaagtagagatg |
20613780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 289 - 583
Target Start/End: Original strand, 20613838 - 20614131
Alignment:
| Q |
289 |
tggcagaggcgcggttgttgcaactactggagtagcggtttgcactagagaagatcataatcgaggaatctatgggatttcatatacatgttattgaact |
388 |
Q |
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| T |
20613838 |
tggcagaggcgcggttgttgcaactattggagtagcagtttgcactagagaagatcataatcgaggaatctatgggatttcatatacacgttattgaact |
20613937 |
T |
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| Q |
389 |
agggtagaattgggattgagatttatattccataacagagagagtgtaagagattattcacaatgctttaaagcttattttttattctctgattgttgaa |
488 |
Q |
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| T |
20613938 |
agggtagaattgggattgagatttatgttccataacagagagagtgtaagagattattcacaa-gctttaaagcttgttttttattttctgatcgttgaa |
20614036 |
T |
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| Q |
489 |
tattacattgaattgagactttaatctgtaaggtatataactaaaactaactttataagtttgttacaaggatattgttatgctacacctatact |
583 |
Q |
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| T |
20614037 |
tattacattgaattgagtttttaatctgtaagctatataactaaaactaactttataagtttgttacaaggatagtgttatgctacacctatact |
20614131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 161
Target Start/End: Original strand, 30117178 - 30117265
Alignment:
| Q |
71 |
atcaagaatcatatgcatcattctcttgatcattgattagaagaagatggcaagtgcaattgatcaacttggaaacagttttagaggaaag |
161 |
Q |
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| T |
30117178 |
atcaagaatcatttgcatccctcacttgctcattgattagaagatga---caagtactatggatcaacttggaaacagttttggaggaaag |
30117265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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