View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1953_low_4 (Length: 557)
Name: NF1953_low_4
Description: NF1953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1953_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 547
Target Start/End: Complemental strand, 8813481 - 8812953
Alignment:
| Q |
18 |
atcttaaacacgacatttaagcattttgacacaccataagtaaagaaatcgtgctattaacttgaatcatcaaaataatatcttcaaattcaatttttat |
117 |
Q |
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| T |
8813481 |
atcttaaacacgacatttaagcattttgacacaccataagtaaagaaatcgtgctattaact-gaatcatcaaaataatatcttcaaattcaatttttat |
8813383 |
T |
|
| Q |
118 |
ttgaaaccaagatcaaatcnnnnnnnnnnnnnntatgttgataaggtcattcattagttccagctgtattgaaaaataagagtgaagacaaagcaagttg |
217 |
Q |
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| T |
8813382 |
ttgaaaccaagatcaaatcaaaaaacaaaaaaatatgttgataaggtcattcattagttccagctgtattgaaaaataagagtgaagaaaaaggaagttg |
8813283 |
T |
|
| Q |
218 |
aacatgagagaatatccgacacttgataaatctggtgcattctttaataataagtgcttgagtattcgctttagtgaggattcatgtttttagaggctac |
317 |
Q |
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| T |
8813282 |
aacatgagagaatatccgacacttgataaatctggtgcattctttaataataagtgcttaagtattcgctttagtgaggattcatgtttttagaggctac |
8813183 |
T |
|
| Q |
318 |
tattatttatttgcttcaattgattgaccttggctgggtgtttcctctgtgccttctgctaggtaccagcatatactaggagcagtttgaaattcaattc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8813182 |
tattatttatttgcttcaattgattgaccttggctgggtgtttcctctgtgccttctgctaggtaccagcatatactaggagcagattgaaattcaattc |
8813083 |
T |
|
| Q |
418 |
aacaatgaagatcaccagatatatagcacaaattatgattggtctcttcgcgttaagcaaaatatagagaaattctcgagtgaagttggcgaagatcatt |
517 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8813082 |
aacaatgaagatcaccagatatttaacacaaattatgattggtctcttagcgttaagcaaaatatagagaaattctcgagtgaagttggcgaagatcatt |
8812983 |
T |
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| Q |
518 |
ggaccatgtatattgattatagacttcatc |
547 |
Q |
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| T |
8812982 |
ggaccatgtatattgattatagacttcatc |
8812953 |
T |
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