View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1953_low_6 (Length: 336)
Name: NF1953_low_6
Description: NF1953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1953_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 138 - 331
Target Start/End: Original strand, 32156977 - 32157170
Alignment:
| Q |
138 |
gaattattaggaattacaagtaagtcatcttgaatctgtgtcctctttatatcaattatggaagctccatccaatgcttgagaaatgatcgaagtgtcgt |
237 |
Q |
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| T |
32156977 |
gaattattaggaattacaagtaagtcatcttgaatttgtgtcctctttatatcaattatggaagctccatccaatgcttgagaaatgagccaagtgtcgt |
32157076 |
T |
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| Q |
238 |
cgaatttgaactctgtgatagggtcagcaggaaaatccaattcaatataagatacatccttagctttaccattttgcaaattcttcttctcact |
331 |
Q |
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| T |
32157077 |
cgaatttgaactctgtgatagggtcagcaggaaaatccaattcaatataagatacatccttggctttaccattttgcaaattcttcttatcact |
32157170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 32156816 - 32156930
Alignment:
| Q |
16 |
acaacaacctaggagaaataataagcttcataatgttctatatgcacatattgcaaaaaatattcaatctgttttttcaaatacattttcaaaaacttca |
115 |
Q |
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| T |
32156816 |
acaacaacctaggagaaataataagcttcataatgttctatatgcacatattgcaaaaaatattcaatctgttttttcaaatacattttcaaaaacttca |
32156915 |
T |
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| Q |
116 |
aataacatcttctct |
130 |
Q |
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| T |
32156916 |
aataacatcttctct |
32156930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 286
Target Start/End: Complemental strand, 27359498 - 27359355
Alignment:
| Q |
143 |
attaggaattacaagtaagtcatcttgaatctgtgtcctctttatatcaattatggaagctccatccaatgcttgagaaatgatcgaagtgtcgtcgaat |
242 |
Q |
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| T |
27359498 |
attaggaattacaagtatgttatcttgaatcagtgtcctctttatatcaattatagaagcaccacccaatgcttcagaaatgagtgaagtatcatcaaaa |
27359399 |
T |
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| Q |
243 |
ttgaactctgtgatagggtcagcaggaaaatccaattcaatata |
286 |
Q |
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| T |
27359398 |
ttgagttcagtaatagggtccactggaaaatccaattctatata |
27359355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 320
Target Start/End: Original strand, 32167637 - 32167781
Alignment:
| Q |
176 |
tgtcctctttatatcaattatggaagctccatccaatgcttgagaaatgatcgaagtgtcgtcgaatttgaactctgtgatagggtcagcaggaaaatcc |
275 |
Q |
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|||||||||||||||||| |||||||| |||| ||||||| |||||||| |||||||| | | ||||| |||| ||||||||||||||||||||| |
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| T |
32167637 |
tgtcctctttatatcaataatggaagcaccattcaatgctccagaaatgagtgaagtgtcattagaattgaattctgcaatagggtcagcaggaaaatcc |
32167736 |
T |
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| Q |
276 |
aattcaatataagatacatccttagctttaccattttgcaaattc |
320 |
Q |
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| T |
32167737 |
aattcaatataaaatccaaccggagcttcaccgttctgcaaattc |
32167781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 27348471 - 27348539
Alignment:
| Q |
146 |
aggaattacaagtaagtcatcttgaatctgtgtcctctttatatcaattatggaagctccatccaatgc |
214 |
Q |
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| T |
27348471 |
aggaattacaagtaaatcatctgcaaattctgtcctcttcatatcaataatggaagcaccattcaatgc |
27348539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 303
Target Start/End: Complemental strand, 44291441 - 44291283
Alignment:
| Q |
145 |
taggaattacaagtaagtcatcttgaatctgtgtcctctttatatcaattatggaagctccatccaatgcttgagaaatgatcgaagtgtcgtcgaattt |
244 |
Q |
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|||||||||||| |||||||||||||||| ||||||||| | ||||| |||||||| || |||| || |||||| | ||| | || || ||||| |
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| T |
44291441 |
taggaattacaatcaagtcatcttgaatctctgtcctcttcacatcaacaatggaagcctcactcaatactccagaaataagtgaaatatcatcaaattt |
44291342 |
T |
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| Q |
245 |
gaactctgtgatagggtcagcaggaaaatccaattcaatataagatacatccttagctt |
303 |
Q |
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| |||| || ||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
44291341 |
tagttctgaaattgggtcagcaggaaaatccaattcaacataaaatacatccttagctt |
44291283 |
T |
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