View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1953_low_9 (Length: 234)

Name: NF1953_low_9
Description: NF1953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1953_low_9
NF1953_low_9
[»] chr5 (1 HSPs)
chr5 (17-222)||(32225898-32226103)
[»] chr8 (1 HSPs)
chr8 (16-59)||(33373764-33373807)
[»] chr7 (1 HSPs)
chr7 (16-59)||(40187648-40187691)
[»] chr3 (2 HSPs)
chr3 (18-59)||(7464505-7464546)
chr3 (16-61)||(42401436-42401481)
[»] chr1 (2 HSPs)
chr1 (18-59)||(33153894-33153935)
chr1 (19-59)||(30678828-30678868)
[»] scaffold1063 (1 HSPs)
scaffold1063 (15-59)||(1071-1115)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 32225898 - 32226103
Alignment:
Q  17 agaccttacatatggtatgaattgtccctaccaactgagttaaacacgaggacgcacgtagcaaaatctctaaagaaactaacttgattttacccaattt 116  Q
    ||||||||||||||||||||||| || ||||||| ||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  32225898 agaccttacatatggtatgaattatctctaccaattgaattaaacacgaggacgcatgtagcaaaatctttaaagaaactaacttgattttacccaattt 32225997  T
Q  117 taaagaaatttaccccttttcgatagttttaactttaaacaattttagaaactttcatctctatgtttgtttgtcttgatttagtttttcaattttgttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32225998 taaagaaatttaccccttttcgatagttttaactttaaacaattttagaaactttcatctctatgtttgtttgtcttgatttagtttttcaattttgttt 32226097  T
Q  217 ggttca 222  Q
    ||||||    
T  32226098 ggttca 32226103  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 33373764 - 33373807
Alignment:
Q  16 cagaccttacatatggtatgaattgtccctaccaactgagttaa 59  Q
    ||||||||||||||  |||||||||||| |||||||||||||||    
T  33373764 cagaccttacatatattatgaattgtccataccaactgagttaa 33373807  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 40187648 - 40187691
Alignment:
Q  16 cagaccttacatatggtatgaattgtccctaccaactgagttaa 59  Q
    ||||||||||||||  |||| |||||||||||||||||||||||    
T  40187648 cagaccttacatatattatgcattgtccctaccaactgagttaa 40187691  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 7464505 - 7464546
Alignment:
Q  18 gaccttacatatggtatgaattgtccctaccaactgagttaa 59  Q
    ||||||||||||  |||| |||||||||||||||||||||||    
T  7464505 gaccttacatatattatgcattgtccctaccaactgagttaa 7464546  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 42401481 - 42401436
Alignment:
Q  16 cagaccttacatatggtatgaattgtccctaccaactgagttaaac 61  Q
    |||||||| |||||  |||| |||||||||||||||||||||||||    
T  42401481 cagaccttgcatatactatgcattgtccctaccaactgagttaaac 42401436  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 33153894 - 33153935
Alignment:
Q  18 gaccttacatatggtatgaattgtccctaccaactgagttaa 59  Q
    ||||||||||||  |||| |||||||||||||||||||||||    
T  33153894 gaccttacatatattatgcattgtccctaccaactgagttaa 33153935  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 30678828 - 30678868
Alignment:
Q  19 accttacatatggtatgaattgtccctaccaactgagttaa 59  Q
    |||||||||||  |||| |||||||||||||||||||||||    
T  30678828 accttacatatattatgcattgtccctaccaactgagttaa 30678868  T

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Target: scaffold1063 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 1071 - 1115
Alignment:
Q  15 tcagaccttacatatggtatgaattgtccctaccaactgagttaa 59  Q
    |||||||||||||||  |||| ||||||||||| |||||||||||    
T  1071 tcagaccttacatatattatgcattgtccctactaactgagttaa 1115  T

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