View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19540_low_1 (Length: 575)
Name: NF19540_low_1
Description: NF19540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19540_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 13 - 559
Target Start/End: Original strand, 39115273 - 39115837
Alignment:
| Q |
13 |
agcagagatgagtggttgtggtttaggactgtggttgaacattagcttattaattattcattaggttgcattatatttgtcaccatgggccattcacttc |
112 |
Q |
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| T |
39115273 |
agcaaagatgagtggttgtggtttaggactgtggttgaacattagcttattaattattcattaggttgcattatatttgtcaccatgggccattcacttc |
39115372 |
T |
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| Q |
113 |
acatttgtataat--------------gtgacagtagatctctatattagaccactataggctagcaatggacttccacttgtgtgcaactttgtctttg |
198 |
Q |
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| T |
39115373 |
acatttgtataatttgatttgaataatgtgacagtagatctctatattagaccactataggctagcaatggacttccacttgtgtgcaactttgtctttg |
39115472 |
T |
|
| Q |
199 |
gtgtctgtgatagcgtttacaattgacatataggagataatgagttaggtttctgttgtattctgttacacagttagcacatttttatt----ctgttgt |
294 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
39115473 |
gtgtctgtgatagcgtttataattgacatataggagataatgagttaggtttctgttgtattctgttacacagttagcacatttttatttattccgttgt |
39115572 |
T |
|
| Q |
295 |
atacttgtaacacactcaaatttatctattaaatacatgagatagttgaatatccttaaggaaggagtgttattatgaaattattttgtctgttccttcc |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
39115573 |
atacttgtaacacactcaaatttatctattaaatacatgagatagttgaatatccttaaggaaggagtgttattatgaaattattttgtttgttacttcc |
39115672 |
T |
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| Q |
395 |
tttgattaatgatgcttctttgtgttaaggttttatatccttgttagtttatgattatttggattttcatttatattatagaggaaccttatatttcatt |
494 |
Q |
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| T |
39115673 |
tttgattaatgatgcttctttgtgttaaggttttatatccttgttagcttatgattatttggattttcatttatattatagaggaaccttatatttcatt |
39115772 |
T |
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| Q |
495 |
ctctacattatttgaaatttcggcaaggcgatcgaagagatgtggcggcaaggtgtggcaaagag |
559 |
Q |
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| T |
39115773 |
ctctacattatttgaaatttcggcaaggcgatcgaagagatgtggcggcaaggtgtggcaaagag |
39115837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 115 - 352
Target Start/End: Complemental strand, 38617217 - 38616960
Alignment:
| Q |
115 |
atttgtataatgtgacagtagatctctatattagaccactataggctagcaatggacttccacttgtgtgcaactttgtctttggtgtctgtgatagcg- |
213 |
Q |
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| T |
38617217 |
atttgaataatgtgaaagtagatctctatattagaccactataggctagcaatggacttccacttgagtgcaactttgtctttcgtgtctgtgatagagc |
38617118 |
T |
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| Q |
214 |
--tttacaattgacatataggagataatgagttaggtttctgttgtattctgttacacagttagcacatt-----------------tttattctgttgt |
294 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38617117 |
taattacaattgacatataggcgataatgagttaggtttctcttgtattctgttacacagttagcacatttttattacagttatatatttattctgttgt |
38617018 |
T |
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| Q |
295 |
atacttgtaacacactcaaatttatctattaaatacatgagatagttgaatatcctta |
352 |
Q |
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|||||||||||||||||| |||||| |||| ||| ||||||||||||||||||||||| |
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| T |
38617017 |
atacttgtaacacactcatatttatttattcaattcatgagatagttgaatatcctta |
38616960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 352 - 523
Target Start/End: Complemental strand, 38616247 - 38616077
Alignment:
| Q |
352 |
aaggaaggagtgttattatgaaattattttgtctgttccttcctttgattaatgatgcttctttgtgttaaggttttatatccttgttagtttatgatta |
451 |
Q |
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|||||||||||||||||| ||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38616247 |
aaggaaggagtgttattacgaaattattttgt-tgttacttcctttgatcaatgatgcttctttgtgttaaggttttatatcattgttagtttatgatta |
38616149 |
T |
|
| Q |
452 |
tttggattttcatttatattatagaggaaccttatatttcattctctacattatttgaaatttcggcaaggc |
523 |
Q |
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|||||||||||||||||| | |||||||||| |||||||| |||||||||||||||| | |||||||||||| |
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| T |
38616148 |
tttggattttcatttatagtctagaggaaccatatatttccttctctacattatttggattttcggcaaggc |
38616077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 385 - 451
Target Start/End: Complemental strand, 17228761 - 17228695
Alignment:
| Q |
385 |
tgttccttcctttgattaatgatgcttctttgtgttaaggttttatatccttgttagtttatgatta |
451 |
Q |
| |
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| T |
17228761 |
tgttacttccttcgatcaatgatgcttctttgtgttaagattttgtatccttgttagattatgatta |
17228695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 453
Target Start/End: Complemental strand, 19536529 - 19536466
Alignment:
| Q |
390 |
cttcctttgattaatgatgcttctttgtgttaaggttttatatccttgttagtttatgattatt |
453 |
Q |
| |
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||||||| ||| ||||||||||||||||||| || |||| |||||||||||| ||||||||||| |
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| T |
19536529 |
cttccttcgatcaatgatgcttctttgtgttgagattttgtatccttgttagattatgattatt |
19536466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 385 - 451
Target Start/End: Complemental strand, 197401 - 197335
Alignment:
| Q |
385 |
tgttccttcctttgattaatgatgcttctttgtgttaaggttttatatccttgttagtttatgatta |
451 |
Q |
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| T |
197401 |
tgttacttccttcgatcaatgatgcttctttgtgttaagattttgtatcctggttagattatgatta |
197335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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