View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19540_low_5 (Length: 402)

Name: NF19540_low_5
Description: NF19540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19540_low_5
NF19540_low_5
[»] chr1 (9 HSPs)
chr1 (188-392)||(44613651-44613855)
chr1 (188-392)||(44794483-44794687)
chr1 (161-392)||(35900025-35900256)
chr1 (186-392)||(17810647-17810853)
chr1 (191-392)||(44145915-44146119)
chr1 (17-114)||(44794376-44794473)
chr1 (17-102)||(44613877-44613962)
chr1 (243-392)||(11543479-11543628)
chr1 (17-60)||(44146250-44146293)
[»] scaffold0017 (3 HSPs)
scaffold0017 (17-392)||(181549-181921)
scaffold0017 (186-392)||(170462-170668)
scaffold0017 (17-68)||(170783-170834)
[»] scaffold0061 (2 HSPs)
scaffold0061 (186-392)||(28124-28330)
scaffold0061 (17-68)||(27958-28009)
[»] chr3 (3 HSPs)
chr3 (227-392)||(8343605-8343770)
chr3 (183-392)||(26729198-26729407)
chr3 (17-116)||(26729480-26729579)
[»] chr5 (2 HSPs)
chr5 (186-392)||(29506513-29506719)
chr5 (23-96)||(29506341-29506414)
[»] chr2 (4 HSPs)
chr2 (191-378)||(29227859-29228046)
chr2 (191-378)||(29341158-29341345)
chr2 (17-68)||(29227682-29227733)
chr2 (17-68)||(29340981-29341032)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 6e-81; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 188 - 392
Target Start/End: Complemental strand, 44613855 - 44613651
Alignment:
Q  188 agacattgaagtaaaattcttcatacaagttgggattcttcctgatatgttgttcagtgacaaatccaagacttgaagttttgtcaagtaacagagattt 287  Q
    ||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44613855 agacattgatgtaaaattgtttatacaagttgggattcttcctgatatgttgttcagtgacaaatccaagacttgaagttttgtcaagtaacagagattt 44613756  T
Q  288 gaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccatgaaacttat 387  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| |||| |  ||||  || | |||||||||||||||||||||||||||||||||||    
T  44613755 gaaggtaaacttccatagaagttattggatcgaaggcttaagatttctaaattttgtaagctatctccaatccatgaaggtaatggaccatgaaacttat 44613656  T
Q  388 tttct 392  Q
    |||||    
T  44613655 tttct 44613651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 188 - 392
Target Start/End: Original strand, 44794483 - 44794687
Alignment:
Q  188 agacattgaagtaaaattcttcatacaagttgggattcttcctgatatgttgttcagtgacaaatccaagacttgaagttttgtcaagtaacagagattt 287  Q
    ||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44794483 agacattgatgtaaaattgtttatacaagttgggattcttcctgatatgttgttcagtgacaaatccaagacttgaagttttgtcaagtaacagagattt 44794582  T
Q  288 gaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccatgaaacttat 387  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| |||| |  ||||  || | |||||||||||||||||||||||||||||||||||    
T  44794583 gaaggtaaacttccatagaagttattggatcgaaggcttaagatttctaaattttgtaagctatctccaatccatgaaggtaatggaccatgaaacttat 44794682  T
Q  388 tttct 392  Q
    |||||    
T  44794683 tttct 44794687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 161 - 392
Target Start/End: Complemental strand, 35900256 - 35900025
Alignment:
Q  161 tgatgtagttgaactagtaatctcatgagacattgaagtaaaattcttcatacaagttgggattcttcctgatatgttgttcagtgacaaatccaagact 260  Q
    ||||| ||||||| || | | ||| |||| |||| |||||| |||||| | |||||||||||||| |||||||| | | || ||||||||||| |||||     
T  35900256 tgatgaagttgaattaatgaactcctgagccattaaagtaagattctttacacaagttgggattcctcctgataagctattaagtgacaaatctaagaca 35900157  T
Q  261 tgaagttttgtcaagtaacagagatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatcc 360  Q
    ||||| ||| |||| ||||||||||||||||||| |||||||| ||| ||||| || |||||||||||||||| ||||||||| | ||| | ||||||||    
T  35900156 tgaagatttctcaaataacagagatttgaaggtagacttccattgaatttattgaaccgaaggcttaagattattaattggtgcaaactatctccaatcc 35900057  T
Q  361 atgaaggtaatggaccatgaaacttattttct 392  Q
    || |||||||||||||||||||  ||||||||    
T  35900056 ataaaggtaatggaccatgaaatatattttct 35900025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 186 - 392
Target Start/End: Original strand, 17810647 - 17810853
Alignment:
Q  186 tgagacattgaagtaaaattcttcatacaagttgggattcttcctgatatgttgttcagtgacaaatccaagacttgaagttttgtcaagtaacagagat 285  Q
    |||| ||||| |||||||||| | | |||||||||||||| |||||||| ||| || ||||||| |||||| ||| |||||||| |||| ||||| | ||    
T  17810647 tgagtcattgcagtaaaattcattacacaagttgggattcctcctgataagttatttagtgacagatccaatactcgaagttttctcaaataacatacat 17810746  T
Q  286 ttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccatgaaactt 385  Q
    ||||||||| |||||||   || ||||| |||||||| |||||||||||||||||||||| | | | ||||| |||||||||||||||||||||||||||    
T  17810747 ttgaaggtatacttccacttaaattattgaatcgaagacttaagattactaattggtgtaaattgtctccaacccatgaaggtaatggaccatgaaactt 17810846  T
Q  386 attttct 392  Q
    |||||||    
T  17810847 attttct 17810853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 191 - 392
Target Start/End: Complemental strand, 44146119 - 44145915
Alignment:
Q  191 cattgaagtaaaattcttcatacaagttgggattcttcctgatatgttgttcagtgacaaatccaagacttgaagt-tttgtcaagtaacagagatttga 289  Q
    ||||||||||||||| || | |||||||||||||| |||||||| | | || ||||||| |||||||||||| ||  ||| |||| || |||||||||||    
T  44146119 cattgaagtaaaattatttacacaagttgggattcctcctgataagctatttagtgacagatccaagacttggaggatttttcaaata-cagagatttga 44146021  T
Q  290 aggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccat---gaaggtaatggaccatgaaactta 386  Q
    ||||| |||||||| ||||||||| ||| | ||||||||||||||||||||||||| ||| | ||||||||||   ||||||||  ||||||||||| ||    
T  44146020 aggtagacttccattgaagttattgaattggaggcttaagattactaattggtgtaaactatctccaatccatgaagaaggtaacagaccatgaaacata 44145921  T
Q  387 ttttct 392  Q
    ||||||    
T  44145920 ttttct 44145915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 44794376 - 44794473
Alignment:
Q  17 aagattgttgcttgagagatcaatggtttttaaaaacttatctgcatttttgcagtctttttccacacctttccacatcagtaataggttgaaatgat 114  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||| ||||||| |||||||||||    
T  44794376 aagatggttgcttgagagatcaatggtttttaaaaacttatctgcatttttgaagtcttggtccacacctttccacataagtaataagttgaaatgat 44794473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 44613962 - 44613877
Alignment:
Q  17 aagattgttgcttgagagatcaatggtttttaaaaacttatctgcatttttgcagtctttttccacacctttccacatcagtaata 102  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||| |||||||    
T  44613962 aagatggttgcttgagagatcaatggtttttaaaaacttatctgcatttttgaagtcttggtccacacctttccacataagtaata 44613877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 243 - 392
Target Start/End: Original strand, 11543479 - 11543628
Alignment:
Q  243 agtgacaaatccaagacttgaagttttgtcaagtaacagagatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggt 342  Q
    ||||||| ||| ||||  || |||||| | || ||||||||||||||||||| |||||||  |||||||||   || ||||||||||||||||| ||| |    
T  11543479 agtgacatatctaagatatgcagttttcttaaataacagagatttgaaggtatacttccactgaagttattggctcaaaggcttaagattactagttgtt 11543578  T
Q  343 gtagactctgtccaatccatgaaggtaatggaccatgaaacttattttct 392  Q
    ||| |||   |||||||||||||||||| |||||||||||| ||||||||    
T  11543579 gtaaactgcctccaatccatgaaggtaacggaccatgaaacgtattttct 11543628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 44146293 - 44146250
Alignment:
Q  17 aagattgttgcttgagagatcaatggtttttaaaaacttatctg 60  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||    
T  44146293 aagatggttgcttgagagatcaatggtttttaaaagcttatctg 44146250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 17 - 392
Target Start/End: Complemental strand, 181921 - 181549
Alignment:
Q  17 aagattgttgcttgagagatcaatggtttttaaaaacttatctgcatttttgcagtctttttccacacctttccacatcagtaataggttgaaatgatat 116  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |   | | ||  |||||||||||||||| |||| |||| | | ||||    
T  181921 aagattgttgcttgagagatcaatcgtttttaaaaacttatctgcatttttgtaccgtctgtctgcacctttccacatcagaaataagttgtattcatat 181822  T
Q  117 attacaacatgattcgatgtattggttgaatacaagtgttccattgatgtagttgaactagtaatctcatgagacattgaagtaaaattcttcatacaag 216  Q
     |||||  || | |  |  |||||  ||||||| |||| ||||||||||||| |||  |  | |  |  |||| |||||||||||||||||| | |||||    
T  181821 tttacat-ataaat--aattattgagtgaataccagtgctccattgatgtagctgagttcatgaagttctgagtcattgaagtaaaattctttacacaag 181725  T
Q  217 ttgggattcttcctgatatgttgttcagtgacaaatccaagacttgaagttttgtcaagtaacagagatttgaaggtaaacttccatagaagttattaaa 316  Q
    ||||||||| |||||||| | | || |  |||| ||||||||| |||||||||||||| ||||||||||||||||| | | |||||| |||||| || ||    
T  181724 ttgggattcctcctgataagctatttacggacagatccaagacatgaagttttgtcaaataacagagatttgaaggaagaattccattgaagttgttgaa 181625  T
Q  317 tcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccatgaaacttattttct 392  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||    
T  181624 tcgaaggcttaagattactaattggtgtaaactttgtccaatccatgcaggtaatggaccatgaaacttattttct 181549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 186 - 392
Target Start/End: Complemental strand, 170668 - 170462
Alignment:
Q  186 tgagacattgaagtaaaattcttcatacaagttgggattcttcctgatatgttgttcagtgacaaatccaagacttgaagttttgtcaagtaacagagat 285  Q
    |||| ||||||||| ||||| || | |||||| ||||||| ||||||||  || || ||||||| ||| ||||| |||||||||||||| ||||| ||||    
T  170668 tgagccattgaagttaaattgtttacacaagtggggattcctcctgataaattatttagtgacatatctaagacatgaagttttgtcaaataacatagat 170569  T
Q  286 ttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccatgaaactt 385  Q
    ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||  |||   | | |||||||||||||||||||||||| |||||| |    
T  170568 ttgaaggtagacttccattgaagttattgaatcgaaggcttaagattactaattgtcgtaagttgtctccaatccatgaaggtaatggaccttgaaacat 170469  T
Q  386 attttct 392  Q
    |||||||    
T  170468 attttct 170462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 170834 - 170783
Alignment:
Q  17 aagattgttgcttgagagatcaatggtttttaaaaacttatctgcatttttg 68  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  170834 aagatggttgcttgagagatcaatggtttttaaaaacttatctgcatttttg 170783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 186 - 392
Target Start/End: Original strand, 28124 - 28330
Alignment:
Q  186 tgagacattgaagtaaaattcttcatacaagttgggattcttcctgatatgttgttcagtgacaaatccaagacttgaagttttgtcaagtaacagagat 285  Q
    |||| ||||||||| ||||| || | |||||| ||||||| ||||||||  || || ||||||| ||| ||||| |||||||||||||| ||||| ||||    
T  28124 tgagccattgaagttaaattgtttacacaagtggggattcctcctgataaattatttagtgacatatctaagacatgaagttttgtcaaataacatagat 28223  T
Q  286 ttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccatgaaactt 385  Q
    ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||  |||   | | |||||||||||||||||||||||| |||||| |    
T  28224 ttgaaggtagacttccattgaagttattgaatcgaaggcttaagattactaattgtcgtaagttgtctccaatccatgaaggtaatggaccttgaaacat 28323  T
Q  386 attttct 392  Q
    |||||||    
T  28324 attttct 28330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 27958 - 28009
Alignment:
Q  17 aagattgttgcttgagagatcaatggtttttaaaaacttatctgcatttttg 68  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27958 aagatggttgcttgagagatcaatggtttttaaaaacttatctgcatttttg 28009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 227 - 392
Target Start/End: Complemental strand, 8343770 - 8343605
Alignment:
Q  227 tcctgatatgttgttcagtgacaaatccaagacttgaagttttgtcaagtaacagagatttgaaggtaaacttccatagaagttattaaatcgaaggctt 326  Q
    |||||||| ||| || || |||| ||||||||| ||||||||| |||| ||||| ||||||||||||| |||||||| ||||||||| | ||||| ||||    
T  8343770 tcctgataagttatttagcgacagatccaagacatgaagttttctcaaataacaaagatttgaaggtatacttccattgaagttattgactcgaatgctt 8343671  T
Q  327 aagattactaattggtgtagactctgtccaatccatgaaggtaatggaccatgaaacttattttct 392  Q
    |||||||||||||| ||||   | | ||||||||||||||||||||||||||||||||||||||||    
T  8343670 aagattactaattgatgtaagttgtctccaatccatgaaggtaatggaccatgaaacttattttct 8343605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 183 - 392
Target Start/End: Complemental strand, 26729407 - 26729198
Alignment:
Q  183 tcatgagacattgaagtaaaattcttcatacaagttgggattcttcctgatatgttgttcagtgacaaatccaagacttgaagttttgtcaagtaacaga 282  Q
    ||||||| ||| |||||||||||  ||| ||| |||||||||| |||||||| ||| || || || | ||||||||||  ||| ||| |||| ||||| |    
T  26729407 tcatgagtcatggaagtaaaattactcacacatgttgggattcctcctgataagttatttagggaaagatccaagactctaaggtttctcaaataacaaa 26729308  T
Q  283 gatttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccatgaaa 382  Q
     ||||||||||| |||||||||||||||||| || ||||||||||| |||| ||||||  ||| ||||| ||||||||||| ||||||||||||||||||    
T  26729307 tatttgaaggtatacttccatagaagttattgaaccgaaggcttaatattattaattgccgtaaactctctccaatccatgcaggtaatggaccatgaaa 26729208  T
Q  383 cttattttct 392  Q
    | ||||||||    
T  26729207 catattttct 26729198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 26729579 - 26729480
Alignment:
Q  17 aagattgttgcttgagagatcaatggtttttaaaaacttatctgcatttttgcagtctttttccacacctttccacatcagtaataggttgaaatgatat 116  Q
    ||||| ||||||||||||||||||| ||||||||||| |||||||||||||| ||  ||  ||  |||||||||||||||  | ||||||||||| ||||    
T  26729579 aagatagttgcttgagagatcaatgctttttaaaaacatatctgcatttttgtagggttggtcttcacctttccacatcaagattaggttgaaataatat 26729480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 186 - 392
Target Start/End: Original strand, 29506513 - 29506719
Alignment:
Q  186 tgagacattgaagtaaaattcttcatacaagttgggattcttcctgatatgttgttcagtgacaaatccaagacttgaagttttgtcaagtaacagagat 285  Q
    |||| |||||||||||||||||| | ||| |||||||||| |||||||| | | || ||||||||||||||||||||||||| | |||| ||||| || |    
T  29506513 tgagccattgaagtaaaattctttacacatgttgggattcctcctgataagctatttagtgacaaatccaagacttgaagttctctcaaataacataggt 29506612  T
Q  286 ttgaaggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccatgaaactt 385  Q
    ||||||| |  ||| | | ||| | ||| | ||||||||||||||||| ||| ||||||| ||| | ||||||||||||||||| ||||||||||||| |    
T  29506613 ttgaaggcaggctttcgttgaaatcattgagtcgaaggcttaagattattaactggtgtaaactgtctccaatccatgaaggtattggaccatgaaacat 29506712  T
Q  386 attttct 392  Q
    |||||||    
T  29506713 attttct 29506719  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 29506341 - 29506414
Alignment:
Q  23 gttgcttgagagatcaatggtttttaaaaacttatctgcatttttgcagtctttttccacacctttccacatca 96  Q
    ||||||||||||||||||| | |||||||||||||||||||||||  ||  |   |||||||||||||||||||    
T  29506341 gttgcttgagagatcaatgctgtttaaaaacttatctgcatttttaaagagtcggtccacacctttccacatca 29506414  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 191 - 378
Target Start/End: Original strand, 29227859 - 29228046
Alignment:
Q  191 cattgaagtaaaattcttcatacaagttgggattcttcctgatatgttgttcagtgacaaatccaagacttgaagttttgtcaagtaacagagatttgaa 290  Q
    |||||||||||||||||| | ||| | ||| |||| |||||| | | | || ||||||| ||| || |||||||||| | |||| |||||||||||||||    
T  29227859 cattgaagtaaaattcttaacacatgatggaattcctcctgagaagctatttagtgacagatctaatacttgaagttctctcaaataacagagatttgaa 29227958  T
Q  291 ggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccat 378  Q
    | || |||||||| |||| | ||| |||||||||||||||||| | ||   |||||||| | |||||||||| |||| |||| |||||    
T  29227959 gctagacttccattgaagctgttagatcgaaggcttaagattagtgatccttgtagactgtctccaatccataaaggcaatgcaccat 29228046  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 191 - 378
Target Start/End: Original strand, 29341158 - 29341345
Alignment:
Q  191 cattgaagtaaaattcttcatacaagttgggattcttcctgatatgttgttcagtgacaaatccaagacttgaagttttgtcaagtaacagagatttgaa 290  Q
    |||||||||||||||||| | ||| | ||| |||| |||||| | | | || ||||||| ||| || |||||||||| | |||| |||||||||||||||    
T  29341158 cattgaagtaaaattcttaacacatgatggaattcctcctgagaagctatttagtgacagatctaatacttgaagttctctcaaataacagagatttgaa 29341257  T
Q  291 ggtaaacttccatagaagttattaaatcgaaggcttaagattactaattggtgtagactctgtccaatccatgaaggtaatggaccat 378  Q
    | || |||||||| |||| | ||| |||||||||||||||||| | ||   |||||||| | |||||||||| |||| |||| |||||    
T  29341258 gctagacttccattgaagctgttagatcgaaggcttaagattagtgatccttgtagactgtctccaatccataaaggcaatgcaccat 29341345  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 29227682 - 29227733
Alignment:
Q  17 aagattgttgcttgagagatcaatggtttttaaaaacttatctgcatttttg 68  Q
    ||||| ||||||||||||||||||||||||||||||| |||| |||||||||    
T  29227682 aagatggttgcttgagagatcaatggtttttaaaaacctatcagcatttttg 29227733  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 29340981 - 29341032
Alignment:
Q  17 aagattgttgcttgagagatcaatggtttttaaaaacttatctgcatttttg 68  Q
    ||||| ||||||||||||||||||||||||||||||| |||| |||||||||    
T  29340981 aagatggttgcttgagagatcaatggtttttaaaaacctatcagcatttttg 29341032  T

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