View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19540_low_6 (Length: 358)
Name: NF19540_low_6
Description: NF19540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19540_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 34313251 - 34312912
Alignment:
| Q |
16 |
tcaatgtaatttaggagagaagattctctcttgtaattggagagtccaattaaatctaagtcatttattttccattactccatgtaggaccctcaacatt |
115 |
Q |
| |
|
||||||||| |||| ||| ||||||||| | |||||| |||||||||| |||||||||||||||||||||||| |||||||| ||| || ||||| || |
|
|
| T |
34313251 |
tcaatgtaacttagtggagcagattctcttctataattgaagagtccaataaaatctaagtcatttattttccatcactccatgcagggcc-tcaacgtt |
34313153 |
T |
|
| Q |
116 |
gaagtaattgaatggtattaatgttcatatcactttcttcattaaaagtttcactagaagatatgcactcgtaacttagatactttgagcgtaaagatta |
215 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34313152 |
gaactaattgaatggtactaatgttcatatcactttctccattaaaagtttcactagaagatatgcactcgtaacttagatactttgagcttaaagatta |
34313053 |
T |
|
| Q |
216 |
caatattataatttgtgacagttatttttcctattcaaaacttctatatatacataattaataagtaaccataaataacaaccataaattaaaagtcttc |
315 |
Q |
| |
|
|| |||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34313052 |
cagtattctaatttgtgacccttatttttcctattcaaaacttctatatatagataattaataagtaaccgtaaataacaaccataaattaaaagtcttc |
34312953 |
T |
|
| Q |
316 |
gacacatgtcttaatatgctcttacgtgtcttcaacctttg |
356 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34312952 |
gacatatgtcttaatatgctctcacgtgtcttcaacctttg |
34312912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 34605507 - 34605426
Alignment:
| Q |
58 |
agtccaattaaatctaagtcatttattttccattactccatgtaggaccctcaacattgaagtaattgaatggtattaatgt |
139 |
Q |
| |
|
|||||||| | |||||||||| ||||||| || |||||||| || | | |||| |||||||||||||||| ||||| |||| |
|
|
| T |
34605507 |
agtccaatgagatctaagtcacttatttttcactactccatacagaatcttcaatattgaagtaattgaatagtattgatgt |
34605426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 31228543 - 31228438
Alignment:
| Q |
34 |
gaagattctctcttgtaattggagagtccaattaaatctaagtcatttattttccattactccatgtaggaccctcaacattgaagtaattgaatggtat |
133 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | | ||||||| ||||||||||| | |||||||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
31228543 |
gaagattctctcttgtgattggagagtccagtgagatctaagccatttattttctactactccatgtggagccctcaacgttgaagtaattgaatggtat |
31228444 |
T |
|
| Q |
134 |
taatgt |
139 |
Q |
| |
|
| |||| |
|
|
| T |
31228443 |
tgatgt |
31228438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 23861998 - 23862093
Alignment:
| Q |
37 |
gattctctcttgtaattggagagtccaattaaatctaagtcatttattttccattactccatgtaggaccctcaacattgaagtaattgaatggtat |
133 |
Q |
| |
|
||||||||| ||| || |||||||||||| | ||||||| ||||||||||| | |||||||||| || || |||| ||||||||||||||||||||| |
|
|
| T |
23861998 |
gattctctcctgtgatcggagagtccaatgagatctaagccatttattttctactactccatgt-gggccttcaatattgaagtaattgaatggtat |
23862093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 8533778 - 8533884
Alignment:
| Q |
36 |
agattctctcttgtaattggagagtccaattaaatctaagtcatttattttccattactccatgtaggaccctcaacattgaagtaattgaatggtatta |
135 |
Q |
| |
|
|||||||||| ||||| | |||||| |||| | ||||||| ||||||||||||| |||||| || | || |||||||||||||||||||||||||||| |
|
|
| T |
8533778 |
agattctctcatgtaacttgagagttcaatgagatctaagccatttattttccactactccgtgcggagccttcaacattgaagtaattgaatggtatta |
8533877 |
T |
|
| Q |
136 |
atgttca |
142 |
Q |
| |
|
||||||| |
|
|
| T |
8533878 |
atgttca |
8533884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 34639606 - 34639669
Alignment:
| Q |
71 |
ctaagtcatttattttccattactccatgtaggaccctcaacattgaagtaattgaatggtatt |
134 |
Q |
| |
|
||||| |||||||||| || ||||||||||||| ||| ||||||||| |||||||||||||||| |
|
|
| T |
34639606 |
ctaagccatttatttttcactactccatgtagggcccacaacattgatgtaattgaatggtatt |
34639669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 16443120 - 16443009
Alignment:
| Q |
28 |
aggagagaagattctctcttgtaattggagagtccaattaaatctaagtcatttattttccattactccatgtaggaccctcaacattgaagtaattgaa |
127 |
Q |
| |
|
||||||| | |||||||| ||| | |||||||||| | | |||||| ||||||||||||| |||| ||||| || |||||||||||||| ||||||| |
|
|
| T |
16443120 |
aggagagcaaattctctcatgtgactggagagtccggtgatatctaaaccatttattttccactacttcatgtgagatcctcaacattgaagcaattgaa |
16443021 |
T |
|
| Q |
128 |
tggtattaatgt |
139 |
Q |
| |
|
|| |||| |||| |
|
|
| T |
16443020 |
tgatattgatgt |
16443009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 7256842 - 7256763
Alignment:
| Q |
54 |
ggagagtccaattaaatctaagtcatttattttccattactccatgtaggaccctcaacattgaagtaattgaatggtat |
133 |
Q |
| |
|
|||||||||| | | ||||||| ||||||||||||| |||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
7256842 |
ggagagtccagtgagatctaagccatttattttccactacttcatgggatgccctcaacattgaagtaattgaatggtat |
7256763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 17177462 - 17177506
Alignment:
| Q |
38 |
attctctcttgtaattggagagtccaattaaatctaagtcattta |
82 |
Q |
| |
|
|||||||| ||| | ||||||||||||| |||||||||||||||| |
|
|
| T |
17177462 |
attctctcctgtgactggagagtccaatgaaatctaagtcattta |
17177506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University