View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19540_low_7 (Length: 314)
Name: NF19540_low_7
Description: NF19540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19540_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 36369718 - 36369476
Alignment:
| Q |
19 |
aggaatgaggtaggatttcaatcaatttacacattttgaaggttaaatttccatttagctctcaaaaaatcttcgattataaattttgaaactaatagga |
118 |
Q |
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| T |
36369718 |
aggaatgaggtaggattttaatcaatttacacattttgaaggttaaatttccatttagctctcaaaaaatcttcgattataaattttgaaactaatagga |
36369619 |
T |
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| Q |
119 |
cacattttgcataacagactgcnnnnnnntaatgaaatataaagaacaagggatgtcatccctaaatatcacataccctttcttttttcctcccacatgc |
218 |
Q |
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| T |
36369618 |
cacattttgcataacagactgcaaaaaaataatgaattataaggaacaagggatgtcatccctaaatatcacataccctttcttttttcctcccacatgc |
36369519 |
T |
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| Q |
219 |
aatacatacatgaaaggaggaggacaattgcaactatagaaact |
262 |
Q |
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| T |
36369518 |
aatacatacatgaaaggaggaggacaattg-aactatagaaact |
36369476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 186 - 307
Target Start/End: Complemental strand, 36417649 - 36417528
Alignment:
| Q |
186 |
atcacataccctttcttttttcctcccacatgcaatacatacatgaaaggaggaggacaattgcaactatagaaactaccagaaccgcagctaacctctt |
285 |
Q |
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|||||||||||||||| |||| || ||||||| ||| || ||| | ||||||| ||||||||||||||||||| |||| |||| |||||||||||||| |
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| T |
36417649 |
atcacataccctttctctttttcttccacatgtaattcacacagaagaggaggatgacaattgcaactatagaagctacaagaattgcagctaacctctt |
36417550 |
T |
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| Q |
286 |
tttaccaaggattcctttgctt |
307 |
Q |
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|||| |||||| |||||||||| |
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| T |
36417549 |
tttatcaaggactcctttgctt |
36417528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 307
Target Start/End: Complemental strand, 36426474 - 36426356
Alignment:
| Q |
189 |
acataccctttcttttttcctcccacatgcaatacatacatgaaaggaggaggacaattgcaactatagaaactaccagaaccgcagctaacctcttttt |
288 |
Q |
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||||||||||||| |||| || ||||||| ||| || ||| | ||||||| ||||||||||||||||||| |||| |||| ||||||||||||||||| |
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| T |
36426474 |
acataccctttctctttttcttccacatgtaattcacacagaagaggaggatgacaattgcaactatagaagctacaagaattgcagctaacctcttttt |
36426375 |
T |
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| Q |
289 |
accaaggattcctttgctt |
307 |
Q |
| |
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||||||| |||||||||| |
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| T |
36426374 |
gccaaggactcctttgctt |
36426356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 307
Target Start/End: Complemental strand, 36398061 - 36397940
Alignment:
| Q |
186 |
atcacataccctttcttttttcctcccacatgcaatacatacatgaaaggaggaggacaattgcaactatagaaactaccagaaccgcagctaacctctt |
285 |
Q |
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||||||||||||||||||||| || ||||||| ||| || ||| || ||||| | ||| ||||||||||| |||||||||| || |||| |||||||| |
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| T |
36398061 |
atcacataccctttctttttttcttccacatgtaattcacacaagagaggagaatgacgattgcaactattgaaactaccataattacagccaacctctt |
36397962 |
T |
|
| Q |
286 |
tttaccaaggattcctttgctt |
307 |
Q |
| |
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|||| |||||| |||||||||| |
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| T |
36397961 |
tttatcaaggactcctttgctt |
36397940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 307
Target Start/End: Complemental strand, 36412310 - 36412197
Alignment:
| Q |
194 |
ccctttcttttttcctcccacatgcaatacatacatgaaaggaggaggacaattgcaactatagaaactaccagaaccgcagctaacctctttttaccaa |
293 |
Q |
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|||||||| |||| || ||||||| ||| || ||| | ||||||| ||||||||||||||||||| |||| |||| |||||||||||||||||| ||| |
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| T |
36412310 |
ccctttctctttttcttccacatgtaattcacacagaagaggaggatgacaattgcaactatagaagctacaagaattgcagctaacctctttttatcaa |
36412211 |
T |
|
| Q |
294 |
ggattcctttgctt |
307 |
Q |
| |
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||| |||||||||| |
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| T |
36412210 |
ggactcctttgctt |
36412197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 186 - 303
Target Start/End: Complemental strand, 36388282 - 36388165
Alignment:
| Q |
186 |
atcacataccctttcttttttcctcccacatgcaatacatacatgaaaggaggaggacaattgcaactatagaaactaccagaaccgcagctaacctctt |
285 |
Q |
| |
|
|||||||||||| ||||||| || ||||||| | | || ||| || ||||||||||||||||||| ||||||| |||| |||| ||||| |||||||| |
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| T |
36388282 |
atcacataccctccctttttttcttccacatgtagttcacacaggagaggaggaggacaattgcaattatagaagctacaagaattgcagccaacctctt |
36388183 |
T |
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| Q |
286 |
tttaccaaggattccttt |
303 |
Q |
| |
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|||| |||| | |||||| |
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| T |
36388182 |
tttatcaagaactccttt |
36388165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 288
Target Start/End: Complemental strand, 36404992 - 36404894
Alignment:
| Q |
190 |
cataccctttcttttttcctcccacatgcaatacatacatgaaaggaggaggacaattgcaactatagaaactaccagaaccgcagctaacctcttttt |
288 |
Q |
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|||||||||| |||||| || ||||||| ||| | ||| || ||||||| |||||||||||| |||||| ||||||||| ||||| ||||||||||| |
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| T |
36404992 |
cataccctttgtttttttcttccacatgtaatttacacaggagaggaggatgacaattgcaacaatagaagctaccagaattgcagccaacctcttttt |
36404894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 309
Target Start/End: Complemental strand, 36374368 - 36374203
Alignment:
| Q |
148 |
taatgaaatataaagaacaagggatgtcatccctaaat----atcacataccctttcttttttcctcccacatgcaatacatacatgaaaggaggaggac |
243 |
Q |
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||||||||||||||||||| |||| | |||| |||| |||||||||| |||||| ||| || |||| ||||| ||| | | || ||||||||||| |
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| T |
36374368 |
taatgaaatataaagaacagaggatattatccttaaaattgaatcacataccgtttcttgttttcttccacctgcaaaacacaaaggagaggaggaggac |
36374269 |
T |
|
| Q |
244 |
aattgcaactatagaaactaccagaaccgcagctaacctctttttaccaaggattcctttgcttct |
309 |
Q |
| |
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||| |||||| ||||| | ||||||| |||| | |||||||| ||| |||| |||||||||||| |
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| T |
36374268 |
aatcgcaactgtagaagcaaccagaattgcagaaatcctcttttgacctaggactcctttgcttct |
36374203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 36434584 - 36434499
Alignment:
| Q |
23 |
atgaggtaggatttcaatcaatttacacattttgaaggttaaatttccatttagctctcaaaa--aatcttcgattataaattttg |
106 |
Q |
| |
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|||||||| |||||||||||| ||| |||||||||||| | ||||| ||| |||||||||| |||||| ||||||| |||||| |
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| T |
36434584 |
atgaggtaagatttcaatcaacttaaacattttgaagggtgtatttctttttggctctcaaaaagaatcttagattatacattttg |
36434499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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