View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19541_high_1 (Length: 386)

Name: NF19541_high_1
Description: NF19541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19541_high_1
NF19541_high_1
[»] chr8 (14 HSPs)
chr8 (84-373)||(41722059-41722350)
chr8 (86-155)||(14999169-14999238)
chr8 (86-155)||(41403994-41404063)
chr8 (86-153)||(16324844-16324911)
chr8 (86-153)||(43801705-43801772)
chr8 (86-158)||(15009092-15009164)
chr8 (86-153)||(6911029-6911096)
chr8 (86-153)||(16325080-16325147)
chr8 (86-153)||(43801470-43801537)
chr8 (86-152)||(41403760-41403826)
chr8 (86-153)||(8489373-8489440)
chr8 (86-145)||(22781063-22781122)
chr8 (86-120)||(6911263-6911297)
chr8 (86-154)||(9133899-9133968)
[»] chr2 (13 HSPs)
chr2 (86-153)||(29893031-29893098)
chr2 (86-154)||(4371453-4371521)
chr2 (86-153)||(22563210-22563277)
chr2 (86-153)||(21265563-21265630)
chr2 (86-137)||(12232579-12232630)
chr2 (86-153)||(21265796-21265863)
chr2 (86-153)||(22563444-22563511)
chr2 (86-153)||(17200078-17200145)
chr2 (86-155)||(34645780-34645849)
chr2 (86-153)||(34645547-34645614)
chr2 (101-137)||(33491417-33491453)
chr2 (116-155)||(33491327-33491366)
chr2 (86-152)||(4682757-4682823)
[»] chr7 (9 HSPs)
chr7 (86-154)||(35207177-35207245)
chr7 (86-154)||(25048258-25048326)
chr7 (86-153)||(19318453-19318520)
chr7 (86-153)||(35207409-35207476)
chr7 (86-155)||(39983871-39983940)
chr7 (86-153)||(19318382-19318449)
chr7 (86-137)||(29474646-29474697)
chr7 (86-153)||(2834433-2834500)
chr7 (86-153)||(35363318-35363385)
[»] chr1 (12 HSPs)
chr1 (86-154)||(24883202-24883270)
chr1 (89-153)||(24882971-24883035)
chr1 (86-152)||(27171800-27171866)
chr1 (86-151)||(34969987-34970052)
chr1 (86-146)||(49777057-49777117)
chr1 (86-153)||(3385308-3385375)
chr1 (86-153)||(3385545-3385612)
chr1 (86-153)||(49776819-49776886)
chr1 (86-152)||(33401090-33401156)
chr1 (86-137)||(33156688-33156739)
chr1 (86-153)||(34622559-34622626)
chr1 (86-150)||(39781073-39781137)
[»] chr5 (10 HSPs)
chr5 (86-162)||(31193956-31194032)
chr5 (86-153)||(31194199-31194266)
chr5 (86-155)||(36955301-36955370)
chr5 (86-154)||(14076903-14076971)
chr5 (86-153)||(17370067-17370134)
chr5 (86-137)||(36955528-36955579)
chr5 (86-153)||(8754658-8754725)
chr5 (86-127)||(43449493-43449534)
chr5 (86-137)||(32347131-32347182)
chr5 (86-120)||(42546583-42546617)
[»] chr4 (16 HSPs)
chr4 (86-153)||(50544256-50544323)
chr4 (86-153)||(54316063-54316130)
chr4 (86-153)||(7061972-7062039)
chr4 (89-137)||(42475892-42475940)
chr4 (86-148)||(46993072-46993134)
chr4 (88-155)||(9551461-9551528)
chr4 (86-153)||(11789859-11789926)
chr4 (86-153)||(17914982-17915049)
chr4 (88-153)||(24673957-24674022)
chr4 (86-150)||(23655302-23655366)
chr4 (86-125)||(5466083-5466122)
chr4 (94-137)||(21785940-21785983)
chr4 (84-137)||(3556382-3556435)
chr4 (86-151)||(5465855-5465920)
chr4 (86-126)||(8538361-8538401)
chr4 (86-125)||(51959733-51959773)
[»] chr3 (13 HSPs)
chr3 (86-153)||(8799317-8799384)
chr3 (86-153)||(38499819-38499886)
chr3 (86-152)||(4041417-4041483)
chr3 (86-154)||(38500055-38500123)
chr3 (86-148)||(53197217-53197279)
chr3 (86-146)||(43797586-43797646)
chr3 (86-137)||(43797368-43797419)
chr3 (86-154)||(53196987-53197055)
chr3 (86-125)||(46883646-46883685)
chr3 (86-128)||(25349944-25349986)
chr3 (86-152)||(43797875-43797941)
chr3 (116-153)||(29828685-29828722)
chr3 (86-154)||(48346213-48346281)
[»] chr6 (3 HSPs)
chr6 (86-155)||(22748586-22748655)
chr6 (86-158)||(16125517-16125589)
chr6 (86-127)||(24197709-24197750)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 84 - 373
Target Start/End: Original strand, 41722059 - 41722350
Alignment:
Q  84 caacatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcctcaaccccaccctcaaaattgaaagggta 183  Q
    ||||||||||||||||||| | ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  41722059 caacatgtcttgcatccaagctctaaataaagtaaatagagcttagcctaaatgaaacatacccgaactcctcaaccccaccattaaaattgaaagggta 41722158  T
Q  184 gaatgcagataacaaagaaatagatagctctgttacannnnnnnn--aatgaatgggtattctttaatcacgactatgaagattaatatctcaaaccagc 281  Q
    |||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722159 gaatgcagataacaaagaaatagatagctctgttacattatttttttaatgaatgggtattctttaatcacgactatgaagattaatatctcaaaccagc 41722258  T
Q  282 taaggctacaatagatggcaaagttcttcttcacgagatttgtctagcatgaatttgattactataactaattaactatattaggtatgttt 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||    
T  41722259 taaggctacaatagatggcaaagttcttcttcacgagatttgtctagcatgagtttgattactataattaattaactatattagatatgttt 41722350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 14999238 - 14999169
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcct 155  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||| ||||||||||    
T  14999238 acatgtcttgcatccaaaccctaaatggagtaaattgagcttagcctaaatggagcatatccgaactcct 14999169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 41403994 - 41404063
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcct 155  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||| | ||||||| |||||||    
T  41403994 acatgtcttgcatccaaaccctaaatagagtaaattgaacttaacctaaatggagcatacccaaactcct 41404063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 16324911 - 16324844
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||| | ||| |||||||||    
T  16324911 acatgtcttgcatccaaaccctaaatggattaaattgagcttagcctaaatggagcatgcccgaactc 16324844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 43801705 - 43801772
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||| |||||||||||||| |||||| |||||||| |||||||||||||||| |||||||||||||||    
T  43801705 acatatcttgcatccaaactctaaatggagtaaatggagcttagcctaaatggaacatacccgaactc 43801772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 15009092 - 15009164
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcctcaa 158  Q
    ||||||||| |||||||||||||||| ||||||||  ||||||||||||||| | ||||||||||||| ||||    
T  15009092 acatgtcttacatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccgaactcatcaa 15009164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 6911096 - 6911029
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    ||||||||| |||||||||||||||| |||||||| |||||||||||||||| | |||||| ||||||    
T  6911096 acatgtcttacatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacctgaactc 6911029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 16325080 - 16325147
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||||||||||||||||||||||||| |||||||| ||| || || |||||||| ||||| |||||||    
T  16325080 acatgtcttgcatccaaaccctaaatggagtaaatggagtttggcttaaatgaagcatactcgaactc 16325147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 43801537 - 43801470
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    ||||||||| ||||||||| |||||| ||||||||  || |||||||||||||| |||||||||||||    
T  43801537 acatgtcttacatccaaactctaaatggagtaaatgaagtttagcctaaatgaagcatacccgaactc 43801470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 41403826 - 41403760
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaact 152  Q
    |||| |||| |||| ||| ||||||| ||||||||||||||||  ||||||||| ||||||||||||    
T  41403826 acatatcttacatcaaaatcctaaatggagtaaattgagcttaatctaaatgaagcatacccgaact 41403760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 8489440 - 8489373
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    ||||||||| |||||||||||||||| || |||||  |||||| |||||||| | ||||||| |||||    
T  8489440 acatgtcttacatccaaaccctaaatggaataaatgaagcttaacctaaatggagcatacccaaactc 8489373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 22781122 - 22781063
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatac 145  Q
    ||||| |||||||||||||||| ||| ||||||||  || ||||||||||| ||||||||    
T  22781122 acatgccttgcatccaaaccctgaatggagtaaatgaagtttagcctaaataaaacatac 22781063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 6911263 - 6911297
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaat 120  Q
    |||||||||||||||||||||||||| ||||||||    
T  6911263 acatgtcttgcatccaaaccctaaatggagtaaat 6911297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 9133968 - 9133899
Alignment:
Q  86 acatgtcttgcatccaaa-ccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcc 154  Q
    ||||||| |||||||||| |||||||| |||||||||||||||  |||||||  | ||||||| ||||||    
T  9133968 acatgtcatgcatccaaatccctaaatggagtaaattgagctttacctaaatagagcatacccaaactcc 9133899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 29893031 - 29893098
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||    
T  29893031 acatgtcttgcatccaaaccctaaatagagtaaatagagcttagcctaaatggagcatacccgaactc 29893098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 4371521 - 4371453
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcc 154  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||| | ||||||||||||||    
T  4371521 acatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactcc 4371453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 22563277 - 22563210
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||| | |||||||||||||    
T  22563277 acatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 22563210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 21265630 - 21265563
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||| | ||||||| |||||    
T  21265630 acatgtcttgcatccaaaccctaaatggagtaaattgagcttagtctaaatggagcataccctaactc 21265563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 12232630 - 12232579
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatg 137  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  12232630 acatgtcttacatccaaaccctaaatagagtaaatggagcttagcctaaatg 12232579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 21265796 - 21265863
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||  | ||||| |||||||    
T  21265796 acatgtcttgcatccaaaccctaaatagagtaaatggagcttagcttaaatagagcatactcgaactc 21265863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 22563444 - 22563511
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||||||||||||||||| ||||||| |||||||| ||| |||||||||||| | |||||||||||||    
T  22563444 acatgtcttgcatccaaatcctaaatggagtaaatggagtttagcctaaatggagcatacccgaactc 22563511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 17200145 - 17200078
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    ||||||||| |||||||| ||||||| |||||||| |||||| ||||||||| | |||||||||||||    
T  17200145 acatgtcttacatccaaatcctaaatggagtaaatggagctttgcctaaatggagcatacccgaactc 17200078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 34645780 - 34645849
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcct 155  Q
    ||||||||| |||||||||||||||| || ||||| ||| | |||||||||| || ||||||||||||||    
T  34645780 acatgtcttacatccaaaccctaaatggaataaatggagttaagcctaaatggaatatacccgaactcct 34645849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 34645614 - 34645547
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||||||||||||||| ||||||||| |||||||| || |||| |||||||  | |||||||||||||    
T  34645614 acatgtcttgcatccataccctaaatggagtaaatagaacttaacctaaatagagcatacccgaactc 34645547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 33491417 - 33491453
Alignment:
Q  101 aaaccctaaatagagtaaattgagcttagcctaaatg 137  Q
    |||||||||||||||||||| ||||||||||||||||    
T  33491417 aaaccctaaatagagtaaatggagcttagcctaaatg 33491453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 33491366 - 33491327
Alignment:
Q  116 taaattgagcttagcctaaatgaaacatacccgaactcct 155  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  33491366 taaatggagcttagcctaaatggaacatacccgaactcct 33491327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 4682823 - 4682757
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaact 152  Q
    |||||||||||||| |||| |||||| ||||||||  ||||||   |||||| ||||||||||||||    
T  4682823 acatgtcttgcatctaaactctaaatggagtaaatgaagcttaaattaaatggaacatacccgaact 4682757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 35207245 - 35207177
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcc 154  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||| || |||||||||||||    
T  35207245 acatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggaatatacccgaactcc 35207177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 25048258 - 25048326
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcc 154  Q
    |||||||||||||||||| |||||||  ||||||| |||||||||||||||| | ||||||||||||||    
T  25048258 acatgtcttgcatccaaatcctaaatgaagtaaatggagcttagcctaaatggagcatacccgaactcc 25048326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 19318453 - 19318520
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||||||||||||| ||||| ||||| |||||||| |||||||||||||||| | |||||||||||||    
T  19318453 acatgtcttgcatctaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 19318520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 35207409 - 35207476
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||||||||||||||||||||||||| |||||||| ||| |||||||||||| | |||| ||||||||    
T  35207409 acatgtcttgcatccaaaccctaaatggagtaaatggagtttagcctaaatggagcatatccgaactc 35207476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 39983871 - 39983940
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcct 155  Q
    |||||||||||||||||||||||||| |||||||| |||||| ||||||||| | |||||  ||||||||    
T  39983871 acatgtcttgcatccaaaccctaaatggagtaaatggagcttcgcctaaatggagcatacatgaactcct 39983940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 19318382 - 19318449
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||||||||||||| ||||| ||||| ||||||||  ||||||||||||||| | |||||||||||||    
T  19318382 acatgtcttgcatctaaaccttaaatggagtaaatgaagcttagcctaaatggagcatacccgaactc 19318449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 29474646 - 29474697
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatg 137  Q
    ||||||||||||||||| | ||||||||||||||| ||| ||||||||||||    
T  29474646 acatgtcttgcatccaagctctaaatagagtaaatggagtttagcctaaatg 29474697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 2834433 - 2834500
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||||| ||| ||||||||||||||| || ||||| || ||||||||||||| | ||||||| |||||    
T  2834433 acatgttttgtatccaaaccctaaatggaataaatggaacttagcctaaatggagcatacccaaactc 2834500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 35363385 - 35363318
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||||| ||||||| |||| |||||| ||||||||  | ||||||||||||| | |||||||||||||    
T  35363385 acatgtgttgcatctaaactctaaatggagtaaatgaaacttagcctaaatggagcatacccgaactc 35363318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 24883202 - 24883270
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcc 154  Q
    |||| ||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||    
T  24883202 acatatcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggaacatacccgaactcc 24883270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 24883035 - 24882971
Alignment:
Q  89 tgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    ||||||||||||||||||||||| |||||||| ||| |||||||||||| | |||||||||||||    
T  24883035 tgtcttgcatccaaaccctaaatggagtaaatggagattagcctaaatggagcatacccgaactc 24882971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 27171866 - 27171800
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaact 152  Q
    ||||||||| |||||||||| ||||| ||||||||  ||||||||||||||||| ||||||||||||    
T  27171866 acatgtcttacatccaaaccataaatggagtaaatgaagcttagcctaaatgaagcatacccgaact 27171800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 34970052 - 34969987
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaac 151  Q
    |||||||||||||||||| ||||||| |||||||| ||| ||| |||||||||| |||||||||||    
T  34970052 acatgtcttgcatccaaatcctaaattgagtaaatggagtttaacctaaatgaagcatacccgaac 34969987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 49777057 - 49777117
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacc 146  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||||||||||| | ||||||    
T  49777057 acatgtcttgcatccaaaccctaaatagaataaatggagtttagcctaaatggagcatacc 49777117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 3385375 - 3385308
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    ||||||||| |||||||||||||||| | |||||   ||||||||||||||||| |||||||||||||    
T  3385375 acatgtcttacatccaaaccctaaatggggtaaacgaagcttagcctaaatgaagcatacccgaactc 3385308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 3385545 - 3385612
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||| |||| |||||||||||||||| |||||||| |||||| ||||||||| | |||||||||||||    
T  3385545 acatatcttacatccaaaccctaaatggagtaaatggagcttggcctaaatggagcatacccgaactc 3385612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 49776886 - 49776819
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||||||||||||||||| ||||||| ||||||||  |||||||| |||||| | |||||||||||||    
T  49776886 acatgtcttgcatccaaatcctaaatggagtaaataaagcttagcttaaatggagcatacccgaactc 49776819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 33401090 - 33401156
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaact 152  Q
    ||||||||| |||| ||||| |||||| |||||||||||||||||||||||| | |||| |||||||    
T  33401090 acatgtcttacatctaaaccttaaataaagtaaattgagcttagcctaaatgtagcatatccgaact 33401156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 33156688 - 33156739
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatg 137  Q
    |||||||||| ||||||||||||||| ||||||||  |||||||||||||||    
T  33156688 acatgtcttgtatccaaaccctaaatggagtaaataaagcttagcctaaatg 33156739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 34622559 - 34622626
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    ||||||||||||| |||||| ||||| |||||| | |||||||| ||||||| | |||||||||||||    
T  34622559 acatgtcttgcattcaaaccttaaatggagtaactggagcttagtctaaatggagcatacccgaactc 34622626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 39781137 - 39781073
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaa 150  Q
    |||||||| |||||||||| ||||||  |||||||  | ||||  ||||||||||||||||||||    
T  39781137 acatgtctcgcatccaaactctaaatgaagtaaatgaaacttaatctaaatgaaacatacccgaa 39781073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 31194032 - 31193956
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcctcaacccc 162  Q
    |||||||||||||||||||| ||||| |||||||| |||||||||||||||| | |||||||||||||  |||||||    
T  31194032 acatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactcaccaacccc 31193956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 31194199 - 31194266
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||||||||||||||||||| ||||| |||||||| |||||||||||||||| | |||||||||||||    
T  31194199 acatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 31194266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 36955370 - 36955301
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcct 155  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||||||||| | | |||||||||||||    
T  36955370 acatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcctacccgaactcct 36955301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 14076903 - 14076971
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcc 154  Q
    |||||||||||||||||||||||||| |||||||| || ||||||||||||| | |||| |||||||||    
T  14076903 acatgtcttgcatccaaaccctaaatggagtaaatagaacttagcctaaatggagcatatccgaactcc 14076971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 17370134 - 17370067
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||||||||||||||||||||||||| |||||||| ||| ||||| |||||| | |||||||||||||    
T  17370134 acatgtcttgcatccaaaccctaaatggagtaaatggagtttagcataaatggagcatacccgaactc 17370067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 36955528 - 36955579
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatg 137  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  36955528 acatgtcttgcaaccaaaccctaaatagagtaaatagagcttagcctaaatg 36955579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 8754725 - 8754658
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    ||||||||| ||||||||||||||||||||||||| ||| |||| ||||||| |  ||||||||||||    
T  8754725 acatgtcttccatccaaaccctaaatagagtaaatggagtttagtctaaatggaggatacccgaactc 8754658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 43449534 - 43449493
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagctt 127  Q
    |||||||||||||||||| |||||||||| ||||||||||||    
T  43449534 acatgtcttgcatccaaagcctaaatagactaaattgagctt 43449493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 32347131 - 32347182
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatg 137  Q
    ||||||||| |||||||||| ||||| |||||| | ||||||||||||||||    
T  32347131 acatgtcttacatccaaaccttaaatggagtaattggagcttagcctaaatg 32347182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 42546583 - 42546617
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaat 120  Q
    |||||||||||||||||||||||||| ||||||||    
T  42546583 acatgtcttgcatccaaaccctaaatggagtaaat 42546617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 50544323 - 50544256
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||| | |||| ||||||||    
T  50544323 acatgtcttgcatccaaaccctaaatagaataaatggagcttagcctaaatggagcatatccgaactc 50544256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 54316063 - 54316130
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||| | |||||||| ||||    
T  54316063 acatgtcttgcatccaaaccctaaatggagtaaatagagcttagcctaaatggagcatacccggactc 54316130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 7062039 - 7061972
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||||||||||||||||||| ||||| |||||||| ||| |||||||||||| | |||||||||||||    
T  7062039 acatgtcttgcatccaaaccataaatggagtaaatagaggttagcctaaatggagcatacccgaactc 7061972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 42475940 - 42475892
Alignment:
Q  89 tgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatg 137  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||    
T  42475940 tgtcttgcatccaaaccctaaatagagtaaatgaagcttagcctaaatg 42475892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 46993134 - 46993072
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccg 148  Q
    |||| |||||||||||||||||||||||| ||||| ||||||| |||||||| | ||||||||    
T  46993134 acatatcttgcatccaaaccctaaatagaataaatggagcttaacctaaatggagcatacccg 46993072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 9551461 - 9551528
Alignment:
Q  88 atgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcct 155  Q
    ||||||| ||||||| |||||||| |||||||| ||| |||| ||||||| | |||||||||||||||    
T  9551461 atgtcttccatccaagccctaaatggagtaaatggagtttagtctaaatggagcatacccgaactcct 9551528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 11789926 - 11789859
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||| ||||||||| ||||||||||| ||||||||  ||||| ||||||||| | |||||||||||||    
T  11789926 acatatcttgcatctaaaccctaaatggagtaaatgaagctttgcctaaatggagcatacccgaactc 11789859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 17914982 - 17915049
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||||||||||||||||||  ||||| |||||||| || ||||||||||||| | |||| ||||||||    
T  17914982 acatgtcttgcatccaaactttaaatggagtaaatggaacttagcctaaatggagcatatccgaactc 17915049  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 24673957 - 24674022
Alignment:
Q  88 atgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    ||||||| ||||||||| |||||||||||||||  || |||||||||||| | |||| ||||||||    
T  24673957 atgtcttacatccaaactctaaatagagtaaatgaagtttagcctaaatggagcatatccgaactc 24674022  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 23655302 - 23655366
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaa 150  Q
    |||||||||||||| ||||||||||| || |||||  |||||| |||||||| | ||||||||||    
T  23655302 acatgtcttgcatctaaaccctaaatggaataaatgaagcttaacctaaatggagcatacccgaa 23655366  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 5466083 - 5466122
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagc 125  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  5466083 acatgtcttacatccaaaccctaaatagagtaaatagagc 5466122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 21785940 - 21785983
Alignment:
Q  94 tgcatccaaaccctaaatagagtaaattgagcttagcctaaatg 137  Q
    ||||||||||| |||||| |||||||| ||||||||||||||||    
T  21785940 tgcatccaaactctaaatggagtaaatggagcttagcctaaatg 21785983  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 3556435 - 3556382
Alignment:
Q  84 caacatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatg 137  Q
    |||||||||||||||||||||| ||||| ||||||||  || ||||| ||||||    
T  3556435 caacatgtcttgcatccaaaccttaaatggagtaaatgaagtttagcttaaatg 3556382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 5465920 - 5465855
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaac 151  Q
    ||||||||| |||| |||||||||||  |||||||  | ||||||||||||| | |||||||||||    
T  5465920 acatgtcttacatctaaaccctaaatgaagtaaatgaaacttagcctaaatggagcatacccgaac 5465855  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 8538361 - 8538401
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagct 126  Q
    |||||||||||||||||||||||||| || ||||| |||||    
T  8538361 acatgtcttgcatccaaaccctaaatggactaaatggagct 8538401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 51959733 - 51959773
Alignment:
Q  86 acatgtcttgcatccaaa-ccctaaatagagtaaattgagc 125  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  51959733 acatgtcttgcatccaaacccctaaatagactaaattgagc 51959773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 8799384 - 8799317
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||||||||||||||||||||||||| |||||||| |||| ||||||||||| | |||||||||||||    
T  8799384 acatgtcttgcatccaaaccctaaatggagtaaatggagcctagcctaaatggagcatacccgaactc 8799317  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 38499886 - 38499819
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    |||||||||| ||||||||||||||| |||||||| |||||||||||||||| | |||||||||||||    
T  38499886 acatgtcttgtatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 38499819  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 4041417 - 4041483
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaact 152  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||||||||| | ||||||||||||    
T  4041417 acatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccgaact 4041483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 38500055 - 38500123
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcc 154  Q
    ||||||||| |||||||||||||| | |||||||| |||||||||||||||| | ||||||||||||||    
T  38500055 acatgtcttacatccaaaccctaattggagtaaatggagcttagcctaaatggagcatacccgaactcc 38500123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 53197217 - 53197279
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccg 148  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||||||||| | ||||||||    
T  53197217 acatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccg 53197279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 43797586 - 43797646
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacc 146  Q
    ||||||||| ||||||||||||||||||||||||| || ||||||||||||| | ||||||    
T  43797586 acatgtctttcatccaaaccctaaatagagtaaatggatcttagcctaaatggagcatacc 43797646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 43797419 - 43797368
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatg 137  Q
    |||||||||||||||||||| ||||| |||||||| ||||||||||||||||    
T  43797419 acatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatg 43797368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 53197055 - 53196987
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcc 154  Q
    |||||| ||||||||||||||||||||||||||||  || ||||| ||||||   ||||||||||||||    
T  53197055 acatgttttgcatccaaaccctaaatagagtaaatgaagtttagcttaaatggggcatacccgaactcc 53196987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 46883646 - 46883685
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagc 125  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  46883646 acatgtcttgcatccaaaccctaaatggagtaaatggagc 46883685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 25349944 - 25349986
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagctta 128  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||    
T  25349944 acatgtcttacatccaaaccctaaatagaataaatggagctta 25349986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 43797875 - 43797941
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaact 152  Q
    ||||||||||||||||| |||||||| |||||||| |  ||||||  ||||||| |||||| |||||    
T  43797875 acatgtcttgcatccaagccctaaatggagtaaatagcacttagcaaaaatgaagcatacctgaact 43797941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 29828722 - 29828685
Alignment:
Q  116 taaattgagcttagcctaaatgaaacatacccgaactc 153  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  29828722 taaatggagcttagcctaaatgaagcatacccgaactc 29828685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 48346213 - 48346281
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcc 154  Q
    |||||| |||||||||||  ||||||| ||||||| || || | |||||||| | ||||||||||||||    
T  48346213 acatgttttgcatccaaattctaaataaagtaaatagaactcaacctaaatggagcatacccgaactcc 48346281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 22748655 - 22748586
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcct 155  Q
    |||||||||||||||||| | ||||| |||||||| |||| ||||||||||  | |||||||||||||||    
T  22748655 acatgtcttgcatccaaatcttaaatggagtaaatggagcatagcctaaattgagcatacccgaactcct 22748586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 158
Target Start/End: Complemental strand, 16125589 - 16125517
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagcttagcctaaatgaaacatacccgaactcctcaa 158  Q
    ||||||||||||||||||||||||||  | |||||  || |||||||||||| | ||||||||||||| ||||    
T  16125589 acatgtcttgcatccaaaccctaaatgaaataaatgaagtttagcctaaatggagcatacccgaactcgtcaa 16125517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 24197750 - 24197709
Alignment:
Q  86 acatgtcttgcatccaaaccctaaatagagtaaattgagctt 127  Q
    ||||||||||||||||||  ||||||||| ||||||||||||    
T  24197750 acatgtcttgcatccaaagtctaaatagactaaattgagctt 24197709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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