View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19541_low_2 (Length: 374)
Name: NF19541_low_2
Description: NF19541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19541_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 9423725 - 9424062
Alignment:
| Q |
18 |
actccagcaccaaaacaaaactatagcacaattgagtgaaaatggtttcaacctctatttttggacgaaaaaccagttatgcaagatgtgtgatagtgtt |
117 |
Q |
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| T |
9423725 |
actccagcaccaaaacaaaacta--gcacc-ttaagtgaaaatggtttcaacctctatttttggacgaaaaaccagttatgcaagatgtgtgatagtttt |
9423821 |
T |
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| Q |
118 |
tctttacttgtttctacttccacacaaaacttattcacaaccttgttcttcttcctgtggaaaaatttctaacataactcatccattccgactaaaacac |
217 |
Q |
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| T |
9423822 |
tctttacttgtttctacttccacacaaaacttattcacaaccttgttcttcttcctgtggaaaaatttccaacataaatcatccattccgactaaaacac |
9423921 |
T |
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| Q |
218 |
gacccagaccactgtggcaacaatttgtacgagttgaattgtctaaacaacgttacagtattgaagctgtttgatgctgaatattttgtgcaatcaatca |
317 |
Q |
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| T |
9423922 |
gacccagaccactgtggcaacaatttgtacgagttgaattgcgtaaacaacgttacagtattgaagctgtttgatgctgaatattttgtgcaatcaatca |
9424021 |
T |
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| Q |
318 |
attacaacaattacacaatacgagttgttgaccctaatatt |
358 |
Q |
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| T |
9424022 |
attacaataattacacaatacgagttgttgaccctaatatt |
9424062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 50 - 351
Target Start/End: Original strand, 9443987 - 9444288
Alignment:
| Q |
50 |
tgagtgaaaatggtttcaacctctatttttggacgaaaaaccagttatgcaagatgtgtgatagtgtttctttacttgtttctacttccacacaaaactt |
149 |
Q |
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| T |
9443987 |
tgagtgaaaatggtttcaacctctaactttggagtaaaagccagatatgcaagaggtgtgatagtatttctttacttgtttctacttccacacaaaactt |
9444086 |
T |
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| Q |
150 |
attcacaaccttgttcttcttcctgtggaaaaatttctaacataactcatccattccgactaaaacacgacccagaccactgtggcaacaatttgtacga |
249 |
Q |
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| T |
9444087 |
attcacaaccttgttcttcttcctgtggaaaaatttccaacataacttatccattccgactaaaacacgacccagaccactgtggcaacaatttgtacga |
9444186 |
T |
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| Q |
250 |
gttgaattgtctaaacaacgttacagtattgaagctgtttgatgctgaatattttgtgcaatcaatcaattacaacaattacacaatacgagttgttgac |
349 |
Q |
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| T |
9444187 |
gttgaattgtctaaacaacgttacagtattgaagctgtatgatgctgaatatttggtgcaatcaatcaattacaacaattacacaatacgagttgttgac |
9444286 |
T |
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| Q |
350 |
cc |
351 |
Q |
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|| |
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| T |
9444287 |
cc |
9444288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 211 - 358
Target Start/End: Complemental strand, 9418105 - 9417958
Alignment:
| Q |
211 |
aaaacacgacccagaccactgtggcaacaatttgtacgagttgaattgtctaaacaacgttacagtattgaagctgtttgatgctgaatattttgtgcaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9418105 |
aaaacacgacccagaccactgtggcaacaatttgtacgagttgaattgtctaaacaacgttacagtattgaagctgtatgatgctgaatattttgtgcaa |
9418006 |
T |
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| Q |
311 |
tcaatcaattacaacaattacacaatacgagttgttgaccctaatatt |
358 |
Q |
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| T |
9418005 |
tcaatcaattacaagaattacacaatacgagttgttgaccctaatatt |
9417958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 9418263 - 9418102
Alignment:
| Q |
18 |
actccagcaccaaaacaaaactatagcacaattgagtgaaaatggtttcaacctctatttttggacgaaaaaccagttatgcaagatgtgtgatagtgtt |
117 |
Q |
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||||||||||||||||||||||| |||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9418263 |
actccagcaccaaaacaaaacta--gcacc-ttaagtgaaaatggtttcaaccactatttttggacgaaaaaccagttatgcaagatgtgtgatagtatt |
9418167 |
T |
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| Q |
118 |
tctttacttgtttctacttccacacaaaacttattcacaaccttgttcttcttcctgtggaaaaa |
182 |
Q |
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| T |
9418166 |
tctttacttgtttctacttccacacaaaacttattcacaaccttgttcttcttcctgtggaaaaa |
9418102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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