View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19542_high_1 (Length: 570)
Name: NF19542_high_1
Description: NF19542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19542_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 27 - 559
Target Start/End: Original strand, 12106180 - 12106711
Alignment:
| Q |
27 |
tggtgttgccgtctaactttatctcttttatgtagagcgccgaagaaaacaaagaagtgagcagcatacccagaaattcaaaggaaaattgcataatcat |
126 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12106180 |
tggtgttgtcgtctaactttatctcttttatgtagagcgccgaagaaaacaaagaagtgagcagcatacccagaaattcaaaggaaaattgcataatcat |
12106279 |
T |
|
| Q |
127 |
gtagtgtgtgctataattatgttcaatgctaactagccnnnnnnnnngttggtttcaaatttgtttaataagtataaacttatttcttgctaactttata |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12106280 |
gtagtgtgtgctataattatgttcaatgctaactagcctttttttttgttggtttcaaatttgttttataagtataaacttatttcttgctaactttata |
12106379 |
T |
|
| Q |
227 |
ctatacctatttattggtttgtgttttggacctttggtttttaatattcaccaaatttgcagtatacttgtcttgtccgtttattccgcactactaattg |
326 |
Q |
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|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12106380 |
ttatacctatttgttggtttgtgttttggacctttggtttttaatattcaccaaatttgcagtatacttgtcttgtccgtttattccgcactactaattg |
12106479 |
T |
|
| Q |
327 |
cattctaatacaattaactgtatacaagtatatctattccgatatttaaccgggattcttcaccatatgagattcacttaggcattgcattcattatctt |
426 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
12106480 |
cattctaatacaattaactgtatacaagaatatctattccgatatttaa-cgggattcttcaccatatgagattcactcaggcattgcatttattatctt |
12106578 |
T |
|
| Q |
427 |
gattaagccagttgagatctgatgtagatgagaactcttggttacctctattcataattcaggatgcatgaagtctatatctgctagaagggttggttct |
526 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12106579 |
gattaagccagttgagatctgatgtagatgagaactcttggttacatctattcataattcaggatgcatgaagtctatatctgctagaagggttggttct |
12106678 |
T |
|
| Q |
527 |
ctactcttttacgatctgatttctcacaggttc |
559 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| |
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| T |
12106679 |
ctactcttttacgatgtgatttctcactggttc |
12106711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 23 - 395
Target Start/End: Original strand, 12094705 - 12095096
Alignment:
| Q |
23 |
ttactggtgttgccgtctaactttatctcttttatgtagagcg--------------ccgaagaaaacaaagaagtgagcagcatacccagaaattcaaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| |||||| ||||||| ||||| |
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| T |
12094705 |
ttactggtgttgccgtctaactttatctcttttatgtacagcatttgaataagaggaccgaagaaaaccaagaagtgagaagcataaccagaaaatcaaa |
12094804 |
T |
|
| Q |
109 |
ggaaaattgcataatcatgtagtgtgtgctataattatgttcaatgctaactagccnnnnnnnnn---gttggtttcaaatttgtttaataagtataaac |
205 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| | ||| ||| |||||||||||| |
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| T |
12094805 |
ggaaaagtgcataatcatgtagtgtgtgctataatagtgttcaatgctaaccagcctcatttttttttgttggtttcgactttattttataagtataaac |
12094904 |
T |
|
| Q |
206 |
ttatttcttgctaactttatactatacctatttattggtttgtgttttggacctttggtttttaatattcaccaaatttgcagtata--cttgtcttgtc |
303 |
Q |
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|
||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | |||| |||| ||||||||||| |
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| T |
12094905 |
ttatttcttgcgaactttatattatacctatttgttggtttgtgttttggacctttggtttttaatattcatcaattgtgcaatatatacttgtcttgtc |
12095004 |
T |
|
| Q |
304 |
cgtttattccgcactactaattgcattctaatacaattaactgtatacaagtatatctattccgatatttaaccgggattcttcaccatatg |
395 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || || |||| ||||||||||| |||||||| |
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| T |
12095005 |
cgtttattccgcactactaatcgcattctaatacaattaactgtatacaagtatatctacaccaatgtttacccgggattctttaccatatg |
12095096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 10675926 - 10675824
Alignment:
| Q |
10 |
tagaatttctgtgttactggtgttgccgtctaactttatctcttttatgtagagcgccgaagaaaacaaagaagtgagcagcatacccagaaattcaaag |
109 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||| |
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| T |
10675926 |
tagaatttctgtcttactggtgttgccgtctaactttatctcttttatgtagagcgccgaagagaaccaagaagtgagcagcataccaagaaattcaaag |
10675827 |
T |
|
| Q |
110 |
gaa |
112 |
Q |
| |
|
||| |
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|
| T |
10675826 |
gaa |
10675824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 186 - 342
Target Start/End: Complemental strand, 1454505 - 1454349
Alignment:
| Q |
186 |
tttgtttaataagtataaacttatttcttgctaactttatactatacctatttattggtttgtgttttggacctttggtttttaatattcaccaaa-ttt |
284 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||| || |||||| |||| || ||||||||||| |||||||||||||||||||||| ||| ||| |
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| T |
1454505 |
tttgttttattagtataaacttatttcttgctaactttctattataccgatttgttagtttgtgtttt-gacctttggtttttaatattcagtaaagttt |
1454407 |
T |
|
| Q |
285 |
gcagtatacttgtcttgtccgtttattccgcactactaattgcattctaatacaatta |
342 |
Q |
| |
|
||| ||| ||||| |||||| |||||||| || || ||| |||||||||| |||||| |
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|
| T |
1454406 |
gcaatattcttgtgttgtccatttattccacattataaatcgcattctaatccaatta |
1454349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 388 - 477
Target Start/End: Complemental strand, 1454323 - 1454234
Alignment:
| Q |
388 |
accatatgagattcacttaggcattgcattcattatcttgattaagccagttgagatctgatgtagatgagaactcttggttacctctat |
477 |
Q |
| |
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|||||||| |||||||||| | ||| || |||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1454323 |
accatatgcgattcacttacgtattacaatcattatcttcattgagccagttgagatctgatgtagatgaaaactcttggttacctctat |
1454234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12106106 - 12106165
Alignment:
| Q |
1 |
tgagtttgatagaatttctgtgttactggtgttgccgtctaactttatctcttttatgta |
60 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12106106 |
tgagtttggtagaatttctgtgttactggtgttgccgtctaactttatctgttttatgta |
12106165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 194 - 334
Target Start/End: Complemental strand, 10675723 - 10675587
Alignment:
| Q |
194 |
ataagtataaacttatttcttgctaactttatactatacctatttattggtttgtgttttggacctttggtttttaatattcaccaaatttgcagtatac |
293 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||| || || ||||||||||||||||||||| |||||||||||||| |||| ||||||| |
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| T |
10675723 |
ataagtataaacttatttcttgc--actttatac-----ctacttgttagtttgtgttttggacctttggcttttaatattcaccttgtttgtagtatac |
10675631 |
T |
|
| Q |
294 |
ttg---tcttgtccgtttattccgcactactaattgcattctaa |
334 |
Q |
| |
|
|| |||||||||||| ||||||| ||| |||||||||||| |
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|
| T |
10675630 |
ctgtcttcttgtccgtttgttccgcattacagattgcattctaa |
10675587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 1458835 - 1458744
Alignment:
| Q |
19 |
tgtgttactggtgttgccgtctaactttatctcttttatgtagagcgccgaagaaaacaaagaagtgagcagcatacccagaaattcaaaggaa |
112 |
Q |
| |
|
||||||||||| ||| ||||||| | ||||||||||||| ||||||| || || || ||||| |||||| |||||||||||||||||||||| |
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|
| T |
1458835 |
tgtgttactggcgttatcgtctaattgtatctcttttatgcagagcgc--aaaaagaccaagaactgagcatcatacccagaaattcaaaggaa |
1458744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 478
Target Start/End: Complemental strand, 1458439 - 1458361
Alignment:
| Q |
400 |
tcacttaggcattgcattcattatcttgattaagccagttgagatctgatgtagatgagaactcttggttacctctatt |
478 |
Q |
| |
|
|||||||| ||| ||||||||||||| ||| |||||||| ||||||||||| | | | |||||||||||||||||| |
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|
| T |
1458439 |
tcacttagaaattacattcattatcttcatttagccagtttgaatctgatgtagttaatagctcttggttacctctatt |
1458361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 26592413 - 26592475
Alignment:
| Q |
36 |
cgtctaactttatctcttttatgtagagcgccgaagaaaacaaagaagtgagcagcatacccagaaa |
102 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
26592413 |
cgtctaactttatctcttttat----agcgccgaagaaaaccaagaagtgagcagcatatccagaaa |
26592475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 12155758 - 12155667
Alignment:
| Q |
19 |
tgtgttactggtgttgccgtctaactttatctcttttatgtagagcgccgaagaaaacaaagaagtgagcagcatacccagaaattcaaaggaa |
112 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| | || |||||||||||| |||||||| ||||| | | || |||||| ||||||||||||||| |
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| T |
12155758 |
tgtgttactggtattgtcgtctaactttatttatt--atgtagagcgccaaagaaaaccaagaattaaacatcataccaagaaattcaaaggaa |
12155667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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