View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19542_low_2 (Length: 452)
Name: NF19542_low_2
Description: NF19542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19542_low_2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 19 - 443
Target Start/End: Complemental strand, 24059106 - 24058682
Alignment:
| Q |
19 |
gtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatgccaaattc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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|
| T |
24059106 |
gtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtgccctttttatggcagcttaatgcccaaaatgccaaattc |
24059007 |
T |
|
| Q |
119 |
atctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagtaagaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24059006 |
atctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagtaagaa |
24058907 |
T |
|
| Q |
219 |
atttagtcctaaaatattctggatcaagatagccgaagctaccctttacatgggttgtaacgtggctcttatcaagaagaggacccttttttgatatgcc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24058906 |
atttagtcctaaaatattctggatcaagatagccgaagctaccctttacatgggttgtaacgtggctcttatcaagaagaggacccttttttgatatgcc |
24058807 |
T |
|
| Q |
319 |
aaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctttgtttagctccagtgtgaagataa |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24058806 |
aaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgtcttcacatcacggtgaattatgctttgtttagctccagtgtgaagataa |
24058707 |
T |
|
| Q |
419 |
agaagtcctttcgcagcccctatgc |
443 |
Q |
| |
|
|||||||||||||||||||| |||| |
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|
| T |
24058706 |
agaagtcctttcgcagccccgatgc |
24058682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 440
Target Start/End: Complemental strand, 30730901 - 30730480
Alignment:
| Q |
19 |
gtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatgccaaattc |
118 |
Q |
| |
|
||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||| |||||||||| |||||||||||| |
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|
| T |
30730901 |
gtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccgcaatgccaaattc |
30730802 |
T |
|
| Q |
119 |
atctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagtaagaa |
218 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||| || |||||||||||||||| ||||||||| || || ||| ||||||||||||||||||| |||| |
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|
| T |
30730801 |
atctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccactccaaaagagaaaacatctgatttcttagttagaa |
30730702 |
T |
|
| Q |
219 |
atttagtcctaaaatattctggatcaagatagccgaagctaccctttacatgggttgtaacgtggctcttatcaagaagaggacccttttttgatatgcc |
318 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || ||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |||||||| |
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|
| T |
30730701 |
atttagtcctaaaatattctggatcaacttagccaaaactaccctttacattagttgtaacgtgactcttatcaagaataggaccctttttcgatatgcc |
30730602 |
T |
|
| Q |
319 |
aaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctttgtttagctccagtgtgaagataa |
418 |
Q |
| |
|
|||||||| |||||||||||||| |||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30730601 |
aaaatcagaaacttttggcacaatctttttgtccaagagaatgtttgttgtcttcacgtcacggtgaattatgctttgtttagctccagtgtgaagatat |
30730502 |
T |
|
| Q |
419 |
agaagtcctttcgcagccccta |
440 |
Q |
| |
|
| |||||| || |||||||||| |
|
|
| T |
30730501 |
aaaagtccctttgcagccccta |
30730480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 396
Target Start/End: Complemental strand, 33872813 - 33872733
Alignment:
| Q |
316 |
gccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctttg |
396 |
Q |
| |
|
|||||| ||||||||||| | |||| ||| ||||| || ||||||||||| || || ||||| ||||||||||| ||||| |
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|
| T |
33872813 |
gccaaagtcagcaactttagcaacaaagttatcatctaaaagaatgtttgtcgtctttacatctcggtgaattatactttg |
33872733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 440
Target Start/End: Original strand, 14670919 - 14671340
Alignment:
| Q |
19 |
gtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatgccaaattc |
118 |
Q |
| |
|
||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||||||||| |
|
|
| T |
14670919 |
gtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacaatgccaaattc |
14671018 |
T |
|
| Q |
119 |
atctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagtaagaa |
218 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||| || |||||||||||||||| ||||||||| || || ||| ||||||||||||||||||| |||| |
|
|
| T |
14671019 |
atctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccactccaaaagagaaaacatctgatttcttagttagaa |
14671118 |
T |
|
| Q |
219 |
atttagtcctaaaatattctggatcaagatagccgaagctaccctttacatgggttgtaacgtggctcttatcaagaagaggacccttttttgatatgcc |
318 |
Q |
| |
|
| ||||||||||||||||| ||||||| |||||| || ||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |||||||| |
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|
| T |
14671119 |
acttagtcctaaaatattcaggatcaacatagccaaaactaccctttacattagttgtaacgtgactcttatcaagaataggaccctttttcgatatgcc |
14671218 |
T |
|
| Q |
319 |
aaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctttgtttagctccagtgtgaagataa |
418 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| |||||||||||||||||||| || | ||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
14671219 |
aaaatcagcaacttttggtacaagattttcgtccaagagaatgtttgttgtctttatgtcacggtgaattatgctttctttagctccagtgtgaagatat |
14671318 |
T |
|
| Q |
419 |
agaagtcctttcgcagccccta |
440 |
Q |
| |
|
| |||||| || |||||||||| |
|
|
| T |
14671319 |
aaaagtccctttgcagccccta |
14671340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 426
Target Start/End: Complemental strand, 14685394 - 14684987
Alignment:
| Q |
19 |
gtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatgccaaattc |
118 |
Q |
| |
|
||||| ||| |||||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||||| ||| ||||||||||| | |||||||||| |
|
|
| T |
14685394 |
gtttagagaatccatattcactttgccaatcaaaaatgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacattgccaaattc |
14685295 |
T |
|
| Q |
119 |
atctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagtaagaa |
218 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||| || |||||||||||||||| ||||||||| || || ||| ||||||||||||||||||| |||| |
|
|
| T |
14685294 |
atctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccactccaaaagagaaaacatctgatttcttagttagaa |
14685195 |
T |
|
| Q |
219 |
atttagtcctaaaatattctggatcaagatagccgaagctaccctttacatgggttgtaacgtggctcttatcaagaagaggacccttttttgatatgcc |
318 |
Q |
| |
|
|| |||||||||||||||| ||||||| |||||| || ||||||||||||| ||||||||||| ||||||||||||| ||||||||||| |||||||| |
|
|
| T |
14685194 |
atgtagtcctaaaatattcaggatcaacatagccaaaactaccctttacattcgttgtaacgtgactcttatcaagaattggaccctttttcgatatgcc |
14685095 |
T |
|
| Q |
319 |
aaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctttgtttagctccagtgtgaagataa |
418 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14685094 |
aaaatcagcaacttttggcacaagattttcgtccaagagaatgtttgctgtcttcacatcacggtgaattatgctttgtttagctccagtgtgaagatat |
14684995 |
T |
|
| Q |
419 |
agaagtcc |
426 |
Q |
| |
|
| |||||| |
|
|
| T |
14684994 |
aaaagtcc |
14684987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 14705084 - 14704884
Alignment:
| Q |
19 |
gtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatgccaaattc |
118 |
Q |
| |
|
||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||||||||| |
|
|
| T |
14705084 |
gtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacaatgccaaattc |
14704985 |
T |
|
| Q |
119 |
atctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagtaagaa |
218 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||| || |||||||||||||||| ||||||||| || | ||| ||||||||||||||||||| |||| |
|
|
| T |
14704984 |
atctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccactccataagagaaaacatctgatttcttagttagaa |
14704885 |
T |
|
| Q |
219 |
a |
219 |
Q |
| |
|
| |
|
|
| T |
14704884 |
a |
14704884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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