View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19542_low_4 (Length: 284)
Name: NF19542_low_4
Description: NF19542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19542_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 12105881 - 12106129
Alignment:
| Q |
19 |
ctttttgcagatttggtttattgacattagttatttgctgcataaggaatgaataaccggttaattttaaaacggtagtgtagcaggcattggcagacaa |
118 |
Q |
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| T |
12105881 |
ctttttgaagatttggtttattgacattagttatttgctgcataaggaatgaataaccggttaattttaaaacggtagtgtagcaggcattggcagacaa |
12105980 |
T |
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| Q |
119 |
gatttaggtttgttggtcaattttgaaatgtcgatgaaggacccttaaattagtattattaattaagagataaatagaaaacatgtt---gaaggtagac |
215 |
Q |
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| T |
12105981 |
gatttaggtttgttggtcaattttgaaatgtcgatgaaggacccttaaattagtattattaattaagagataaacagaaaacatgttgaagaaggtagac |
12106080 |
T |
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| Q |
216 |
actaagtatatgtttagatcagcggtgagtttgatagaatttctgtgtt |
264 |
Q |
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| T |
12106081 |
actaagtgcatgtttagatcagcggtgagtttggtagaatttctgtgtt |
12106129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 131 - 241
Target Start/End: Complemental strand, 10676046 - 10675933
Alignment:
| Q |
131 |
ttggtcaattttgaaatgtcgatgaaggacccttaaattagtattattaattaagagataaatagaaaacatgtt---gaaggtagacactaagtatatg |
227 |
Q |
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| T |
10676046 |
ttggtcacttttgcaatgtcagtgaaggacccttaaattattatcattaattaagagataaatagaaaacatgttgaagaaggtagacactaagtacatg |
10675947 |
T |
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| Q |
228 |
tttagatcagcggt |
241 |
Q |
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| T |
10675946 |
tttagatcagcggt |
10675933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 10675579 - 10675523
Alignment:
| Q |
52 |
tttgctgcataaggaatgaataaccggttaattttaaaacggtagtgtagcaggcat |
108 |
Q |
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| T |
10675579 |
tttgctgcacaaggaatgtataatcagttaattttaaaagggtagtgttgtaggcat |
10675523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 405155 - 405225
Alignment:
| Q |
96 |
gtgtagcaggcattggcagacaagatttaggtttgttggtcaattttgaaatgtcgatgaaggacccttaa |
166 |
Q |
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| T |
405155 |
gtgtagtaggcatatgcagacaagcttttggttttttggtcatttttgaaatgtggatgaaggatccttaa |
405225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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