View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19543_high_13 (Length: 271)
Name: NF19543_high_13
Description: NF19543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19543_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 39277110 - 39276856
Alignment:
| Q |
1 |
gatttgaagacatatgattatgtgagtgatactaggcactctcataaaataagctaagctgagctatgatcattggcttcaatcacattgaatgtggtgc |
100 |
Q |
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| T |
39277110 |
gatttgaagacatgtgattatgtgagtgatactaggcactc--ataaaataagctaagctaagctatgatcattggcttcaatcacattgaatgtggtgc |
39277013 |
T |
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| Q |
101 |
tgtagtaaaactggtataaattatatgtacccaaagtaaaaaataattttgtcactcccttttggtcacacttctcattggaatttgcatcagcatttgc |
200 |
Q |
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| T |
39277012 |
tgtagtaaaactggtataaattatatgtacccaaagtaaaaaataattttgtcgctccctttaggtcacacttctcattggaatttgcatcagcatttgc |
39276913 |
T |
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| Q |
201 |
agtcaaagttgacaatgttcctaatgaaaaaattgcatcaccaaacctatgatctct |
257 |
Q |
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| T |
39276912 |
agtcaaagttgacaatgttcctaatgaaaaaattgcatcaccaaacctatgatctct |
39276856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 39270477 - 39270409
Alignment:
| Q |
178 |
ttggaatttgcatcagcatttgcagtcaaagttgacaatgttcctaatgaaaaaattgcatcaccaaac |
246 |
Q |
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| T |
39270477 |
ttggaatttgaatcagcacttggagtcaaagttgacaatgttgtgaatgaaataattgcatcactaaac |
39270409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 39271090 - 39271012
Alignment:
| Q |
1 |
gatttgaagacatatgattatgtgagtgatactaggcactctcataaaataagctaagctgagctatgatcattggcttcaatc |
84 |
Q |
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||||||||| ||| || |||||||||| |||| ||||||||| |||||||| ||||||||||||||||||| |||||||| |
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| T |
39271090 |
gatttgaaggcatgtggttatgtgagtcatacaaggcactcttataaaata-----agctgagctatgatcattgacttcaatc |
39271012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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