View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19543_high_16 (Length: 248)
Name: NF19543_high_16
Description: NF19543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19543_high_16 |
 | |
|
| [»] scaffold0219 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0219 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 23906 - 24138
Alignment:
| Q |
1 |
cttgaagcaattcaatctgctcctttgaaacaaatttcacctgatcatttgaatagcttataaaattaaattagaagaaagtaaaagaaaattttctaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23906 |
cttgaagcaattcaatctgctcctttgaaacaaatttcacctgatcatttgaatagcttataaaattaaattagaagaaagtaaaagaaaattttctaac |
24005 |
T |
|
| Q |
101 |
ctaataaatatgaccaactaaactagttatttaataattaagagaacctagcaaattaaattaatcactaacctctctaacaattgtccaagtaatattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24006 |
ctaataaatatgaccaactaaactagttatttaataattaagagaacctagcaaattaaattaatcactaacctctctaacaattgtccaagtaatattt |
24105 |
T |
|
| Q |
201 |
tcatcgcaagtaatattttctaacctaatgcat |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
24106 |
tcatcgcaagtaatattttctaacctaatgcat |
24138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 29056 - 29264
Alignment:
| Q |
4 |
gaagcaattcaatctgctcctttgaaacaaatttcacctgatcatttgaatagcttataaaattaaattagaagaaagtaaaagaaaattttctaaccta |
103 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29056 |
gaagcaattcgatttgctcctttgaaacaaatttcacctgatcatttgaatagattataaaattaaattagaagaaagtaaaagaaaattttctaaccta |
29155 |
T |
|
| Q |
104 |
ataaatatgaccaactaaactagttatttaat-aattaagagaacctagcaaattaaatt-aatcactaacctctctaacaattgtccaagtaatatttt |
201 |
Q |
| |
|
|||| | ||||||| ||||||| ||||||||| ||||||||| | | ||| |||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29156 |
ataagtgtgaccaattaaactaattatttaataaattaagaggagcatgcagattaaattaaattactaacctctctaacaattgtccaagtaatatttt |
29255 |
T |
|
| Q |
202 |
catcgcaag |
210 |
Q |
| |
|
|||| |||| |
|
|
| T |
29256 |
catcacaag |
29264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University