View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19543_high_2 (Length: 824)

Name: NF19543_high_2
Description: NF19543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19543_high_2
NF19543_high_2
[»] chr7 (10 HSPs)
chr7 (1-322)||(18951608-18951929)
chr7 (1-326)||(18978761-18979084)
chr7 (1-326)||(18996291-18996616)
chr7 (394-697)||(18952001-18952307)
chr7 (394-697)||(18996684-18996992)
chr7 (394-651)||(18979152-18979412)
chr7 (646-697)||(18982287-18982338)
chr7 (767-811)||(18952377-18952421)
chr7 (769-811)||(18997063-18997105)
chr7 (1-66)||(28088379-28088444)
[»] scaffold0625 (1 HSPs)
scaffold0625 (1-326)||(40-365)
[»] chr5 (1 HSPs)
chr5 (277-326)||(5992700-5992749)
[»] chr4 (1 HSPs)
chr4 (1-108)||(13434010-13434116)
[»] chr1 (1 HSPs)
chr1 (1-95)||(32907048-32907141)


Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 18951608 - 18951929
Alignment:
Q  1 tggttatgacgcaaccgcgaggctgatcacattggcggcaaccgcggctacatggtggaagaagaatttagatgaagggagtaaggctgaagagggcggc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18951608 tggttatgacgcaaccgcgaggctgatcacattggcggtaaccgcggctacatggtggaagaagaatttagatgaagggggtaaggctgaagagggcggc 18951707  T
Q  101 gatgaaggttagagaggtcagagcaaaatcaagaaataagagagaggttagagaagaaaagtaggtttgttttgccaaacaaggctgagattggcggtgg 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  18951708 ggtgaaggttagagaggtcagagcaaaatcaagaaataagagagaggttagagaagaaaagtaggtttgttttgccaaacaaggctgagattgacggtgt 18951807  T
Q  201 ttgagggataaaatccggcggcggcgagaaggaaaaaggaaaaatcaattcactgcttataactcacacatcgtagtatttttagtcaaaacaaaaatgc 300  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18951808 ttgagggataaaatccggcggcggcgagaaggaaaaaggcaaaatcaattcactgcttataactcacacatcgtagtatttttagtcaaaacaaaaatgc 18951907  T
Q  301 tacattaaacttttgtcactct 322  Q
    ||||||||| ||||||||||||    
T  18951908 tacattaaagttttgtcactct 18951929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 18978761 - 18979084
Alignment:
Q  1 tggttatgacgcaaccgcgaggctgatcacattggcggcaaccgcggctacatggtggaagaagaatttagatgaagggagtaaggctgaagagggcggc 100  Q
    ||||||||||||||||| ||   |||||||||||||||||||||||||||| ||||||||||||||||| |||||| || ||||||||||||||||||||    
T  18978761 tggttatgacgcaaccgagaa--tgatcacattggcggcaaccgcggctacttggtggaagaagaatttggatgaacggcgtaaggctgaagagggcggc 18978858  T
Q  101 gatgaaggttagagaggtcagagcaaaatcaagaaataagagagaggttagagaagaaaagtaggtttgttttgccaaacaaggctgagattggcggtgg 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18978859 ggtgaaggttagagaggtcagagcaaaatcaagaaataagagagaggttagagaagaaaagtaggtttgttttgccaaacaaggctgagattggcggtgg 18978958  T
Q  201 ttgagggataaaatccggcggcggcgagaaggaaaaaggaaaaatcaattcactgcttataactcacacatcgtagtatttttagtcaaaacaaaaatgc 300  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18978959 ttgagggataaaatccgacggcggcgagaaggaaaaaggaaaaatcaattcactgcttataactcacacatcgtagtatttttagtcaaaacaaaaatgc 18979058  T
Q  301 tacattaaacttttgtcactcttagt 326  Q
    ||||||||||||||||||||||||||    
T  18979059 tacattaaacttttgtcactcttagt 18979084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 18996291 - 18996616
Alignment:
Q  1 tggttatgacgcaaccgcgaggctgatcacattggcggcaaccgcggctacatggtggaagaagaatttagatgaagggagtaaggctgaagagggcggc 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  18996291 tggttatgacgcaaccgcaaggctgatcacattggcggcaaccgcggctacttggtggaagaagaatttggatgaagggcgtaaggctgaagagggcggc 18996390  T
Q  101 gatgaaggttagagaggtcagagcaaaatcaagaaataagagagaggttagagaagaaaagtaggtttgttttgccaaacaaggctgagattggcggtgg 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||    
T  18996391 ggtgaaggttagagaggtcagagcaaaatcaagaaataagagagaggttagagaagaaaagtaggtccgttttgccaaacaaggttgagattggcggtgg 18996490  T
Q  201 ttgagggataaaatccggcggcggcgagaaggaaaaaggaaaaatcaattcactgcttataactcacacatcgtagtatttttagtcaaaacaaaaatgc 300  Q
    ||||| | ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18996491 ttgagaggtaaaatccggcggcggcaagaaggaaaaaggaaaaatcaattcattgcttataactcacacatcgtagtatttttagtcaaaacaaaaatgc 18996590  T
Q  301 tacattaaacttttgtcactcttagt 326  Q
    ||||||||||||||||||||||||||    
T  18996591 tacattaaacttttgtcactcttagt 18996616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 394 - 697
Target Start/End: Original strand, 18952001 - 18952307
Alignment:
Q  394 aagatggtttgaagaaataaattgcattggaagatggtttggttacagtttggttcaggttaaacctatttttgtttccacaactttttgaattggtctt 493  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18952001 aagatggtttgatgaaataaattgcattggaagatgacttggttacagtttggttcaggttaaacctatttttgtttccacaactttctgaattggtctt 18952100  T
Q  494 attgataaccaaaccaaccaatannnnnnnnggtttgcatcggttcaggactcagaagtgagaatcagatta---ttattatggttgattattaaaccaa 590  Q
    |||||||||||||||||||||||        |||||| ||||| ||||||||||||||||||||||||||||   ||||||||||| |||||||||||||    
T  18952101 attgataaccaaaccaaccaatattttttttggtttgtatcggatcaggactcagaagtgagaatcagattattattattatggttcattattaaaccaa 18952200  T
Q  591 tattgaactttatgctcatgctcgctaattataagagtaatacactttgttagctagtcacacccttacaccaacatacatatatgtgtatgtctattta 690  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18952201 tattgaactttatgctcatgctcgctaattctaagagtaatacactttgttagctagtcacacccttacaccaacatacatatatgtgtatgtctattta 18952300  T
Q  691 ccgaaag 697  Q
    | |||||    
T  18952301 ctgaaag 18952307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 394 - 697
Target Start/End: Original strand, 18996684 - 18996992
Alignment:
Q  394 aagatggtttgaagaaataaattgcattggaagatggtttggttacagtttggttcaggttaaacctatttttgtttccacaactttttgaattggtctt 493  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  18996684 aagatggtttgatgaaataaattgcattggaagatggtttggttacagtttggttcaagttaaacctatttttgtttccataactttttgaattggtctt 18996783  T
Q  494 attgataaccaaaccaaccaatannnnnnnnggtttgcatcggttcaggactcagaagtgagaatcagatta------ttattatggttgattattaaac 587  Q
    |||||||||||||||||| ||||        |||| | ||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||    
T  18996784 attgataaccaaaccaactaatattttttttggtt-gtatcggttcaggactcagaagtgagaatcagattattattattattatggttgattattaaac 18996882  T
Q  588 caatattgaactttatgctcatgctcgctaattataagagtaatacactttgttagctagtcacacccttacaccaacatacatatatgtgtatgtctat 687  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18996883 caatattgaactttatgctcatgctcgctaattctaagagtaatacacttccttagctagtcacacccttacaccaacatacatatatgtgtatgtctat 18996982  T
Q  688 ttaccgaaag 697  Q
    |||| |||||    
T  18996983 ttactgaaag 18996992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 394 - 651
Target Start/End: Original strand, 18979152 - 18979412
Alignment:
Q  394 aagatggtttgaagaaataaattgcattggaagatggtttggttacagtttggttcaggttaaacctatttttgtttccacaactttttgaattggtctt 493  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18979152 aagatggtttgatgaaataaattgcattggaagatggcttggttacagtttggttcaggttaaacctatttttgtttccacaactttctgaattggtctt 18979251  T
Q  494 attgataaccaaaccaaccaatannnnnnnnggtttgcatcggttcaggactcagaagtgagaatcag---attattattatggttgattattaaaccaa 590  Q
    |||||||||||||||||| |||         |||||| ||||| ||||||||||||||||||| ||||   |||||||||||||||||||||||||||||    
T  18979252 attgataaccaaaccaactaattttttttttggtttgtatcggatcaggactcagaagtgagagtcagattattattattatggttgattattaaaccaa 18979351  T
Q  591 tattgaactttatgctcatgctcgctaattataagagtaatacactttgttagctagtcac 651  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  18979352 tattgaactttatgctcatgctctctaattctaagagtaatacacttcgttagctagtcac 18979412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 646 - 697
Target Start/End: Original strand, 18982287 - 18982338
Alignment:
Q  646 agtcacacccttacaccaacatacatatatgtgtatgtctatttaccgaaag 697  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18982287 agtcacacccttacaccaacatacatatatgtgtatgtctatttacggaaag 18982338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 767 - 811
Target Start/End: Original strand, 18952377 - 18952421
Alignment:
Q  767 tacaattgtcttgatagatccaggcttgttaaataataaataaag 811  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  18952377 tacaattgtcttgatagatccaggcttgttaaataataaataaag 18952421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 769 - 811
Target Start/End: Original strand, 18997063 - 18997105
Alignment:
Q  769 caattgtcttgatagatccaggcttgttaaataataaataaag 811  Q
    |||| ||| ||||||||||||||||||||||||||||||||||    
T  18997063 caatagtcatgatagatccaggcttgttaaataataaataaag 18997105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 28088379 - 28088444
Alignment:
Q  1 tggttatgacgcaaccgcgaggctgatcacattggcggcaaccgcggctacatggtggaagaagaa 66  Q
    |||| |||||||| |||||||||||||| |||   || ||||||||||||||||||||||| ||||    
T  28088379 tggtgatgacgcagccgcgaggctgatcgcatcaccgacaaccgcggctacatggtggaagtagaa 28088444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0625 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 365 - 40
Alignment:
Q  1 tggttatgacgcaaccgcgaggctgatcacattggcggcaaccgcggctacatggtggaagaagaatttagatgaagggagtaaggctgaagagggcggc 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  365 tggttatgacgcaaccgcaaggctgatcacattggcggcaaccgcggctacttggtggaagaagaatttggatgaagggcgtaaggctgaagagggcggc 266  T
Q  101 gatgaaggttagagaggtcagagcaaaatcaagaaataagagagaggttagagaagaaaagtaggtttgttttgccaaacaaggctgagattggcggtgg 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||    
T  265 ggtgaaggttagagaggtcagagcaaaatcaagaaataagagagaggttagagaagaaaagtaggtccgttttgccaaacaaggttgagattggcggtgg 166  T
Q  201 ttgagggataaaatccggcggcggcgagaaggaaaaaggaaaaatcaattcactgcttataactcacacatcgtagtatttttagtcaaaacaaaaatgc 300  Q
    ||||| | ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  165 ttgagaggtaaaatccggcggcggcaagaaggaaaaaggaaaaatcaattcattgcttataactcacacatcgtagtatttttagtcaaaacaaaaatgc 66  T
Q  301 tacattaaacttttgtcactcttagt 326  Q
    ||||||||||||||||||||||||||    
T  65 tacattaaacttttgtcactcttagt 40  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 5992749 - 5992700
Alignment:
Q  277 tatttttagtcaaaacaaaaatgctacattaaacttttgtcactcttagt 326  Q
    |||||||||||||||||||||  |||||| ||||||||||||||||||||    
T  5992749 tatttttagtcaaaacaaaaaatctacatcaaacttttgtcactcttagt 5992700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 13434116 - 13434010
Alignment:
Q  1 tggttatgacgcaaccgcgaggctgatcacattggcggcaaccgcggctacatggtggaagaagaatttagatgaagggagtaaggctgaagagggcggc 100  Q
    |||| |||||||| |||||||||||||| |||   ||| ||  ||||||||||||||||||||||| || ||| | ||| ||||| |||||| |||||||    
T  13434116 tggtgatgacgcagccgcgaggctgatcgcatcaccggaaagtgcggctacatggtggaagaagaagttggattatggg-gtaagtctgaagggggcggc 13434018  T
Q  101 gatgaagg 108  Q
    | ||||||    
T  13434017 ggtgaagg 13434010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 32907141 - 32907048
Alignment:
Q  1 tggttatgacgcaaccgcgaggctgatcacattggcggcaaccgcggctacatggtggaagaagaatttagatgaagggagtaaggctgaagagg 95  Q
    |||| |||||||| |||||||||||||| |||   ||||||||||  |||||||||||||| |||| || ||| | ||| |||||||||||||||    
T  32907141 tggtgatgacgcagccgcgaggctgatcgcatcaccggcaaccgcaactacatggtggaagtagaagttggattatggg-gtaaggctgaagagg 32907048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University