View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19543_high_5 (Length: 666)

Name: NF19543_high_5
Description: NF19543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19543_high_5
NF19543_high_5
[»] chr4 (1 HSPs)
chr4 (14-651)||(43205516-43206150)


Alignment Details
Target: chr4 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 14 - 651
Target Start/End: Complemental strand, 43206150 - 43205516
Alignment:
Q  14 agacgttgatgaggttgagagatgcagcgtatagaaggttacggtggactgcaagacatgtgatatgaggcgttagggttttgatggaagtgagatattg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43206150 agacgttgatgaggttgagagatgcagcgtatagaaggttacggtggactgcaagacatgtgatatgaggcgttagggttttgatggaagtgagatattg 43206051  T
Q  114 gtagttgagaatggaaatagggttttgtttttgttgaaggtgaaggaaggttgtgatagtattagtgaagtcattcttcttcattatggtgaagagagtg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  43206050 gtagttgagaatggaaatagggttttgtttttgttgaaggtgaaggaaggttgtgatagtattagtgaagtcattcttc---attatggtgaagagagtg 43205954  T
Q  214 caaaaagagtgatgatcgatgtgaggcaaataatggatggagaatggagaagggaagggagacaaaggggagtagctgaggaagggaacataagtagcgg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43205953 caaaaagagtgatgatcgatgtgaggcaaataatggatggagaatggagaagggaagggagacaaaggggagtagctgaggaagggaacataagtagcgg 43205854  T
Q  314 ttgggctggattctcgtaagggcacgtggataattcagaagtttatacacgtggcaagaagggaatgctacgaggagaaacatggtggggcacaaagtga 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43205853 ttgggctggattctcgtaagggcacgtggataattcagaagtttatacacgtggcaagaagggaatgctacgaggagaaacatggtggggcacaaagtga 43205754  T
Q  414 gtggaggggtccgtataagatttgttggaccgtgagaatcagattggtcaacgtgtcacttgttaattgataaaagtttattgaggtacgactcagagtg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43205753 gtggaggggtccgtataagatttgttggaccgtgagaatcagattggtcaacgtgtcacttgttaattgataaaagtttattgaggtacgactcagagtg 43205654  T
Q  514 ctggcaaacatcttttcaaccatattggattttacgcaatcaagaaaaacacacatttttgaacatgattattgttccatcttaatccaacgatcttaaa 613  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  43205653 ctggcaaacatcttttcaaccatattggattttacgcaatcaagaagaacacacatttttgaacatgattaatgttcgatcttaatctaacgatcttaaa 43205554  T
Q  614 atatttaaattttaaatttacattatgatatagaatat 651  Q
    |||||||||||||||||||| || ||||||||||||||    
T  43205553 atatttaaattttaaatttatatcatgatatagaatat 43205516  T

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