View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19543_low_1 (Length: 897)

Name: NF19543_low_1
Description: NF19543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19543_low_1
NF19543_low_1
[»] chr7 (4 HSPs)
chr7 (10-881)||(36603932-36604802)
chr7 (566-600)||(18408992-18409026)
chr7 (566-600)||(21640038-21640072)
chr7 (566-600)||(21646236-21646270)
[»] chr1 (2 HSPs)
chr1 (217-320)||(20989668-20989771)
chr1 (25-116)||(20991006-20991097)
[»] chr4 (2 HSPs)
chr4 (512-589)||(5630644-5630720)
chr4 (553-596)||(34504909-34504952)
[»] chr8 (1 HSPs)
chr8 (566-600)||(31071062-31071096)
[»] chr5 (1 HSPs)
chr5 (566-600)||(38219628-38219662)
[»] chr3 (1 HSPs)
chr3 (566-600)||(1306178-1306212)
[»] chr2 (1 HSPs)
chr2 (566-600)||(25409859-25409893)


Alignment Details
Target: chr7 (Bit Score: 791; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 791; E-Value: 0
Query Start/End: Original strand, 10 - 881
Target Start/End: Original strand, 36603932 - 36604802
Alignment:
Q  10 acatcatcatcaatgcaaccagtctgatcatagagagcccgtttctcttcatctccaagaatggaaataactttttgcaattgctggaatttctctttag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36603932 acatcatcatcaatgcaaccagtctgatcatagagagcccgtttctcttcatctccaagaatggaaataactttttgcaattgctggaatttctctttag 36604031  T
Q  110 cctcctgtatgaacacaagtaattataattaccaacccaaaaaagccaacaaacaaataataaagtataaacgcaatccacagcataacaagcggcctta 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  36604032 cctcctgtatgaacacaagtaattataattaccaacccaaaaaagccaacaaacaaataataaaatataaacgcaatccacagcataacaagcagcctta 36604131  T
Q  210 aagaatcacctcatcaccaggatttttatccggatggagccgcaatgccaatttgtaataggccttctttatttcttgttgagaggccgttttctccaaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36604132 aagaatcacctcatcaccaggatttttatccggatggagccgcaatgccaatttgtaataggccttctttatttcttgttgagaggccgttttctccaaa 36604231  T
Q  310 ccaagaacctacaatcaaaccaacaacagatttagcatgtgtttagatgcacagttgaaaatgtcaaaatttatttttgttaatgattcaacaagaagag 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36604232 ccaagaacctacaatcaaaccaacaacagatttagcatgtgtttaaatgcacagttgaaaatgtcaaaatttatttttgttaatgattcaacaagaagag 36604331  T
Q  410 tggaacaaataccaacagcaagcaaactaaatgatctagcnnnnnnnntattcaaccgagaacaaatctagaacctatgtgcaagtgcaagtccaaatat 509  Q
    ||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36604332 tggaacaaataccaacagcaagcaaactaaatgatctagcaaaaaaaatattcaaccgagaacaaatctagaacctatgtgcaagtgcaattccaaatat 36604431  T
Q  510 tatcactctacgattcaatagaaaaacattgaatccttcctcgaatgattcttaattacccaaggtgtttacaatgtgtttcccaacccaatgtcactct 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36604432 tatcactctacgattcaatagaaaaacattgaatccttcctcgaatgattcttaattacccaaggtgtttacaatgtgttt-ccaacccaatgtcactct 36604530  T
Q  610 caacccataaaacctcttttctgcactttcacattctgattcaccatcctgcaacttcagcttttataacaaggcaaaaaaccagttggtatccaaatca 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36604531 caacccataaaacctcttttctgcactttcacattctgattcaccatcctgcaacttcagcttttataacaaggcaaaaaaccagttgggatccaaatca 36604630  T
Q  710 acattnnnnnnnctttactatgatcggaatccccttatgcaaaaaccatcacgagacaaaaaacagaagcatgattggaatcttccatgccagaaaccat 809  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36604631 acattaaaaaaactttactatgatcggaatccccttatgcaaaaaccatcacgagacaaaaaacagaagcatgattggaatcttccatgccagaaaccat 36604730  T
Q  810 aaaaatcctgtttttaaggcatgttcaccacaattttgcctcaatgtcaaacatacggtcatatgaatcaaa 881  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36604731 aaaaatcctgtttttaagacatgttcaccacaattttgcctcaatgtcaaacattcggtcatatgaatcaaa 36604802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 566 - 600
Target Start/End: Original strand, 18408992 - 18409026
Alignment:
Q  566 tacccaaggtgtttacaatgtgtttcccaacccaa 600  Q
    ||||||||||||||||||||| |||||||||||||    
T  18408992 tacccaaggtgtttacaatgtttttcccaacccaa 18409026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 566 - 600
Target Start/End: Original strand, 21640038 - 21640072
Alignment:
Q  566 tacccaaggtgtttacaatgtgtttcccaacccaa 600  Q
    ||||||||||||||||||||| |||||||||||||    
T  21640038 tacccaaggtgtttacaatgtttttcccaacccaa 21640072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 566 - 600
Target Start/End: Original strand, 21646236 - 21646270
Alignment:
Q  566 tacccaaggtgtttacaatgtgtttcccaacccaa 600  Q
    ||||||||||||||||||||| |||||||||||||    
T  21646236 tacccaaggtgtttacaatgtttttcccaacccaa 21646270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 217 - 320
Target Start/End: Complemental strand, 20989771 - 20989668
Alignment:
Q  217 acctcatcaccaggatttttatccggatggagccgcaatgccaatttgtaataggccttctttatttcttgttgagaggccgttttctccaaaccaagaa 316  Q
    ||||||||||||||||| ||||| ||||| || | ||| |||||||| | ||| ||||||||||||||||||| ||  || || ||||||| ||||||||    
T  20989771 acctcatcaccaggattcttatcaggatgaagtctcaacgccaatttatgatacgccttctttatttcttgtttagttgctgtcttctccacaccaagaa 20989672  T
Q  317 ccta 320  Q
    ||||    
T  20989671 ccta 20989668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 20991097 - 20991006
Alignment:
Q  25 caaccagtctgatcatagagagcccgtttctcttcatctccaagaatggaaataactttttgcaattgctggaatttctctttagcctcctg 116  Q
    |||||||| | |||||| || |||||||| |||||||| || |||||||| ||||| |||||||||||||| || ||  ||||||| |||||    
T  20991097 caaccagtttcatcataaagtgcccgtttttcttcatccccgagaatggagataacattttgcaattgctgaaacttggctttagcttcctg 20991006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 512 - 589
Target Start/End: Complemental strand, 5630720 - 5630644
Alignment:
Q  512 tcactctacgattcaatagaaaaacattgaatccttcctcgaatgattcttaattacccaaggtgtttacaatgtgtt 589  Q
    |||||||| ||||||||||| |||  ||||||| ||| || ||| |||| |||||||| |||||||||||||||||||    
T  5630720 tcactctaggattcaatagagaaagcttgaatctttc-tctaattattcataattacctaaggtgtttacaatgtgtt 5630644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 596
Target Start/End: Original strand, 34504909 - 34504952
Alignment:
Q  553 aatgattcttaattacccaaggtgtttacaatgtgtttcccaac 596  Q
    ||||||||||||||||  ||||| ||||||||||||||||||||    
T  34504909 aatgattcttaattacagaaggtatttacaatgtgtttcccaac 34504952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 566 - 600
Target Start/End: Complemental strand, 31071096 - 31071062
Alignment:
Q  566 tacccaaggtgtttacaatgtgtttcccaacccaa 600  Q
    ||||||||||||||||||||| |||||||||||||    
T  31071096 tacccaaggtgtttacaatgtttttcccaacccaa 31071062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 566 - 600
Target Start/End: Original strand, 38219628 - 38219662
Alignment:
Q  566 tacccaaggtgtttacaatgtgtttcccaacccaa 600  Q
    ||||||||||||||||||||| |||||||||||||    
T  38219628 tacccaaggtgtttacaatgtttttcccaacccaa 38219662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 566 - 600
Target Start/End: Original strand, 1306178 - 1306212
Alignment:
Q  566 tacccaaggtgtttacaatgtgtttcccaacccaa 600  Q
    ||||||||||||||||||||| |||||||||||||    
T  1306178 tacccaaggtgtttacaatgtttttcccaacccaa 1306212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 566 - 600
Target Start/End: Original strand, 25409859 - 25409893
Alignment:
Q  566 tacccaaggtgtttacaatgtgtttcccaacccaa 600  Q
    ||||||||||||||||||||| |||||||||||||    
T  25409859 tacccaaggtgtttacaatgtttttcccaacccaa 25409893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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